ID AB669182; SV 1; linear; genomic RNA; STD; VRL; 5843 BP. XX AC AB669182; XX DT 08-SEP-2011 (Rel. 110, Created) DT 30-MAR-2012 (Rel. 112, Last updated, Version 2) XX DE White clover mosaic virus genomic RNA, complete genome, strain: WClMV-RC. XX KW . XX OS White clover mosaic virus OC Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; OC Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-5843 RA Ido Y., Nakahara K., Uyeda I.; RT ; RL Submitted (05-SEP-2011) to the INSDC. RL Contact:Kenji Nakahara Hokkaido University, Research Faculty of RL Agriculture; 9-Kita, 9-Nihi, Kita-ku, Sapporo, Hokkaido 060-8589, Japan XX RN [2] RA Ido Y., Nakahara K.S., Uyeda I.; RT "White clover mosaic virus-induced gene silencing in pea"; RL J. Gen. Plant Pathol. 78:127-132(2012). XX DR MD5; 685e880e7062213dc33a2e41d8900d9f. XX FH Key Location/Qualifiers FH FT source 1..5843 FT /organism="White clover mosaic virus" FT /strain="WClMV-RC" FT /mol_type="genomic RNA" FT /clone="pWClMV-RCi" FT /db_xref="taxon:12188" FT CDS 108..3992 FT /codon_start=1 FT /transl_table=1 FT /gene="RDR" FT /product="putative RNA replicase" FT /note="ORF 1" FT /db_xref="GOA:G1UJX7" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:G1UJX7" FT /protein_id="BAK78865.1" FT /translation="MAKVRAALDRITDPSVKAVLNEEAYSHIRPVLRESLTNNPYAIAP FT DAADTLEKYGIATNPFAVKVHSHGAVKSIENTLLERVGFNLPKEPCTFLFLKRSKLRYL FT RRGPSNKDIFINLAIEPRDLQRYEEDTLVESWTRITTRYAYISDTLHFFTRKMLADLFF FT HNPALDVLYATLVLPPEALHKHPSIEPDLYTINYNFNGFQYIPGNHGGGSYSHEFKQLE FT WLKVGHLKSPELCLTFQMIESIGANHLFMITRGIKITPRVRTFTKDSYVLFPQIFHPRN FT LNPSKPFPKVKAMQLFTYVKSVKNPTERDIYAKIRQLIKTSELSDYHPDEIVHIVNYFV FT FISKLDSINSYSDILSLPIWSKALLPIKTKITQLWEKLTGARAFNQLLDTLQWKTFTYS FT LEVVDFSTAPSARDCFIEDERLEIDTLEDEIPLNPNNNTSISPQSIEEAVENHPDLPWA FT PWLLILQAHNADCTEKQYDPENNLILPIQEINTLPKHQHPDIPTDLLTLLTKLHREPTT FT VSLDNHRARAYGSDVKNLRIGALLKKQSKDWLASFALKTENIEREVLMSVIHGAGGSGK FT SHAIQTWMRSLNRRDRHVTIILPTTDLRNDWTTKVPNLEQANFKTFEKALCQPCGKIIV FT FDDYSKLPQGYIEAFLAINQNVILAILTGDSKQSFHHESNEDAYTATLEPSIITYQPFC FT RYYLNITHRNKPDLANKLGVYSCSSGTTSFTMSSQALKGMPILSPSIMKKTALGEMGQK FT SMTYAGCQGLTTKAVQILLDTNTPLCSSNVIYTALSRAVDHIHFINTGPNSTDFWEKLD FT STPYLKTFLDCVREEKMNEIVAAEEPPAPVHAPTTHFPKVNPTTVVESYVHDLPEKHDR FT EIFSETHGHSNAVQTDNPVVQLFPHQQAKDETLYWATIEARLQCTSSEENLKEFHLKHD FT IGDILFLNYKQAMNLPQDPIPFNPDLWTLCRQEIENTYLKKSAAALVNAATRQSPDFDS FT HAIALFLKSQWVKKTEKIGCLKIKAGQTIAAFMQQTVMIYGTMARYMRKFRNQYCPRKI FT FVNCETTPADFNSFILDEWNFNRTCFSNDFTAFDQSQDGSILQFEVIKAKFHNIPEDVI FT EGYIQIKTHAKIFLGTLSIMRLSGEGPTFDANTEANIAYTHTKFNIPCDAAQVYAGDDM FT SIDYVASVKPSFNMIEHLMKLKGKPVFNTQTQGDFAEFCGWTISPKGIIKKPEKMNMSI FT ELQKNINKFHEVKRSYALDHAFAYQLGDELHELYNENEAEHHQLATRSLILAGQATALD FT ILDYGLRDLK" FT CDS 3995..4705 FT /codon_start=1 FT /transl_table=1 FT /gene="TGB1" FT /product="triple gene block protein 1" FT /db_xref="GOA:G1UJX8" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:G1UJX8" FT /protein_id="BAK78866.1" FT /translation="MDHIHHLLASHGFTRTRLAKSKPIVIHAIAGSGKSTVIRKILSDL FT PNARAYTLGKPDPYSLSNPTIKAFAQFKRGTLDILDEYGQLPFADLDSSFEFIFTDPYQ FT APTDNLFEPHYTLETTYRFGPNTCNLLNRAFQSNITSLVSQDNISFGSPYLVDPVGTIL FT AFQPDTYLILCLHQAPFFKVSEVIGYQWPTVTLYLACKISEIPEEDRHLLFIGLTRHTE FT SLLILGPDAFDSSP" FT CDS 4683..5033 FT /codon_start=1 FT /transl_table=1 FT /gene="TGB2" FT /product="triple gene block protein 2" FT /db_xref="GOA:G1UJX9" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:G1UJX9" FT /protein_id="BAK78867.1" FT /translation="MPLTPPPNPQKTYQIAVLALGLVLLAFVLISDHSPKVGDHLHNLP FT FGGEYKDGTKTIKYFQRPNQHSLSKTLAKSHNTTIFLIILGLIGTLHGLHYFSNNRRIS FT SSFHCVLCQNKH" FT CDS 4957..5157 FT /codon_start=1 FT /transl_table=1 FT /gene="TGB3" FT /product="triple gene block protein 3" FT /db_xref="GOA:G1UJY0" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:G1UJY0" FT /protein_id="BAK78868.1" FT /translation="MDFTTLVIIGVYLLVFIVYFAKINTSVCTISISGASVEISGCDNP FT ALFEILPNLRPFDHGLSLPSN" FT CDS 5164..5790 FT /codon_start=1 FT /transl_table=1 FT /gene="CP" FT /product="capsid protein" FT /note="ORF 5" FT /db_xref="GOA:G1UJY1" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:G1UJY1" FT /protein_id="BAK78869.1" FT /translation="MATTTATTPPSLTDIRALKYTSSTVSVASPAEIEAITKTWAETFK FT IPNDVLPLACWDLARAFADVGASSKSELTGDSAALAGVSRKQLAQAIKIHCTIRQFCMY FT FANVVWNIMLDTKTPPASWSKLGYKEESKFAGFDFFDGVNHPAALMPADGLIRGPSEAE FT LLAHQTAKQVALHRDAKRRGTNVVNSVEITNGRSDPIGPLITYPQ" FT polyA_site 5843 XX SQ Sequence 5843 BP; 1739 A; 1616 C; 977 G; 1511 T; 0 other; gaaaacaaga cgaaacgaac ccaaacagaa cgagccatcc gcagaaaaac taaaccatcc 60 ccggttttct ttggacataa ccaatccgta gtttgacaaa ggctgccatg gctaaagttc 120 gtgccgctct tgacagaatc actgatccat cggttaaagc tgtgctcaac gaagaagcat 180 acagccacat ccgaccggtt cttcgtgaat ccctaaccaa caacccctac gccatcgcac 240 ccgatgccgc cgacacgcta gagaagtatg gaattgctac taatccattc gcagtgaaag 300 tacattccca tggagcagtt aaaagtattg aaaacaccct acttgagaga gttgggttta 360 acttgccgaa agagccatgt accttcctct tcctcaaaag aagtaagctg cgttacctca 420 gacgtggacc aagtaacaaa gacatcttta tcaacctagc gatcgaaccc cgcgacctcc 480 aaagatacga ggaagacact ctggttgaga gttggacacg tatcaccact aggtatgcat 540 atattagtga cactttacac ttcttcacta ggaagatgtt ggctgacctt ttctttcata 600 atccggcctt agatgtatta tatgccactt tagtgctccc acccgaggcc ctccataaac 660 accctagcat agaacctgac ttatacacta tcaactataa cttcaatggt ttccaataca 720 tcccaggcaa tcatggtggt ggttcctact cccatgaatt caaacaactg gagtggctta 780 aagttggaca tctcaaatct ccagaactgt gcctcacctt ccagatgatt gaatctatcg 840 gtgccaacca ccttttcatg attacccgcg gtattaaaat aacccctagg gtcaggactt 900 tcaccaaaga ctcttacgtg ctctttcccc aaattttcca ccctcgaaac ctcaatccat 960 caaaaccatt cccgaaagtt aaagcaatgc aattattcac ttatgtaaag tctgtcaaga 1020 atcccaccga gcgagacatt tatgccaaaa tccgacagct aatcaagact tctgagctat 1080 ctgattatca tccagatgaa atcgtgcaca ttgtaaatta cttcgtgttt atctcaaagt 1140 tggatagcat taactcttat tctgacatac tctcactacc catttggtct aaagcattgc 1200 tacccatcaa aaccaaaatc acacaacttt gggaaaagct caccggagct agagctttca 1260 atcaactctt agatacactc caatggaaaa cattcactta ctctttagag gtagttgatt 1320 tctccacagc cccttcagcc cgagactgct tcattgaaga tgagagatta gagattgaca 1380 cacttgagga tgaaattccc ctaaacccaa acaacaacac ctcaataagt ccacaaagca 1440 ttgaggaggc agttgaaaac cacccggatt taccctgggc accatggtta ctcattttgc 1500 aggctcataa tgctgactgc actgaaaagc agtatgaccc tgagaataac ctcattcttc 1560 ctatacaaga gataaacacc ctccccaagc accaacaccc tgatatccca actgaccttc 1620 taacactcct aaccaaatta cacagagaac caaccacagt ctcacttgac aatcatcgag 1680 ctcgtgccta tggatctgac gtcaaaaatt tgcgaatagg cgctctactc aaaaaacaga 1740 gcaaagattg gttagctagt ttcgctctca aaacggaaaa tattgaacgt gaagttttga 1800 tgtctgttat ccatggtgcc ggtggctctg ggaaatcaca tgccattcaa acttggatgc 1860 gctccctgaa ccgaagagac cgtcatgtca caatcatttt accaacaaca gacctgcgga 1920 atgattggac taccaaagtg cccaatcttg agcaagcaaa tttcaaaact tttgagaaag 1980 ctctttgtca accttgtggt aaaattatag tgtttgacga ctactccaag cttcctcaag 2040 gctacatcga ggcattcctt gctatcaacc aaaatgtcat tttagccatc cttaccggag 2100 attctaagca gagctttcat catgaatcca atgaggatgc ctacactgcc accctagaac 2160 ctagcattat cacctaccaa cccttctgcc gctactacct aaacataacc catagaaaca 2220 aaccagacct agctaacaaa ctgggtgttt actcttgttc cagtggcacc acctccttca 2280 caatgtcatc ccaagccctc aagggtatgc ctattctctc ccccagtata atgaagaaaa 2340 ctgctcttgg agaaatgggc caaaaaagca tgacatacgc tggctgccaa ggtctcacaa 2400 ctaaagctgt ccaaattctc ttggatacca atacccccct gtgcagttcc aacgtcatat 2460 acactgctct cagccgtgct gttgaccaca tacatttcat caacactgga cccaactcaa 2520 cagacttctg ggaaaaactt gattccacac cctacctcaa aactttcttg gactgtgttc 2580 gagaagaaaa aatgaatgag atcgtcgctg ctgaagaacc acctgctcca gtgcatgctc 2640 ctaccaccca cttcccaaaa gtgaacccca ccacagtggt tgaatcatat gtccacgatc 2700 ttcccgaaaa acatgatcgt gagatctttt cagagactca tggtcactca aatgcagttc 2760 aaactgacaa ccctgtggtt caactctttc cccaccaaca agccaaagat gaaactcttt 2820 attgggctac catcgaagct agactacaat gcacttcatc tgaagaaaac cttaaagaat 2880 ttcatctcaa acatgacatt ggtgacattc ttttcctcaa ttataaacaa gccatgaacc 2940 ttcctcaaga tcccatacca tttaacccag acctatggac cctttgccgg caggaaattg 3000 aaaacacata cctcaagaaa agtgccgctg cccttgttaa tgctgccact cgccaatcac 3060 ctgatttcga ctcacatgcg atagcactct tcctcaaatc acaatgggtc aagaaaactg 3120 aaaaaattgg ttgcctcaaa atcaaagctg gccaaactat tgctgccttc atgcaacaaa 3180 ccgtcatgat ctatggtaca atggcccgat acatgagaaa atttagaaac caatattgcc 3240 ccaggaaaat cttcgtgaac tgtgaaacca caccagccga cttcaactct ttcatcctcg 3300 acgagtggaa tttcaacaga acttgctttt caaatgactt cactgcattt gatcaaagtc 3360 aagatggttc catcctccaa ttcgaagtca ttaaagcaaa gtttcacaac atacctgagg 3420 atgtcattga aggctacatc caaatcaaaa cacatgccaa gatcttcctg ggcaccctca 3480 gtatcatgag actctctggt gaaggtccca ctttcgatgc taacactgaa gccaacattg 3540 cttacacaca caccaagttt aacatacctt gcgatgctgc acaggtgtac gctggtgatg 3600 atatgtccat tgactacgtg gcttcagtca agcccagctt caacatgatt gaacatctga 3660 tgaaactcaa aggtaaacca gtttttaaca cacaaactca gggagacttt gctgaatttt 3720 gcgggtggac aatctcacca aaaggcatta tcaagaaacc ggaaaaaatg aacatgagca 3780 ttgaactcca aaagaacatc aacaagttcc atgaagtcaa aagaagttat gctctagacc 3840 atgccttcgc ataccaactt ggtgatgaat tacatgaact atacaatgag aatgaagcag 3900 aacaccacca acttgctaca aggtcactta ttctcgctgg tcaagctacc gccctagaca 3960 tccttgatta cgggttaaga gacctaaagt agcgatggat cacattcacc acctcctcgc 4020 ctcccacggt ttcacccgca ccagactcgc caaatccaaa cctatcgtca tccatgctat 4080 tgcaggctcc ggtaaatcta ctgtgatcag aaagattctc tcagacctac ccaacgctag 4140 agcttacacc ttaggtaaac cagaccccta ttctctctcc aaccccacaa ttaaagcttt 4200 cgcccaattc aaaagaggta cactcgacat cttggatgag tacggccaac tcccattcgc 4260 cgacttagat tcatctttcg agttcatctt cactgaccct taccaagcac caactgacaa 4320 tctcttcgaa cctcactaca cactagaaac cacctacaga tttggcccta acacttgtaa 4380 ccttctcaat cgagccttcc aatctaacat caccagcctt gtctcccagg ataacatttc 4440 atttggttca ccctacttag ttgacccagt aggtaccatc ctcgcgtttc aacctgacac 4500 ctacctaatc ctttgcttac atcaagcccc tttcttcaaa gtttcagaag tgattggcta 4560 tcagtggcct actgtaacgt tgtacttagc ctgcaagatt tctgagattc ctgaggaaga 4620 tcgtcacctc ctcttcattg gtctgactag acacactgaa tccctcctta ttctaggtcc 4680 tgatgccttt gactcctccc cctaatcccc agaaaaccta ccaaatagcc gtacttgctt 4740 taggattagt gctacttgcc tttgttctca tttccgatca ctctcccaaa gtcggtgatc 4800 atctgcacaa tcttcctttt ggaggtgaat acaaagacgg cactaaaact atcaagtatt 4860 tccaaagacc caaccaacat tccctttcca aaactcttgc taaatcccac aacaccacca 4920 ttttcctgat catcttaggt ctaattggca ccttgcatgg acttcactac tttagtaata 4980 ataggcgtat atcttctagt tttcattgtg tactttgcca aaataaacac tagcgtgtgt 5040 actattagta tatcaggagc ttctgttgaa atctcaggtt gcgacaaccc ggctctcttc 5100 gaaatcctcc caaatctcag accctttgac cacgggttaa gtttaccatc taattgaaat 5160 ccaatggcaa ccaccacagc aaccactcct ccatccttga cagacatccg agccctaaaa 5220 tacacttcct ccaccgtctc agtcgcctca cctgctgaaa ttgaagccat cactaaaacc 5280 tgggctgaaa cattcaaaat tccaaatgac gtcttgcctc tcgcttgttg ggatctggct 5340 cgtgctttcg ctgatgttgg cgcttcttct aagtctgaac ttactggtga ctctgctgct 5400 cttgcgggtg tttcacgaaa acaactggct caagctatca aaatccattg caccattcgc 5460 cagttctgca tgtacttcgc caatgttgtg tggaacatta tgttagatac caaaacaccg 5520 ccagcatcct ggtctaaact cggctataaa gaagagagca aatttgctgg ctttgacttc 5580 tttgatggtg tcaatcatcc tgctgcactc atgcctgcag acggcctcat ccgtggtcct 5640 tccgaagctg aactcttagc ccatcaaacc gcgaaacaag tggctctcca tcgcgacgca 5700 aaacgccgtg gcactaacgt tgtcaactct gttgaaatca ctaacggtcg ctccgaccct 5760 attggtcccc ttattaccta tccccagtaa ttgccttatc acttcactta atatgtgtgg 5820 ctttctgttt aataaaattt cag 5843 //