ID AB636266; SV 1; linear; genomic RNA; STD; VRL; 6364 BP. XX AC AB636266; XX DT 04-SEP-2011 (Rel. 110, Created) DT 29-JAN-2015 (Rel. 123, Last updated, Version 2) XX DE Bamboo mosaic virus genomic RNA, complete genome, isolate: BaMV-Pu. XX KW . XX OS Bamboo mosaic virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-6364 RA Hisamoto Y., Kobayashi M.; RT ; RL Submitted (31-MAY-2011) to the INSDC. RL Contact:Yoko Hisamoto The University of Tokyo, The University of Tokyo RL Chiba Forest, Graduate School of Agricultural and Life Sciences; Amatsu RL 770, Kamogawa, Chiba 299-5503, Japan XX RN [2] RA Hisamoto Y., Natsuaki T., Kobayashi M.; RT "A survey of bamboo mosaic virus and its modification to express foreign RT genes focusing on temperate strains"; RL Unpublished. XX DR MD5; 5fb5dd3e7712188277173b601daab75b. DR RFAM; RF00290; BaMV_CRE. XX FH Key Location/Qualifiers FH FT source 1..6364 FT /organism="Bamboo mosaic virus" FT /host="Pseudosasa usawai" FT /isolate="BaMV-Pu" FT /mol_type="genomic RNA" FT /country="Taiwan" FT /db_xref="taxon:35286" FT CDS 93..4190 FT /codon_start=1 FT /transl_table=1 FT /product="ORF1" FT /db_xref="GOA:G1UII2" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:G1UII2" FT /protein_id="BAK64666.1" FT /translation="MALVSKVFDSITDPSLRAVLQEEAHSQVKQVLKDTALYSRYALLP FT TAANTLERYAIPHNPFSTKLHTHAAAKALENDLYRTASYLLPKERVSFLFMKPSKMQYF FT RRRGDVDTFINADIVAKDLARYPLETIYPRLPEITTKMAFIGDSLHYFQPEVLEHIFEN FT SPQLETLLATIVLPPEATLRLKSLYPEIYTLHYMPQKFLYKPGGLSGGEYEHDYKDLTW FT LKIGHVTTASMCLTVDRVESKAANHLLLIRRGRLKLSTYRSYDTPEPLVVVPKIFLPPK FT YNAQKPITKTKANSWILYVKSAGEPKIRDVWAKLRQTIANSELNQYEPAELLLLTNYFY FT VLGKLDSITSFETLLGDNILKRLFRPAIAKIQELRHWVSGPTAFMQLYKALQLVDVDFT FT FEVTKNWETKQENHKEPELPKDAIDVLIQSLIGINYTDATTAEDTSSNQQESESKPQLN FT LPQPLQQTKCPEDAEAPAPLEWEAAKTVQEACEAGPSSNPTLNTSQEAPPSELKNSEEQ FT TCPTLRELPWKAWLKLLRGLGFQGDLEQLDIEGDLIYPIKHIRHLPIEEFNSPITVILR FT KMNRMPCKYSPDIERAAAFARDVMSNKTGAILPKQSHEWKTTLKRKCKLAPRQTLISVI FT HGAGGSGKSRALQEYMRNNKEDPIVTILPTNELRADWKAKLPAHDPDMFMTFENALLIP FT KGNVVIMDDYTKLPRGYIEAYVQNSPMLDLLILTGDPRQSEHFESAEGNTINDLSPSPV FT IFSAYSRYYINATHRNNQDLANALGVYSEKQGKTRISVSNHIEDGRHTLVPSQIKQRNY FT VSMGRKTSTYAGCQGITASRVQVIIDNDTAKCSHQVLYTAFSRAADEIHFCNTMTDEKQ FT FWAKVKCTPYLQAILNLTKEHSLPDPKPEPDEPLEPKAPVTHIAVENVVPLVEEITEPL FT PEKHDREIYSESTGHSNCIQTENEFIQAFQHQQAKDETLFWATIEKRIVTSTPESNWTE FT FRTKRPXGDILWLAYKEAMCLPAEPIKFDPDLWWKCADEVQNKYLQKPLHMIKNGILRQ FT SPDFGERHIALFLKSQWVKKNEKIGTVNVKAGQTIAAFYQSTVMIFGTMARYMRRVREK FT FCPKNILINCEIDQPTASKWVDTHWKFDRLAYTNDFEAYDQSQDGAMLQFEVMKARHHD FT LPADLIESYIELKLNAKIFLGTLGIMRLTGEGPTFDANTECNIAYTHARFHIPRGTAQL FT YAGDDCALNCEPEERESFKPLAAQFTLKSKPVTIKQGKGSWPEFCGNIITPYGYLKHPR FT KTWATLHKAKLQGKDELKKTATAYALDVLPTYELGDAIHDIFTDNELTFHYQTIRTLHT FT EAHXRVFTNHDAIFGEEGLFSS" FT CDS 4217..4978 FT /codon_start=1 FT /transl_table=1 FT /product="ORF2" FT /db_xref="GOA:G1UII3" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:G1UII3" FT /protein_id="BAK64667.1" FT /translation="MDNRITDLLTRSGYTRTSEPRGAGQQLVVHAVAGAGKTTLLRAIL FT NTIPGVTIHTAGTPDPPNLTLNYIKGQEPPCPKKYTILDEYPARAKWPEEAWDMLIADN FT LQHTGPTTRPHYIKHTTYRLGPQTVKALQSLGYQLEFQHRVDQQDQGFSFTGLFDGPIY FT GQPITLDTAAHNLALAHGLPALQATQTRGLEYDTTTIISSTPLPTVKDKVGLYIAFTRH FT RKACHIRAPGVDPTRDVASSHGPTSSSSQTT" FT CDS 4944..5303 FT /codon_start=1 FT /transl_table=1 FT /product="ORF3" FT /db_xref="GOA:G1UII4" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:G1UII4" FT /protein_id="BAK64668.1" FT /translation="MDQPLHLARPPDNTKAYLVLAIGVASALFLYTLTRNTLPHTGDNI FT HHLPHGGRYVDGTKGILYNSPTSSYPSSSLPFSMVIALATTLFFITRNILNPAPTTPRV FT YAPLCLHCHRSHPPC" FT CDS 5297..5455 FT /codon_start=1 FT /transl_table=1 FT /product="ORF4" FT /db_xref="GOA:G1UII5" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:G1UII5" FT /protein_id="BAK64669.1" FT /translation="MLNTDTLCIILLILILGILYNILQQHRPPPCEITINGHTISIRGN FT CYHTTSS" FT CDS 5496..6224 FT /codon_start=1 FT /transl_table=1 FT /product="ORF5" FT /db_xref="GOA:G1UII6" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:G1UII6" FT /protein_id="BAK64670.1" FT /translation="MSGTGTGTGRGTGTGAGGTGNTGGTGGGGTGRGQQAVAQPWEAKF FT TKDDLAAIEPKXASANVPNTKQWTSIQAGLIKAGATDANFMKVLLGLSLEAFDRGSSEA FT TTWDGATEGVEHRAAANAIKEANCPIHKVTYYLAKPTFAIRQSKNLPPANYAKKNVPSQ FT YKWCAFDAFDGLYDPTCLASELPYDAPSEIDRMAYATFKTIQIKTANDQKGFNLNYNPN FT VTHARLPNAPLPTLPQPTSD" XX SQ Sequence 6364 BP; 1936 A; 1878 C; 1337 G; 1199 T; 14 other; gaaaagcatt ccaaacaaac gaaaaggaaa caaaagacat agaaaacgaa ctgccaattg 60 tcccctacaa tcgccccgcg cgtgcggcaa caatggcact cgtctctaaa gtctttgata 120 gcatcaccga cccatccctg agggctgtac tccaagaaga agcgcattca caggtgaaac 180 aggtgctcaa agatacagcg ctgtactcca gatacgccct cctcccaact gctgcgaaca 240 cgctcgaacg gtacgccatc ccccacaacc cgttcagcac aaaattgcat acacacgcag 300 cagcaaaagc ccttgagaat gacctctacc gaacagcctc atatctcctc ccaaaagaaa 360 gagtgtcatt ccttttcatg aagccgtcta agatgcaata tttccggaga aggggagacg 420 ttgacacctt catcaatgct gacattgtcg ctaaggacct tgccaggtat cctctggaga 480 ctatttaccc ccgcctcccg gaaatcacaa caaagatggc tttcattggg gatagcctgc 540 actacttcca gcctgaggtg ctggagcaca ttttcgagaa ctccccacaa ctagagaccc 600 tgctcgccac gatcgtcctc ccccccgaag ccacacttag gcttaagagt ctatacccag 660 aaatctacac gctacattac atgccccaaa agttcctcta caaacctggg ggactctcag 720 gcggggaata cgagcacgac tacaaggacc tgacctggct gaaaattggg catgtcacaa 780 ctgcctctat gtgtctcaca gtcgaccggg tggagtctaa agcggccaat cacctactac 840 tcatacgtcg cggaaggctc aaactaagca cttacagatc ttacgacacc cccgaacctt 900 tagtcgtggt gccaaaaatc ttcctccccc caaaatacaa cgcacaaaaa cccattacca 960 agacaaaagc aaactcatgg attctctacg tgaagtcagc tggggagcca aaaatcagag 1020 atgtttgggc caagcttagg caaacgatag cgaactccga acttaaccaa tatgaacctg 1080 cggagctgct actactaaca aactacttct atgtgctggg caagttagac tccatcacgt 1140 cctttgaaac cctgctcggc gacaacatac tcaagcgtct cttcagaccg gccatcgcca 1200 aaattcaaga actcagacac tgggttagtg gcccaacagc cttcatgcaa ctttacaagg 1260 cgctgcaact cgttgatgtc gacttcacct ttgaggtcac aaagaactgg gaaacaaaac 1320 aggaaaacca caaggaacct gaactcccaa aagatgccat tgatgtgctc atccaatccc 1380 tcattggtat caactacaca gacgcgacaa ccgctgagga cacaagctct aatcaacaag 1440 aaagcgaatc aaaaccccaa ttgaacctcc cacagcctct ccagcaaacc aagtgccccg 1500 aggatgcgga ggcacctgct ccactggaat gggaagcggc caaaactgtg caagaagcct 1560 gcgaagcagg gcccagttca aaccccactc tcaataccag ccaggaggcg cccccatcag 1620 aacttaaaaa cagcgaggag caaacatgtc ccacattgcg tgaactacca tggaaggcat 1680 ggctcaaact actcaggggc ctcggattcc aaggcgacct cgagcagttg gacattgaag 1740 gagacctcat ctacccgatt aaacacatcc gacacttacc aatcgaggag ttcaacagcc 1800 cgatcacagt gatcctgagg aaaatgaaca ggatgccatg caaatactcc ccagacatcg 1860 aaagagcagc cgcgttcgca cgagacgtaa tgagcaacaa aacgggggcc atcctcccga 1920 agcaatctca cgagtggaag actacactta aaaggaaatg caaactcgcc cctcgacaaa 1980 ccctgatttc tgtgatacat ggtgcgggcg gcagcggaaa atcaagggcc ctgcaagaat 2040 acatgaggaa caacaaggag gaccccatcg tcaccatcct cccgacgaat gagctaaggg 2100 ccgattggaa agctaaactg cccgctcacg atcctgacat gttcatgaca ttcgagaacg 2160 cactgctgat cccaaaaggc aacgtggtca tcatggayga ttacactaaa ctaccacgcg 2220 ggtacataga ggcgtacgtg caaaactccc caatgctaga cctgctcata ctcacggggg 2280 accctaggca atccgaacac ttcgaatcgg ccgaagggaa cacgatcaac gatctcagcc 2340 cctccccagt catcttcagc gcatactccc gctactacat taacgcaacc cacaggaaca 2400 accaggactt agcaaacgcc ttgggggttt actcagagaa acaagggaaa acgcgaatat 2460 cagtcagcaa tcacatagaa gacgggcgtc acacgttagt tcccagccaa atcaaacaaa 2520 gaaactacgt ctccatgggc aggaaaactt cgacctacgc gggctgtcaa gggataaccg 2580 cctcgcgtgt acaggtcatc atcgacaatg acactgcaaa gtgctcacat caggtcctat 2640 acacagcttt ctccagggcc gctgatgaaa tacacttctg taacactatg accgatgaaa 2700 aacaattctg ggcgaaagtg aagtgcacgc cgtatctaca ggcgatcctc aacctgacca 2760 aggaacactc cttgcctgac ccaaagcctg aaccagacga acccctggag cccaaagccc 2820 ccgtcaccca catcgccgtg gaaaatgtgg tgccactcgt agaagaaatc actgagcccc 2880 ttcccgagaa gcacgaccgg gaaatctact cagaaagcac cggacactcc aactgcatcc 2940 aaactgagaa cgagtttatc caggctttcc aacaccaaca ggcaaaggat gaaactctgt 3000 tctgggccac yattgaraaa cgcatagtca cttcaacccc tgagtcaaac tggactgaat 3060 tcagaacaaa aaggccccya ggcgacatcc tgtggctggc ctataaggaa gccatgtgcc 3120 tgccagcaga gcccatcaaa ttcgacccag ayctttggtg gaagtgtgct gatgaagtgc 3180 aaaataagta cctacagaaa cctcttcaca tgatcaaaaa cggaatactt agacaaagcc 3240 cagacttcgg agagcgccac attgccctat ttttaaagtc gcagtgggtg aaaaagaacg 3300 agaaaattgg gacagtcaat gtcaaagctg gccaaaccat cgctgcgttc taccagagca 3360 ccgtcatgat ctttggcacg atggcgcgtt acatgagacg cgtccgtgaa aagttctgcc 3420 caaagaacat cttaatcaac tgcgaaattg atcagcccac agcctcaaaa tgggtggaca 3480 cgcactggaa attcgacagg ttggcataca caaatgactt tgaggcatat gaccagtcgc 3540 aggatggggc catgttgcaa ttcgaagtga tgaaagcaag gcaccatgac ctgcctgctg 3600 acttgattga gtcctacatc gaacttaagc taaacgcaaa aatattccta ggcacccttg 3660 gcatcatgag actgactgga gaggggccaa catttgacgc caacactgaa tgcaacatcg 3720 cttacacgca tgcccgattc cacataccca gaggcactgc acaactatac gcaggagatg 3780 attgcgccct caactgcgaa cctgaagaaa gagaatcatt caaacccttg gccgcacaat 3840 tcaccctcaa atcaaagccr gtgaccataa aacaagggaa aggatcctgg cccgagtttt 3900 gcggcaatat yatcactcct tacggctayc tcaaacaycc tcggaaaaca tgggctacac 3960 tgcacaaggc caagctccaa gggaaagatg aattaaagaa aaccgccacg gcctacgcgc 4020 tcgacgtgct accaacatac gaactagggg atgcaataca cgatatattc actgacaacg 4080 agctgacttt ccattaccaa acaatcagaa ctctacacac cgaggcccac rctcgagtct 4140 tcaccaacca cgatgcaatc tttggtgaag aaggtttatt ctctagttaa gtaacctatt 4200 agtttaacaa ctaaccatgg ataaccggat aactgaccta ctcacaagat ctggctacac 4260 aagaacatca gaaccaaggg gtgccgggca gcaattggtc gtgcacgcgg tggccggcgc 4320 cggtaagaca acgctactcc gcgcaatact aaacaccatt ccaggagtta caatacacac 4380 tgcgggcacc cccgacccac caaatctcac cctcaactac atcaaaggcc aagagccacc 4440 ttgcccaaag aagtacacta tcctagatga gtacccagct agagccaagt ggccggaaga 4500 ggcctgggac atgttgatag ctgacaacct ccaacacaca ggccccacga ctcgccctca 4560 ctacataaaa cacactacct acagacttgg cccccaaaca gttaaagcgt tgcaaagcct 4620 tgggtaccaa ctggaattcc aacatcgggt agaccagcaa gatcagggct tctcattcac 4680 tggactattc gacggcccwa tytacgggca accgataacg ctcgacacag cagcccacaa 4740 cctggccttg gcccacggat taccagcctt acaagcaacc caaacgagag ggctagaata 4800 cgacaccacc accattatct ctagcacccc tctgccaaca gtcaaggaca aggtgggcct 4860 gtacattgca ttcactaggc accgaaaagc ctgccacatt cgggcacctg gggtcgatcc 4920 cacacgtgac gtggcctcct cccatggacc aacctcttca tctagccaga ccacctgaca 4980 acactaaagc ctacttagta ttagctatag gagtagcgag tgcattgttc ctctatacac 5040 taacccgcaa cactctccca cacacaggcg acaacatcca ccacttgcca cacgggggca 5100 ggtacgtgga cggcaccaaa gggattcttt acaatagccc cacctcgtca tatccatcct 5160 cgtctctccc tttttccatg gttatcgcat tagccacaac cctcttcttc atcactagaa 5220 acatcctcaa tccagcccca accacgccca gagtctacgc acccctttgc ttgcattgtc 5280 accgaagtca cccaccatgc taaacactga cacgctctgc atcattctgc tcatattaat 5340 attaggcata ctttataata tacttcaaca gcatcggccc ccaccatgtg agataacaat 5400 aaacgggcac actatatcca ttagaggcaa ctgctaccac actacctcca gctagggttt 5460 gttaagtttc cattgtttgt aaattaaaca ctaaaatgtc tggaactgga acaggaactg 5520 ggcgagggac cgggactggt gcaggaggca ctggaaacac aggcggcaca ggcggcggag 5580 gaacaggtag agggcaacaa gccgtggccc agccttggga agcgaagttc actaaagacg 5640 acctggctgc aatcgagcca aaacstgcat cagcaaatgt gccaaacacg aagcaatgga 5700 ccagcattca agctggactc attaaggccg gagccacaga cgcgaacttc atgaaagtgc 5760 ttctcggcct cagccttgaa gccttcgaca ggggttcatc agaggccacc acctgggacg 5820 gagctaccga gggcgtggag catcgcgcgg cagccaatgc aattaaggag gcaaactgcc 5880 caatacacaa agtcacctac tacttagcca aaccgacgtt tgccatcaga caatcgaaaa 5940 accttccccc agcaaactat gcaaagaaga atgtgccatc acaatacaaa tggtgtgctt 6000 ttgacgcttt tgatggccta tatgacccca cctgccttgc ctcagaacta ccctacgatg 6060 ccccctcaga aatagatcgg atggcgtacg ctacattcaa aaccatacag atcaagaccg 6120 ccaatgacca gaaagggttt aacctcaatt ataaccctaa cgtcactcac gcccgactcc 6180 ccaacgcgcc cctaccaact cttccccaac caacgtcaga ctaaacgttg catggtcgta 6240 aaacatgccc ggcttaccgt gagccgcctt tgaaagaaag gtttacacgg actctgttgc 6300 gttacgcacg tacctaactc gtgccagcag aataaagacc ttttggtttc tacagtyttt 6360 tcca 6364 //