Dbfetch
ID AB636267; SV 1; linear; genomic RNA; STD; VRL; 6365 BP. XX AC AB636267; XX DT 04-SEP-2011 (Rel. 110, Created) DT 29-JAN-2015 (Rel. 123, Last updated, Version 2) XX DE Bamboo mosaic virus genomic RNA, complete genome, isolate: BaMv-Au. XX KW . XX OS Bamboo mosaic virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-6365 RA Hisamoto Y., Kobayashi M.; RT ; RL Submitted (31-MAY-2011) to the INSDC. RL Contact:Yoko Hisamoto The University of Tokyo, The University of Tokyo RL Chiba Forest, Graduate School of Agricultural and Life Sciences; Amatsu RL 770, Kamogawa, Chiba 299-5503, Japan XX RN [2] RA Hisamoto Y., Natsuaki T., Kobayashi M.; RT "A survey of bamboo mosaic virus and its modification to express foreign RT genes focusing on temperate strains"; RL Unpublished. XX DR MD5; 52ef13334fee31919193dcbfa6852f74. DR RFAM; RF00290; BaMV_CRE. XX FH Key Location/Qualifiers FH FT source 1..6365 FT /organism="Bamboo mosaic virus" FT /host="Arundinaria usawai" FT /isolate="BaMv-Au" FT /mol_type="genomic RNA" FT /country="Taiwan" FT /db_xref="taxon:35286" FT CDS 93..1811 FT /codon_start=1 FT /transl_table=1 FT /product="ORF1" FT /db_xref="GOA:G1UII7" FT /db_xref="InterPro:IPR002588" FT /db_xref="UniProtKB/TrEMBL:G1UII7" FT /protein_id="BAK64671.1" FT /translation="MALVSKVFDSITDPSLRAVLQEEAHSQVKQVLKDTALYSRYALLP FT TAANTLERYAIPHNPFSTKLHTHAAAKALENDLYRTASYLLPKERVSFLFMKPSKMQYF FT RRRGDVDTFINADIVAKDLARYPLETIYPRLPEITTKMAFIGDSLHYFQPEVLEHIFES FT SPQLETLLATIVLPPEATLRLKSLYPEIYTLHYMPQKFLYKPGGLSGGEYEHDYKDLTW FT LKIGXVTTASMCLTVDRVESKAANHLLLIRRGRLKLSTYRSYDTPEPLVVVPKIFLPPK FT YNAQKPITKTKANSWILYVKSAGEPKIRDVWAKLRQTIANSELNQYEPAELLLLTNYFY FT VLGKLDSITSFETLLGDNILKRLFRPAIAKIQELRHWVSGPTAFMQLYKALQLVDVDFT FT FEVTKNWETNQENHKEPELPKDAIDVLVQSLIGINYTDATTTEAASPNQQENESKPQST FT LPQPLQQTKCPEDAEASASLECKAAETAQEACKAGPSSNPTLNTSQEAPPSEPKNNEER FT TCPTSRELPWKAWLKLLKGLGFQGDQEQLDIEGDLIYPIKHIRHLPIEEFNSPIT" FT CDS 4217..4978 FT /codon_start=1 FT /transl_table=1 FT /product="ORF2" FT /db_xref="GOA:G1UII8" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:G1UII8" FT /protein_id="BAK64672.1" FT /translation="MDNRITDLLTRSGYARTSEPRGAGQQLVVHAVAGAGKTTLLREIL FT NTIPGVTIHTAGTPDPPNLTLNYIKGQEPPXPKKYTILDEYPARAKWPEEAWDMLIADN FT LQHTGPTTRPHYIKHTTYRLGPQTVKALQSLGYQLEFQHRVDQQDQGFSFTGLFDGPIY FT GQPITLDTAAHNLALAHGLPALQATQTRGLEYDTTTIISSTPLPTVKDKVGLYIAFTRH FT RKACHIRAPGVDPTRDVVSSHGPTSPSSQTT" FT CDS 4944..5303 FT /codon_start=1 FT /transl_table=1 FT /product="ORF3" FT /db_xref="GOA:D4QFG3" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:D4QFG3" FT /protein_id="BAK64673.1" FT /translation="MDQPLHLARPPDNTKAYLVLAIGVASALFLYTLTRNTLPHTGDNI FT HHLPHGGRYVDGTKGILYNSPTSSYPSSSLPFSTVIALATTLFLITRNILNPAQTTPRV FT YAPLCLHCHRSHPPC" FT CDS 5297..5455 FT /codon_start=1 FT /transl_table=1 FT /product="ORF4" FT /db_xref="GOA:D4QFG4" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:D4QFG4" FT /protein_id="BAK64674.1" FT /translation="MLNTDTLCIILFILLLGVLYNILHQHQPPPCEIVINGHTISIRGN FT CYHTTSS" FT CDS 5497..6225 FT /codon_start=1 FT /transl_table=1 FT /product="ORF5" FT /db_xref="GOA:G1UIJ1" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:G1UIJ1" FT /protein_id="BAK64675.1" FT /translation="MSGTGTGTGRGTGTGAGGTGGTGGTGGGGTGRGQQAAAQPWEAKF FT TKDDLAAIEPKPASANVPNTKQWTSIQAGLIKAGATDANFMKVLLGLSLEAFDRGSSEA FT TTWDGVTEGVEHRAAANAIKEANCPIHKVTYYLAKPTFAIRQSKNLPPANYAKKNVPSQ FT YKWCAFDAFDGLYDPTCLASELPYDAPSEIDRMAYATFKTIQIKTANDQKGFNLNYNPN FT VTQARLPXAPLPALPEPTSD" XX SQ Sequence 6365 BP; 1929 A; 1897 C; 1339 G; 1191 T; 9 other; gaaaagcatt ccaaacaaac gaaaaggaaa caaaagacat agaaaacgaa ctgccaattg 60 tcccctacaa tcgccccgcg cgtgcggcaa caatggcact cgtctctaaa gtctttgata 120 gcatcaccga cccatccctg agggctgtac tccaagaaga agcgcattca caggtgaaac 180 aggtgctcaa agatacagcg ctgtactcca gatacgccct cctcccaact gctgcgaaca 240 cgctcgaacg gtacgccatc ccccacaacc cgttcagcac aaaattgcat acacacgcag 300 cagcaaaagc ccttgagaat gacctctacc ggacagcctc atatctcctc ccaaaagaaa 360 gagtgtcatt ccttttcatg aagccgtcta agatgcaata tttccggaga agaggagacg 420 tcgacacctt catcaatgct gacatcgtcg ccaaggacct cgccaggtat cctctggaga 480 ctatttaccc ccgcctccct gaaatcacga caaagatggc tttcattggg gatagcctgc 540 actacttcca gcctgaggtg ctggaacaca ttttcgagag ctccccacaa ctagagacct 600 tgctcgccac aatcgtcctc ccccccgaag ccacacttag gcttaagagt ctatacccag 660 aaatctacac gctacactac atgccccaaa aattcctcta caaacctggg gggctttcgg 720 gcggggaata cgagcatgat tataaagacc tgacctggct aaaaattggg cangtcacaa 780 ctgcctccat gtgcctnaca gtcgaccggg tggagtctaa agcggccaat catctactac 840 tcatacgtcg cggaaggctc aagctcagca cttacagatc ttacgacacc cctgaacctt 900 tagtcgtagt gccaaaaatc ttcctccccc caaaatacaa tgcacaaaaa cccattacca 960 agacaaaagc gaactcgtgg attctctacg tgaagtcggc tggggagcca aaaatcagag 1020 atgtttgggc caagctcagg caaaccatag cgaactccga acttaaccaa tatgagcctg 1080 cggagctgct cctcctaaca aactacttct atgtgcttgg caagttagac tccatcacat 1140 cctttgaaac cctgctcggc gacaacatac tcaagcgcct cttcagaccg gccatagcta 1200 aaattcaaga actcagacac tgggttagtg gcccaacagc cttcatgcaa ctttacaagg 1260 cgctgcagct cgtcgacgtc gacttcacct ttgaggtcac aaagaactgg gaaacaaacc 1320 aggaaaacca caaggaacct gaactcccaa aagatgccat tgatgtactc gtccaatccc 1380 tcatcggcat taactacaca gacgcgacaa ccactgaagc cgcaagccct aaccaacaag 1440 aaaacgaatc aaaaccccaa tcgaccctcc cacagcctct ccagcaaacc aagtgccccg 1500 aggatgcgga ggcgtctgcc tcactagaat gtaaagcggc cgaaactgcg caagaagcct 1560 gcaaagcagg gcccagttca aaccccactc tcaacaccag ccaagaggcg cccccatcag 1620 aacccaaaaa caacgaggag cgaacatgcc ccacatcgcg tgaactacca tggaaggcat 1680 ggctcaaatt gctcaagggc ctcggattcc aaggcgacca ggagcagttg gacattgaag 1740 gggacctcat ttacccaatt aaacacatcc ggcacttacc aattgaggag ttcaacagcc 1800 caatcacatg acacntgagg aaaatgaacc ggatgccatg caaatattcc cctgacatcg 1860 aaagagcagc cgcattcgca cgagacgtaa tgagcaataa aacaggtgct atcctcccga 1920 agcaatccca cgagtggaag actacactca aaaggaaatg caaactagcc cctcgacgaa 1980 ccctgatttc tgtgatacat ggtgcgggcg gcagcggaaa atcaagagcc ctgcaagaat 2040 acatgaggaa caacaaggag gaccccatcg tcaccatcct cccgacgaat gagctaaggg 2100 cggattggaa agctaaactg cccgctcacg atcctgacat gttcatgaca ttcgagaacg 2160 cactgctgat cccaaaaggc aacgtggtca tcatggacga ctacactaaa ctaccacgcg 2220 ggtacataga ggcgtacgtg caaaattctc caatgctaga cctgctgata ctcacagggg 2280 accctaggca atccgaacac ttcgaatcgg ctgaagggaa cacgatcaat gaccttagcc 2340 cctccccagc tgtcttcagc gcatacgccc gctactacat caacgcaacc cacaggaata 2400 accaggactt ggcaaatgcc ttgggggtct actcagagaa acaagggaaa acacgaatat 2460 cagtcagcaa ccacattgaa gacgggcgtc acacattggt tcccagccaa atcaaacaaa 2520 gaaactacgt ctctatgggc aggaaaaccc naacctacgc gggctgtcaa gggataaccg 2580 cctcgcgtgt acaggtcatc atcgacaatg acactgcaaa gtgctcacat caggtcctat 2640 acacagcttt ctccagggcc gcggatgaaa tacacttttg caacactatg accgatgaaa 2700 agcaattctg ggcaaaagtg aagtgcacgc cgtacctaca ggcgatcctc aacctgacca 2760 atgaacactc cttgcctgac ccaaagcctg aaccagacga acctctggag cccaaagccc 2820 ccgtcaccca catcgccgtg gaaaatgtgg tgccacttgt agaagaaatc actgagcccc 2880 ttcccgagaa gcacgaccgg gaaatctact cagaaagcac tgggcactcc aactgtatcc 2940 aaactgagaa cgagtttatc caggccttcc aacaccaaca ggcaaaggat gaaactctat 3000 tctgggccac cattgaaaaa cgcatagtca cctcaactcc cgagtcaaac tggactgaat 3060 tcaagacaaa aaggccccta ggcgacatcc tgtggctggc ctataaggaa gccatgtgcc 3120 taccagcgga gcccatcaaa ttcgacccag atctctggtg gaaatgtgct gatgaagtgc 3180 aaaacaagta cctacagaaa ccgcttcaca tgatcaaaaa tggaatactt agacaaagcc 3240 cagactttgg agagcgccac attgctctat ttttaaagtc gcagtgggtg aaaaagaacg 3300 agaaaattgg gacagtcaat gtcaaggcag gccaaaccat cgctgcattc taccagagca 3360 ccgtcatgat ctttggcact atggcgcgtt acatgcgacg cgtccgtgaa aagttctgcc 3420 caaagaacat tctaattaac tgcgaaattg accagccaac agcatcaaag tgggtggaca 3480 cgcactggaa attcgacagg ctggcataca caaatgactt cgaggcgtat gaccagtcgc 3540 aggatggagc tatgttgcaa ttcgaagtga tgaaggcaag gcaccatgat ctgcctgccg 3600 acttgattga gtcctacatt gaacttaagc taaacgcaaa aatattccta ggcacccttg 3660 gcatcatgag attgactgga gaggggccaa catttgacgc caacactgaa tgcaacatcg 3720 cttacacgca tgctcgattc cacataccca gaggcactgc acaactatac gcaggagatg 3780 attgcgccct caactgcgaa cctgaagaaa gagaatcatt caaacccttg gctgcacaat 3840 tcaccctcaa atcaaagcca gtgaccataa gacaaggaaa aggctcctgg cccgagtttt 3900 gcggtaatat cattactccc tacggctatc ttaaacaccc tcggaaaaca tgggctgcac 3960 tgcacaaggc caagctccaa gggaaagatg aattgaagaa aaccgccaca gcctacgcgc 4020 ccgacgtgct accaacatac gaactagggg atgcaataca cgacatattc actgacaacg 4080 agctgacctt ccattaccaa acaatcagaa ccctacacac agaggcccac actcgagttt 4140 tcaccaacca cgatgcaatc tttggtgaag aaggtttatt ctctagttaa gtaacctatt 4200 agtttaacaa ctaaccatgg ataaccggat aactgaccta ctcacaagat ctggctacgc 4260 gagaacatcc gagccaagag gtgccgggca gcagctggtc gtacacgcgg tggctggtgc 4320 cggtaagaca acgctactcc gcgaaatact aaacaccatt ccaggagtta caatacacac 4380 tgcaggcacc cccgacccac caaatctcac cctcaactac atcaaaggcc aagagccccc 4440 tngcccaaag aagtacacta tcctagatga gtacccagcc agagccaagt ggccagagga 4500 ggcctgggac atgctgattg ccgacaacct acaacacaca ggccccacga ctcgccctca 4560 ctacataaaa cacactacct acagacttgg cccccaaaca gttaaagcgt tgcaaagcct 4620 tggntaccaa ctagaattcc aacatcgggt agaccagcag gatcagggct tctcattcac 4680 tggactattc gacggcccaa tctacgggca accgataaca cttgacactg cagcccacaa 4740 cctggccttg gcccacggat taccagcctt acaagcaacc caaacgagag ggctagaata 4800 cgacaccact accattatct ctagcacccc tctgccaaca gtcaaggaca aggtgggcct 4860 gtacattgca ttcaccaggc accgaaaagc ctgccacatt cgggcacccg gggttgaccc 4920 cacacgtgac gtggtctcct cccatggacc aacctctcca tctagccaga ccacctgaca 4980 acacgaaagc ctacttagta ttagctatag gagtagcgag tgcattgttc ctctacacgc 5040 taacccgcaa cactctccca cacacaggcg acaacatcca ccacttgccg cacgggggca 5100 ggtacgtgga cggcaccaaa gggattctct acaacagccc cacctcgtca tacccatcct 5160 cgtctctccc tttctccacg gtcattgcat tagccacaac ccttttcctc atcactagaa 5220 acatcctcaa tccagcccaa accacaccca gagtctacgc acccctttgc ctgcattgtc 5280 accggagtca cccaccatgc taaacactga cacactctgc atcattctgt tcatactact 5340 attaggcgta ctttataata tacttcatca gcatcagccc ccaccatgcg agatagtaat 5400 aaacgggcac actatatcca ttagaggcaa ctgctaccac actacctcca gctagggttt 5460 gttaagtttc ctttgcttgt aaattaaaca ctaaagatgt ctggaactgg aacaggaaca 5520 gggcgaggga ccggaactgg tgcgggaggc actggaggca caggcggcac aggcggcgga 5580 ggaacaggta gagggcaaca agccgcggct cagccttggg aagcgaagtt caccaaagac 5640 gacctggctg caatcgagcc aaaacctgcc tcagcgaatg tgccaaacac gaagcagtgg 5700 accagcattc aagctggact cattaaggcc ggagccaccg acgcaaactt catgaaagtg 5760 cttctcggcc tcagcctcga agccttcgac aggggttcat cagaggccac cacctgggac 5820 ggagttactg agggtgtgga gcatcgcgcs gcagccaacg cgatcaagga ggcaaactgc 5880 ccaatacaca aagtcaccta ctacctagcc aaaccgacgt tcgccatyag acaatcaaag 5940 aaccttcccc cagcaaacta tgcaaagaag aatgtgccat cacaatacaa atggtgtgct 6000 tttgatgctt ttgatggcct atatgacccc acctgccttg cctcagaact accctacgat 6060 gccccctcag aaatagatcg aatggcatac gccacattca aaaccataca gatcaaaacc 6120 gccaatgacc agaaagggtt taacctcaat tataacccta acgtcaccca ggctcgactc 6180 cccarcgcgc ccctaccagc tcttcctgaa ccaacgtcag actaaacgtt gcatggtcgt 6240 aaaacatgcc cggcttaccg tgagccgcct ttgaaagaaa ggtttacacg gactctgttg 6300 cgttacgcac gtacctaact cgtgccagca gaataaagac cttttggttt ctacagtttt 6360 ttcca 6365 //