ID AB676848; SV 1; linear; viral cRNA; STD; VRL; 3682 BP. XX AC AB676848; XX DT 24-APR-2012 (Rel. 112, Created) DT 27-SEP-2012 (Rel. 114, Last updated, Version 2) XX DE Hokkaido virus M gene for glycoprotein precursor, complete cds, isolate: DE Kitahiyama128M/2008. XX KW . XX OS Hokkaido virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Ellioviricetes; OC Bunyavirales; Hantaviridae; Mammantavirinae; Orthohantavirus; OC unclassified Orthohantavirus; unclassified Hantavirus. XX RN [1] RP 1-3682 RA Kariwa H., Ozaki Y., Hagiya T., Sanada T., Seto T., Taylor K., Ivanov L.I., RA Saasa N., Yoshii K., Tsubota T.; RT ; RL Submitted (21-OCT-2011) to the INSDC. RL Contact:Hiroaki Kariwa Hokkaido University, Graduate School of Veterinary RL Medicine; Kita-18, Nishi-9, Kita-Ku, Sapporo, Hokkaido 060-0818, Japan XX RN [2] RX DOI; 10.1099/vir.0.045377-0. RX PUBMED; 22791608. RA Sanada T., Seto T., Ozaki Y., Saasa N., Yoshimatsu K., Arikawa J., RA Yoshii K., Kariwa H.; RT "Isolation of Hokkaido virus, genus Hantavirus, using a newly established RT cell line derived from the kidney of the grey red-backed vole (Myodes RT rufocanus bedfordiae)"; RL J. Gen. Virol. 93(Pt 10):2237-2246(2012). XX DR MD5; 5b7b6911b0e1affe0c27aa8ee723d794. XX FH Key Location/Qualifiers FH FT source 1..3682 FT /organism="Hokkaido virus" FT /segment="Medium" FT /host="Myodes rufocanus" FT /isolate="Kitahiyama128M/2008" FT /mol_type="viral cRNA" FT /country="Japan:Hokkaido, Kitahiyama" FT /isolation_source="Lung of Myodes rufocanus bedfordiae" FT /collection_date="23-Oct-2008" FT /db_xref="taxon:1100878" FT CDS 41..3487 FT /codon_start=1 FT /transl_table=1 FT /gene="M" FT /product="glycoprotein precursor" FT /db_xref="GOA:I2FFC6" FT /db_xref="InterPro:IPR002532" FT /db_xref="InterPro:IPR002534" FT /db_xref="InterPro:IPR012316" FT /db_xref="InterPro:IPR016402" FT /db_xref="UniProtKB/TrEMBL:I2FFC6" FT /protein_id="BAM13711.1" FT /translation="MEKSSPVCLYLLLQGLLLWSSGRARNLNELKMECPHTIGLGQGLV FT VGSVELPPVPVQHVENLKLESSCNFDLHTSTATQQSFTKWTWETKNDLAENTQASSTSY FT QTKSSEVNLRGLCLVPTLVIETAARTRKTIACFDLSCNQTVCQPTVFLISPIQTCITTK FT SCLLGLGNQRIQVNYEKTYCVSGQLVEGVCFNPIHTMALSQPSHTYDIVTMMVRCFLIV FT KKATTGDTLKIEKNFETLVQKNGCTSNNFQGYYICLVGSSSEPLYVPTLDDYRSAEVLS FT RMAFAPHGEDHDIERNAVSAMRIVGKVTGKAPSTESSDTIQGIAFSGNPLYTSTGVLTA FT KDDPVYVWAPGIIMEGNHSICDKKTLPLTWTGFIPLPGEIEKTTQCTVFCTLAGPGADC FT EAYSETGIFNISSPTCLINRVQRFRGAEQQVKFVCQRVDMDITVYCNGIKKVILTKTLV FT IGQCIYTFTSIFSLMPGVAHSLAVELCVPGLHGWATMLLLLTFCFGWILIPTITLILLK FT ILLAFAYLCSKYNTDSKFKILIEKVKQEYQKTMGSMVCEVCQHECETAKELESHRKSCP FT IGSCPYCLNPAEATTSALQAHFKVCKLTSRFQDNLRKSLTVYEPKQGCYRTLSLFRYRS FT RCFVGLIWCILLVLELIVWAASAETQNLNPGWTDTAHGSGVIPMKTDLELDFSLPSSAS FT YTYRRMLQNPANEQEKIPFHLQIDKQVIHAEIQHLGHWMDATFNLKTAFHCYGSCEKYA FT YPWQTAGCFVEKDFEFENGWGCNPPDCPGVGTGCTACGVYLDKLKSVGKVFKIVSLRYT FT RRACIQLGTEQTCKNVDSNDCLITTSVKVCLIGTISKFQPSDTLLFLGPLEQGGLIFKQ FT WCTTTCQFGDPGDIMSTPTGMKCPELNGSFRKKCSFATTPVCQFDGNTVSGYKRMIATK FT DSFQSFNVTEPHISASALEWIDPDSSLRDHINVIVARDISFQDLGETPCQVDLTTSSID FT GAWGSGVGFNLVCSVSLTECSTFLTSIKACDSAMCYGSTTANLLRGQNTVYIVGKGGHS FT GSKFMCCHDTKCSSAGLTAAAPHLDRVTGYNQADSDKIFDDGAPECGVSCWFKKSGEWI FT LGVLNGNWMVVAVLVALLILSIFLFALCCPRRASYKKEHRP" XX SQ Sequence 3682 BP; 1128 A; 698 C; 762 G; 1094 T; 0 other; tagtagtaga ctccgcaaga agaagcaaat acagataaat atggaaaaat ctagtccagt 60 ttgtctgtat ctgcttcttc agggtctact actatggagt agcgggagag ccagaaacct 120 taatgaactt aagatggagt gtccccatac tattggttta ggtcaaggtc tagttgttgg 180 ctcagtggaa ttgccaccag tgccggtgca gcatgttgag aatttaaaac tagagagttc 240 ttgtaacttt gatttgcaca ccagtactgc aacacagcag tcattcacaa agtggacttg 300 ggaaacaaaa aatgatcttg cagaaaatac ccaggcatca tccacaagct accagacaaa 360 gagcagtgag gtaaacttaa gaggtttatg tctagtaccg actctggtca tagagacagc 420 tgcacggact agaaagacaa ttgcatgttt tgacctatca tgtaatcaaa cagtgtgcca 480 acccactgtt tttttaatca gtccaatcca aacatgtatt acgacaaaaa gctgtctttt 540 aggccttggc aatcagagaa tccaagtgaa ctatgaaaaa acttactgtg tttcaggtca 600 attagtcgaa ggtgtatgtt ttaatcctat ccataccatg gccctttcac aaccgagtca 660 tacttatgat atagttacta tgatggtccg ctgttttcta attgtaaaga aagccactac 720 aggtgacacc ctgaaaattg aaaagaattt tgagacactg gtccaaaaaa acggttgcac 780 aagcaacaat tttcaaggct attacatctg tttggtagga agtagctcag aaccattgta 840 tgtccctacg cttgatgatt acaggtcggc tgaagtgtta tcaaggatgg catttgcccc 900 acatggagaa gatcatgata ttgaacgaaa tgcagttagt gcaatgagga tcgtcggtaa 960 agtgactgga aaagccccgt caactgaatc atctgataca attcaaggta tcgccttctc 1020 tggaaatcca ttatacacct caacgggagt attgacagca aaagatgatc ctgtatatgt 1080 ctgggcacca gggattatta tggaagggaa ccactcaata tgtgataaga aaacattacc 1140 attgacatgg acaggattta tacctttgcc aggtgagatt gaaaaaacaa cacagtgtac 1200 agtattctgc acactagcgg gaccaggggc tgattgtgaa gcatattcag aaactgggat 1260 ttttaatatt agttctccta catgtttaat caaccgtgtc cagcggttcc gtggtgctga 1320 acagcaagtg aaatttgtct gccaaagagt agatatggac ataactgtat actgcaatgg 1380 aattaagaaa gtgattttga ccaagacttt agttattgga caatgtatat atacatttac 1440 cagcatattc tctttaatgc ctggagttgc tcactccctt gctgttgaac tttgtgttcc 1500 tggtcttcat ggatgggcca caatgttatt gctattaaca ttttgttttg gctggattct 1560 aattcctact attacactaa ttctactgaa aatattactt gcatttgcct atctctgttc 1620 taaatataac acagactcaa agtttaagat tttaattgaa aaagttaaac aagaatacca 1680 gaagacaatg ggctctatgg tttgtgaggt atgccagcat gagtgtgaga ctgccaaaga 1740 actagaatcc catagaaaaa gttgtcctat tggttcatgc ccatactgtt taaacccggc 1800 tgaggcaact acatctgccc ttcaagccca ttttaaggtg tgtaagttaa catccaggtt 1860 tcaggataat ttaagaaaat cattaaccgt ctatgaacca aagcagggtt gttatagaac 1920 cctctctctc tttagatatc gaagccggtg ttttgtggga ttaatttggt gtattctatt 1980 ggtattagaa ctgattgtct gggcagctag tgctgagaca caaaatttaa atcctggatg 2040 gacagataca gcacatggtt ctggagttat tcctatgaaa actgaccttg agttagattt 2100 ctccttacct tcctctgcaa gttacacata cagaagaatg cttcaaaatc ctgcaaatga 2160 acaagaaaaa ataccattcc atttacagat agataaacaa gttattcatg cagaaataca 2220 acatttgggc cactggatgg atgctacatt taatctaaaa acagcatttc actgttatgg 2280 ttcttgtgag aaatacgcct acccatggca aacagctggc tgttttgttg agaaggattt 2340 tgagttcgag aatggctggg gttgcaaccc accagattgc cccggggttg gtacaggttg 2400 tactgcatgt ggtgtctatt tagataaatt aaaatcagtg ggaaaggtgt ttaaaatagt 2460 ttccttaagg tatacacgga gggcttgcat tcaactaggt acagagcaaa cttgtaagaa 2520 tgtagatagc aacgattgtc tgattacaac atcagtgaaa gtgtgtctca ttggaactat 2580 ctctaaattt caaccctctg acacactttt gttcttaggg ccactagaac aaggagggct 2640 aatatttaag caatggtgca ctacaacttg tcaatttggg gacccaggag atattatgag 2700 cactcccaca ggaatgaaat gcccagaact aaatggatca ttcagaaaga aatgttcgtt 2760 tgccaccaca cctgtttgtc aatttgatgg aaatacagtg tctggctata aaagaatgat 2820 agcaacaaag gactcatttc aatcattcaa tgttactgag ccacatattt ctgctagtgc 2880 acttgagtgg atagatcctg atagttcctt acgagatcat atcaatgtta tcgttgcacg 2940 tgatatttcc ttccaagacc tcggtgaaac cccttgccaa gttgatttaa ccacctcatc 3000 aatagatggt gcatggggtt ctggtgtggg ctttaatctt gtgtgttcag ttagtctgac 3060 agaatgctct acgtttctga catcaatcaa ggcatgtgac tctgcgatgt gctatggatc 3120 tacaacagca aacctcctaa ggggccaaaa cacagtatat attgttggga agggtgggca 3180 ttcaggctca aagttcatgt gctgccatga tactaagtgc tctagtgctg gtttgactgc 3240 agctgcacca catttagacc gtgtgaccgg atacaatcaa gcagatagtg ataagatttt 3300 tgatgatggt gctcctgaat gtggagtttc atgttggttc aaaaaatcag gagaatggat 3360 tcttggggta ttaaatggta attggatggt agtagctgtt cttgttgcac ttcttatcct 3420 atctattttt ctgtttgcac tgtgctgccc acgacgggca agctataaaa aagaacatag 3480 gccataaggt tagatatatt tgactgcttt cctatcacag acttactaac ttactaacat 3540 atgtttatta aatattaatt cccttacata tatataatct ttatatatta tccactatat 3600 agaaaaaaaa ctaacacttt actaattatt tcactgcaca ccgatcatgc ctggactttt 3660 gttcctgcgg agcatactac ta 3682 //