Dbfetch
ID AB636264; SV 1; circular; genomic DNA; STD; VRL; 2781 BP. XX AC AB636264; XX DT 02-JUN-2011 (Rel. 109, Created) DT 02-JUN-2011 (Rel. 109, Last updated, Version 1) XX DE Tomato yellow leaf curl virus DNA, complete genome, strain: TYLCV-YS. XX KW . XX OS Tomato yellow leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2781 RA Chung B.N., Choi H.S., Yang E.Y.; RT ; RL Submitted (31-MAY-2011) to the INSDC. RL Contact:Bong Nam Chung National Institute of Horticultural and Herbal RL Science, Horticultural and Herbal Environment Department; 540-41, top-dong, RL kwonsun-gu, Suwon 441-440, South Korea XX RN [2] RA Chung B.N.; RT "TYLCV isolates showing different pathotype"; RL Unpublished. XX DR MD5; db7dd66ac8d624b2bb82bfc5ac566faf. XX FH Key Location/Qualifiers FH FT source 1..2781 FT /organism="Tomato yellow leaf curl virus" FT /host="Solanum lycopersicum" FT /strain="TYLCV-YS" FT /mol_type="genomic DNA" FT /country="South Korea:Yesan city" FT /collected_by="Bong Nam Chung" FT /collection_date="01-Jan-2011" FT /db_xref="taxon:10832" FT CDS 148..498 FT /codon_start=1 FT /transl_table=1 FT /gene="AV2" FT /product="AV2 protein" FT /db_xref="GOA:A6H4Y2" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:A6H4Y2" FT /protein_id="BAK33009.1" FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQAVEETYEPNTLGHDLIRDL FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV FT PEAQNIQNVSKP" FT CDS 308..1084 FT /codon_start=1 FT /transl_table=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:F5HTD1" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:F5HTD1" FT /protein_id="BAK33010.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAVPIVQGTNKRRSW FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKAQSYEQRDDIKHTGIVRCVSDVTRGSGITH FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGNSPMDFGQVFNMFDN FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFIINSHVTYNHQEAAKYE FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN" FT CDS complement(1081..1485) FT /codon_start=1 FT /transl_table=1 FT /gene="AC3" FT /product="AC3 protein" FT /db_xref="GOA:D3JXB1" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:D3JXB1" FT /protein_id="BAK33011.1" FT /translation="MDSRTGELITAPQAENGVFIWEINNPLYFKITEHSQRPFLMNHDI FT ISIQIRFNHNIRKVLGIHKCFLNFRIWTTLQPQTGRFLRVFRYQILKYLDSLGVISINN FT VIRAVDHVLYDVLENTINVTETHDIKYKFY" FT CDS complement(1226..1633) FT /codon_start=1 FT /transl_table=1 FT /gene="AC2" FT /product="AC2 protein" FT /db_xref="GOA:A5A3G5" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:A5A3G5" FT /protein_id="BAK33012.1" FT /translation="MQPSSPSTSHCSQVSIKVQHKIAKKKPIRRKRVDLDCGCSYYLHI FT NCNNHGFTHRGTHHCSSSREWRFYLGDKQSPLFQDNRTQPEAISNEPRHHFHSDKIQPQ FT HQEGIGDSQMFSQLPNLDDITASDWSFLKSI" FT CDS complement(1542..2615) FT /codon_start=1 FT /transl_table=1 FT /gene="AC1" FT /product="rep protein" FT /db_xref="GOA:F5HTD4" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:F5HTD4" FT /protein_id="BAK33013.1" FT /translation="MPPLFKIYAKNYFLTYPNCSLSKEEALSQLTNLETPTNKKYIKVC FT RELHENGEPHLHVLIQFEGKYQCKNQRFFDLVSPNRSAHFHPNIQAAKSSTDVKTYVEK FT DGDFIDFGVFQIDGRSARGGQQSANDAYAEALNSGSKSEALNILKEKAPKDYILQFHNL FT SSNLDRIFSPPLEVYVSPFLSSSFNQVPDELEEWVAENVVSSAARPWRPISIVIEGDSR FT TGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQS FT NTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNATFVTLYEPLFT FT SINQGPTQDSQEETHKA" FT CDS complement(2171..2464) FT /codon_start=1 FT /transl_table=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:D3JXB4" FT /protein_id="BAK33014.1" FT /translation="MGNHIYMCLSNSKANTNVRTNGSSTWYPQTGQHISIRTFRQLRAQ FT QMSRPTWKKTETSLILEFSKSMADQLEEVSNLPTTHMPRHSIQAVNPRPSIY" XX SQ Sequence 2781 BP; 758 A; 527 C; 610 G; 886 T; 0 other; accggatggc cgcgcctttt ctttttatgt ggtccccatg agggttccac agacgtcact 60 gtcaaccaat caaattgcat cctcaaacgt tagataagta tttatttgtc tttatatact 120 tggtccccaa gtaatttgtc ttgcactatg tgggatccac ttctaaatga atttcctgaa 180 tctgttcacg gatttcgttg tatgttagct attaaatatt tgcaggccgt tgaggaaact 240 tacgagccca atacattggg ccacgattta attagggatc ttatatctgt tgtaagggcc 300 cgtgactatg tcgaagcgac caggcgatat aatcatttcc acgcccgtct cgaaggttcg 360 ccgaaggctg aacttcgaca gcccatacag cagccgtgct gctgtcccca ttgtccaagg 420 cacaaacaag cgacgatcat ggacgtacag gcccatgtac cggaagccca gaatatacag 480 aatgtatcga agccctgatg ttcctcgtgg atgtgaaggc ccatgtaaag cccagtctta 540 tgagcaacgg gatgatatta agcatactgg tattgttcgt tgtgttagtg atgttactcg 600 tggatctgga attacccaca gagtgggtaa gaggttctgt gttaaatcga tatatttttt 660 aggtaaagtc tggatggatg aaaatattaa gaagcagaat cacactaatc aggtcatgtt 720 cttcttggtt cgtgatagaa ggccctatgg aaacagccca atggattttg gtcaggtttt 780 taatatgttc gataatgagc ccagtaccgc aaccgtgaag aatgatttgc gggataggtt 840 tcaagtgatg aggaaatttc atgctacagt tattggtggg ccctctggaa tgaaggaaca 900 ggcattagtt aagagatttt ttataattaa cagtcatgta acttataatc atcaggaggc 960 agccaagtat gagaaccata ctgaaaacgc cttgttattg tatatggcat gtacgcatgc 1020 ctctaatcca gtgtatgcaa ctatgaaaat acgcatctat ttctatgatt caatatcaaa 1080 ttaataaaat ttatatttta tatcatgagt ttctgttaca tttattgtgt tttcaagtac 1140 atcatacaat acatgatcaa ctgctctgat tacattatta attgaaatta caccaagact 1200 atctaaatac ttaagaattt gatatctaaa tactcttaag aaacgaccag tctgaggctg 1260 taatgtcgtc caaattcgga agttgagaaa acatttgtga atccccaata ccttcctgat 1320 gttgtggttg aatcttatct gaatggaaat gatgtcgtgg ttcattagaa atggcctctg 1380 gctgtgttct gttatcttga aatagagggg attgtttatc tcccagataa aaacgccatt 1440 ctctgcttga ggagcagtga tgagttcccc tgtgcgtgaa tccatgattg ttgcagttga 1500 tgtggaggta gtatgagcag ccacagtcta ggtctacacg cttacgcctt atgggtttct 1560 tcttggctat cttgtgttgg accttgattg atacttgtga acagtggctc gtagagggtg 1620 acgaaggttg cattcttgag agcccaattt ttcaaggata tgtttttttc ttcgtctaga 1680 tattccctat atgaggaggt aggtcctgga ttgcagagga agatagtggg aattccccct 1740 ttaatttgaa tgggcttccc gtactttgtg ttgctttgcc agtccctctg ggcccccatg 1800 aattccttga agtgctttaa ataatgcggg tctacgtcat caatgacgtt gtaccacgca 1860 tcattactgt acacctttgg gcttaggtct agatgtccac ataaataatt atgtgggcct 1920 agagacctgg cccacattgt tttgcctgtt ctgctatcac cctcaatgac aatacttatg 1980 ggtctccatg gccgcgcagc ggaagatacg acgttctcgg cgacccactc ttcaagttca 2040 tctggaactt gattaaaaga agaagaaaga aatggagaaa cataaacttc taaaggagga 2100 ctaaaaatcc tatctaaatt tgaacttaaa ttatgaaatt gtaaaatata gtcctttggg 2160 gccttctctt ttaatatatt gagggcctcg gatttactgc ctgaattgag tgcctcggca 2220 tatgcgtcgt tggcagattg ctgacctcct ctagctgatc tgccatcgat ttggaaaact 2280 ccaaaatcaa tgaagtctcc gtctttttcc acgtaggtct tgacatctgt tgagctctta 2340 gctgcctgaa tgttcggatg gaaatgtgct gacctgtttg gggataccag gtcgaagaac 2400 cgttggttct tacattggta tttgccttcg aattggataa gcacatgtag atgtggttcc 2460 ccattctcgt ggagttctct gcaaactttg atgtattttt tatttgttgg ggtttctagg 2520 tttgttaatt gggaaagggc ttcctcttta gagagagaac aattgggata tgttaggaaa 2580 taatttttgg catatatttt aaataaagga ggcatgttga aatgaattgg tgtccctcaa 2640 agctctatgg caatcggtgt atcggtgtct tacttatacc tggacaccta atggctattt 2700 ggtaattttg taaaagtaca attcaattca aaattcaaaa ttcaaaaatc aaatcattaa 2760 agcggccatc cgtataatat t 2781 //