ID   AB693978; SV 1; linear; genomic RNA; STD; VRL; 985 BP.
XX
AC   AB693978;
XX
DT   25-JAN-2012 (Rel. 111, Created)
DT   27-JAN-2012 (Rel. 111, Last updated, Version 2)
XX
DE   Shallot yellow stripe virus gene for polyprotein (nuclear inclusion b, coat
DE   protein), partial cds, isolate: KN.
XX
KW   .
XX
OS   Shallot yellow stripe virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-985
RA   Yamamoto H., Senda M.;
RT   ;
RL   Submitted (20-JAN-2012) to the INSDC.
RL   Contact:Hideki Yamamoto Akita Prefectural Agriculture, Forestry and
RL   Fisheries Research Center, Agriculturar Experiment Station; Yuwa-aikawa,
RL   Akita, Akita 010-1231, Japan
XX
RN   [2]
RA   Yamamoto H., Senda M.;
RT   "CP gene of SYSV";
RL   Unpublished.
XX
DR   MD5; 95d09c0cfb7cbe8b8aa8924f14e17e17.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..985
FT                   /organism="Shallot yellow stripe virus"
FT                   /host="Allium fistulosum (Welsh onion)"
FT                   /isolate="KN"
FT                   /mol_type="genomic RNA"
FT                   /country="Japan:Akita"
FT                   /collection_date="Nov-2011"
FT                   /db_xref="taxon:62059"
FT   CDS             <1..789
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:H1AGD6"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:H1AGD6"
FT                   /protein_id="BAL46486.1"
FT                   /translation="VSYQASETEDAANVNTDKQIGKSKDKDKDVDVGTSGEFSVPKVKM
FT                   LSDKMRLPRVGKKVILNGKHLLTYKPDQVDLYNTRATHAQFKTWYDAVKLEYELTDEQM
FT                   KIVMNGLMVWCIENGTSQNLTGVWTMMDGDNQMEYPLSPIIDNAKPTFRQIMAHFSDAA
FT                   EAYIEYRNATEKYMPRYGLQRNLREYSLARYAFDFYEMNSKTPIRAKEAHMQMKAAAVR
FT                   GVANRMFGLDGNISTDDENTERHTAADVNKDHHTLLGLRM"
FT   mat_peptide     <1..12
FT                   /product="nuclear inclusion b"
FT                   /note="NIb"
FT   mat_peptide     13..786
FT                   /product="coat protein"
FT                   /note="CP"
XX
SQ   Sequence 985 BP; 330 A; 175 C; 233 G; 247 T; 0 other;
     gtgtcatatc aagcttcaga aacagaggac gctgctaatg tgaacactga taagcagatt        60
     ggaaagagta aggataagga taaagatgtt gacgttggta catcgggcga gttttcagtg       120
     ccaaaagtga aaatgttatc ggataagatg cgtttgccac gagttgggaa gaaggtaata       180
     cttaatggca aacacctttt aacttacaag cctgatcagg ttgatttata caatacacgg       240
     gcaacacacg cacagtttaa aacgtggtat gacgcagtga aactcgaata tgaactgacg       300
     gatgaacaga tgaaaatagt catgaatggg ttaatggtgt ggtgtattga aaatggcaca       360
     tcacaaaact taacgggagt ttggacaatg atggatggcg acaaccaaat ggaatatccg       420
     ctcagcccta ttattgacaa cgcaaaacca acattcagac aaataatggc acatttcagt       480
     gacgcagctg aagcgtacat tgaatatagg aatgccacag aaaaatacat gccccggtat       540
     ggacttcagc gaaacttaag agaatacagc ttagcacgtt acgcattcga cttttatgag       600
     atgaattcaa agacgccgat ccgcgcgaag gaagctcata tgcagatgaa agcagcagcg       660
     gttagagggg tagctaaccg catgtttggc ttggatggta acataagcac cgatgatgag       720
     aacacagaac gacatacagc agctgatgtg aataaggatc atcacacact gctcggtctt       780
     cgtatgtaat aaacatatat atattttaat atatagtgtc gtgcattatc tttcgttata       840
     tttgaatatg agcaaacaca gtgtggttac accaccgttt gtggcatagt atatgatata       900
     acttcgctag cattatttgc accatgcgac ttagtgtggt cacaccacga gaagagtcaa       960
     gtgttgtacg ttttgttagg gagac                                             985
//