ID AB628188; SV 1; linear; genomic RNA; STD; VRL; 6395 BP. XX AC AB628188; XX DT 30-OCT-2011 (Rel. 110, Created) DT 30-OCT-2011 (Rel. 110, Last updated, Version 1) XX DE Rehmannia mosaic virus genomic RNA, complete genome, isolate: Japanese. XX KW . XX OS Rehmannia mosaic virus OC Viruses; Riboviria; Virgaviridae; Tobamovirus. XX RN [1] RP 1-6395 RA Kubota K., Usugi T., Tomitaka Y., Matsushita Y., Higashiyama M., Kosaka Y., RA Tsuda S.; RT ; RL Submitted (06-MAY-2011) to the INSDC. RL Contact:Kenji Kubota National Agricultural Research Center; 3-1-1 RL Kannondai, Tsukuba, Ibaraki 305-8666, Japan XX RN [2] RA Kubota K., Usugi T., Tomitaka Y., Matsushita Y., Higashiyama M., Kosaka Y., RA Tsuda S.; RT "Characterization of Rehmannia mosaic virus isolated from pepper (Capsicum RT annuum) in Japan"; RL Unpublished. XX DR MD5; 9cc8c6cb0d66ff2ca98a2367259d8da3. DR EuropePMC; PMC4732330; 26823577. DR RFAM; RF01072; TMV_UPD-PK3. DR RFAM; RF01077; TLS-PK2. DR RFAM; RF01114; TMV_UPD-PK1. DR RFAM; RF01115; TMV_UPD-PK2. XX FH Key Location/Qualifiers FH FT source 1..6395 FT /organism="Rehmannia mosaic virus" FT /host="Capsicum annuum" FT /isolate="Japanese" FT /mol_type="genomic RNA" FT /db_xref="taxon:425279" FT CDS 72..4922 FT /codon_start=1 FT /transl_table=1 FT /transl_except=(pos:3420..3422,aa:OTHER) FT /product="183 kDa replicase" FT /db_xref="GOA:G5EKU9" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:G5EKU9" FT /protein_id="BAL04983.1" FT /translation="MAYTQTATTSALLDTVRGNNTLVNDLAKRRLYDSAVEEFNARDRR FT PKINFSKVISEEQTLIATRAYPEFQITFYNTQNAVHSLAGGLRSLELEYLMMQVPYGSL FT TYDIGGNFASHLFKGRAYVHCCMPNLDVRDIMRHEGQKDSIELYLSRLDRGNKVVPSFQ FT KEAFDKYAESPQDVVCHNTFQTCEHQQLQNSGRVYAIALHSIYDIPADEFGAALLRKNV FT HTCYAAFHFSESLLLEDSYVNLDEINACFSRDGDKLTFSFASESTLNYSHSYSNILKYV FT CKTYFPASNREVYMKEFLVTRVNTWFCKFSRIDTFLLYKGVAHKSVDSEQFYTAMEDAW FT HYKKTLAMCNSERILLEDSSSVNYWFPKMRDMVIVPLFDISLETSKRTRKEVLVSKDFV FT FTVLNHIRTYQAKALTYSNVLSFVESIRSRVIINGVTARSEWDVDKSLLQSLSMTFFLH FT TKLAVLKDDLMISKFSLGPKTVGQHIWDEISLAFGSAFPSIKERLLNRKLIKVAGDALE FT IRVPDLYVTFHDRLVTEYKASVDMPALDIRKRMEETEVMYNALSELSVLKESDKFDVDV FT FSQMCQNLEVDPMTAAKVIVAVMSNESGLTLTFEQPTEANVALALHDSEKASEGALVVT FT SRDVEEPSMKGSMARGELQLAGLIGDHPESSYTKNEEIESLEQFHMATAESLIRKQMSS FT IVYTGPIKVQQMKNFIDSLVASLSAAVSNLVKILKDTAAIDLETRQKFGVFDVVSRKWL FT IKPTAKSHAWGVVETHARKYHVALLEYNEQGIIACDSWRRVAVSSESVVYSDMAKLKTL FT RKLLHNGEPQVSTARVVLVDGVPGCGKTKEILSRVNFEEDLILVPGKQAAEMIKRRANA FT SGVIVATKDNVRTVDSFMMNYGKVARCQFKRLFIDEGLMLHTGCVNFLVSMSLCDIAYI FT YGDTQQIPYINRVTGFPYPAHFAKLEVDEVETRRTTLRCPADVTHYLNKRYEGFVMSTS FT SVKKSVSQEMVSGAATINPISKPLHGKVLTFTQSDKEALLSRGYSDVHTVHEVQGETYS FT DVSLVRLTPTPVSIISGDSPHVLVALSRHTCSLKYYTVVMDPLVSIIRDLEKLSTYLLD FT MYKVDAGTQXQLQIDSVFKGSNLFVAAPKTGDISDMQFYYDKCLPGNSTMMNNYDAVTM FT RLTDISLNVKDCILDMSKSVAAPKDSNIPLIPMVRTAAEMPRQTGLLENLVAMIKRNFN FT APELSGIVDIENTASLVVDRFFDSYLLKEKRKPNKNVSLFSRESLNRWLEKQEQATIGQ FT LADFDFVDLPAVDQYRHMIKAQPKQKLDTSIQTEYPALQTIVYHSKKINAIFGPLFSEL FT TRQLLDSVDSSRFLFFTRKTPAQIEEFFGDLDSHVPMDVLELDISKYDKSQNEFHCAVE FT YEIWRRLGFEDFLGEVWKQGHRKTTLKDYTAGIKTCIWYQRKSGDVTTFIGNTVIIAAC FT LASMLPMEKIIKGAFCGDDSLLYFPKGCEFPDVQQAANLMWNFEAKLFKKQYGYFCGRY FT VIHHDRGCIVYYDPLKLISKLGAKHIKDWDHLEEFRRSLCDVAVSLNNCAYYTQLDDAV FT WEVHKTAPAGSFVYKSLVKYLSDKVLFRSLFLDGSSC" FT CDS 72..3422 FT /codon_start=1 FT /transl_table=1 FT /product="126 kDa replicase" FT /db_xref="GOA:G5EKV0" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:G5EKV0" FT /protein_id="BAL04984.1" FT /translation="MAYTQTATTSALLDTVRGNNTLVNDLAKRRLYDSAVEEFNARDRR FT PKINFSKVISEEQTLIATRAYPEFQITFYNTQNAVHSLAGGLRSLELEYLMMQVPYGSL FT TYDIGGNFASHLFKGRAYVHCCMPNLDVRDIMRHEGQKDSIELYLSRLDRGNKVVPSFQ FT KEAFDKYAESPQDVVCHNTFQTCEHQQLQNSGRVYAIALHSIYDIPADEFGAALLRKNV FT HTCYAAFHFSESLLLEDSYVNLDEINACFSRDGDKLTFSFASESTLNYSHSYSNILKYV FT CKTYFPASNREVYMKEFLVTRVNTWFCKFSRIDTFLLYKGVAHKSVDSEQFYTAMEDAW FT HYKKTLAMCNSERILLEDSSSVNYWFPKMRDMVIVPLFDISLETSKRTRKEVLVSKDFV FT FTVLNHIRTYQAKALTYSNVLSFVESIRSRVIINGVTARSEWDVDKSLLQSLSMTFFLH FT TKLAVLKDDLMISKFSLGPKTVGQHIWDEISLAFGSAFPSIKERLLNRKLIKVAGDALE FT IRVPDLYVTFHDRLVTEYKASVDMPALDIRKRMEETEVMYNALSELSVLKESDKFDVDV FT FSQMCQNLEVDPMTAAKVIVAVMSNESGLTLTFEQPTEANVALALHDSEKASEGALVVT FT SRDVEEPSMKGSMARGELQLAGLIGDHPESSYTKNEEIESLEQFHMATAESLIRKQMSS FT IVYTGPIKVQQMKNFIDSLVASLSAAVSNLVKILKDTAAIDLETRQKFGVFDVVSRKWL FT IKPTAKSHAWGVVETHARKYHVALLEYNEQGIIACDSWRRVAVSSESVVYSDMAKLKTL FT RKLLHNGEPQVSTARVVLVDGVPGCGKTKEILSRVNFEEDLILVPGKQAAEMIKRRANA FT SGVIVATKDNVRTVDSFMMNYGKVARCQFKRLFIDEGLMLHTGCVNFLVSMSLCDIAYI FT YGDTQQIPYINRVTGFPYPAHFAKLEVDEVETRRTTLRCPADVTHYLNKRYEGFVMSTS FT SVKKSVSQEMVSGAATINPISKPLHGKVLTFTQSDKEALLSRGYSDVHTVHEVQGETYS FT DVSLVRLTPTPVSIISGDSPHVLVALSRHTCSLKYYTVVMDPLVSIIRDLEKLSTYLLD FT MYKVDAGTQ" FT CDS 4906..5709 FT /codon_start=1 FT /transl_table=1 FT /gene="mp" FT /product="30 kDa movement protein" FT /db_xref="GOA:G5EKV1" FT /db_xref="InterPro:IPR001022" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:G5EKV1" FT /protein_id="BAL04985.1" FT /translation="MALVVNGKVNVGEFIDLTKMEKLLPSMFTPVKSVMCSKVDKIMVH FT ENESLSEVNLLKGVKLIENGYVCLAGLVVTGEWNLPDNCRGGVSVCLVDKRMERADEAT FT LASYYTAAAKKRFQFKVVPNYAITAHDAMKNVWQVLVNIRNVRMSAGFCPLSLEFVSVC FT IVYRNNIKLGLREKITTVKDGGPMELTEEVVDEFMEDVPMSVRLAKFRSRTPKKNNGKK FT VKVEGVDRFAPKMNKGKDRNYGGVFERNAFIDNDSEAIDAESDSF" FT CDS 5712..6191 FT /codon_start=1 FT /transl_table=1 FT /gene="cp" FT /product="17.6 kDa coat protein" FT /db_xref="GOA:G5EKV2" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:G5EKV2" FT /protein_id="BAL04986.1" FT /translation="MSYTITTPSQFVYLSSAWADPIELINLCTNALGNQFQTQQARTVV FT QRQFSEAWKPSPQVTVRFPANDFKVYRYNAVLDPLVTALLGAFDTRNRIIEVENQANPT FT TAETLDATRRVDDATVAIRSAINNLVVELIRGTGSYNQRAFESTSGLVWTSGPAT" XX SQ Sequence 6395 BP; 1891 A; 1232 C; 1509 G; 1763 T; 0 other; gtatttttta acaacaatta ccaacaacaa caaacaatta aacaacatta caatcactat 60 ttacaactac aatggcatac acacagacag ctaccacatc tgctttgctc gacactgtcc 120 gaggtaacaa caccttggtc aatgatcttg caaagcgtcg tctatacgac tcagcggtgg 180 aagagttcaa cgctcgagac cgcaggccca aaataaactt ttcaaaagta ataagcgagg 240 aacagacgct tattgctaca agggcatatc cagaattcca aataacattt tacaataccc 300 aaaacgcagt gcattcactt gcaggcgggt tgagatcatt agaattggaa tatctgatga 360 tgcaagttcc gtatggttca ttaacttatg acatcggagg gaattttgca tcgcatctgt 420 tcaaaggacg ggcatacgtg cattgttgca tgcccaatct tgacgtccgc gacatcatgc 480 ggcacgaggg ccagaaggac agcattgaac tatacctttc caggctagac agagggaaca 540 aagtcgttcc gagcttccag aaagaagcct tcgacaaata tgcggaatct ccgcaggatg 600 ttgtctgtca caacactttc caaacttgtg agcatcagca actccagaac tctggcagag 660 tgtacgccat cgcgctacac agtatctacg atattcctgc tgatgaattt ggtgcagcac 720 ttctaaggaa aaatgttcat acatgctacg ctgctttcca cttctctgaa agtcttcttc 780 tagaagattc gtacgtcaac ttggacgaaa tcaacgcgtg tttttcgcgt gatggggaca 840 agttgacctt ttcttttgca tctgagagta ctcttaatta ttcccatagc tactctaata 900 ttctaaagta tgtgtgcaaa acttacttcc cagcctctaa tagagaggtg tacatgaagg 960 agtttttagt taccagggtt aatacctggt tttgtaaatt ttctagaatt gatacttttt 1020 tactatataa aggtgtagcg cacaagagtg tagatagtga gcagttttat actgcaatgg 1080 aggatgcatg gcattacaaa aagacacttg cgatgtgcaa cagcgagaga atccttcttg 1140 aggattcttc ttcagttaac tactggttcc cgaaaatgag ggacatggtc atcgtaccat 1200 tgttcgacat atctcttgaa accagtaaaa gaacccgcaa ggaggtctta gtgtccaaag 1260 attttgtatt tactgttctt aaccacatcc gtacatacca ggccaaagca cttacttact 1320 caaatgtatt atccttcgtc gaatcaattc ggtcgagggt gatcattaat ggagtaacag 1380 cgaggtctga gtgggatgtt gataagtcac ttttacaaag tttatccatg acgttcttct 1440 tgcatacaaa acttgcagtt cttaaagatg atctgatgat cagcaagttc agtctcgggc 1500 ccaaaactgt aggtcaacat atatgggacg agatttcatt ggcttttggc agcgctttcc 1560 cgtcgataaa agaaagactt ttgaacagga aactgatcaa agtggctggc gacgcgttag 1620 agattagggt gcctgatctc tacgtgacct tccacgatag attggtgacc gagtacaaag 1680 cctcggtgga tatgcctgca cttgacataa gaaaaaggat ggaagaaact gaagtgatgt 1740 acaacgctct ttcagaactg tcagttctaa aagagtccga caaattcgat gttgatgttt 1800 tttcccagat gtgccaaaat ttggaggtgg acccaatgac agctgcaaag gttatagtgg 1860 cagtgatgag caatgagagt ggtcttacgc tcacgtttga acaaccaaca gaagcgaacg 1920 tcgcattggc tttgcatgat tcagagaagg cttcagaagg tgcacttgtg gtcacctctc 1980 gtgatgtgga agagccctcc atgaaaggtt cgatggcaag gggtgagtta caattagcag 2040 gtcttatcgg agaccatccg gagtcgtcct atacaaagaa cgaggaaatt gaatcattgg 2100 agcagttcca tatggcaacg gcagagtcgt taattcgcaa acagatgagc tcgattgtgt 2160 acacaggtcc gattaaagtt cagcaaatga aaaactttat cgatagcctg gtagcgtcac 2220 tatctgctgc ggtgtcgaat cttgtcaaga tcttaaagga cacagctgct attgatttgg 2280 aaacccgtca aaagtttgga gtcttcgacg tggtgtcaag gaaatggcta atcaaaccca 2340 ctgctaagag tcacgcatgg ggagtggtag aaactcacgc gaggaaatac catgttgcac 2400 ttttggagta caatgaacaa gggataatcg catgcgattc ttggaggaga gtggccgtta 2460 gttctgaatc agtcgtttat tctgacatgg ccaaacttaa aactttaagg aaattgcttc 2520 acaatggtga accacaagtc agtacagcaa gagtcgtact cgtggacggc gtcccagggt 2580 gtggaaaaac caaggaaatc ctttcaagag tcaactttga agaggatttg atcttagtac 2640 ccgggaagca agctgctgaa atgatcaaga gacgtgcgaa cgcctcagga gttatcgtag 2700 ccacgaagga caatgtaagg accgtagatt cattcatgat gaattacgga aaggttgcac 2760 gctgtcagtt caagaggttg ttcatcgacg aaggtctgat gttgcacact ggttgtgtga 2820 attttctcgt gtctatgtct ttgtgcgata ttgcatatat ttatggagac acgcagcaaa 2880 ttccgtatat caacagagtt acaggtttcc catacccagc ccattttgct aaactggaag 2940 tggacgaagt ggagacgcgc agaactactt tgcgttgtcc tgccgacgtc actcactatt 3000 tgaacaaaag gtatgaaggg tttgtgatga gcacatcttc tgtcaagaaa tcagtatccc 3060 aagagatggt gagtggtgcg gcgaccataa acccaatctc caaaccattg cacggtaagg 3120 tcttaacctt cactcagtcc gacaaggaag ctctgctttc aagagggtac tctgacgtac 3180 atactgtaca tgaggtgcaa ggagagacgt acagtgatgt gtctcttgtg aggttgaccc 3240 ctactcctgt ctcgatcatc tctggtgaca gtcctcatgt tttggttgct ctttcgaggc 3300 atacatgttc actcaagtac tacactgttg tgatggatcc cttagttagt atcattagag 3360 atttagaaaa gcttagcact tacttgttag atatgtacaa agttgatgca ggtacacaat 3420 agcaattaca gatagactcg gtgtttaaag gttctaatct ttttgtagcc gctccgaaga 3480 ctggcgatat ttccgatatg caattttact atgataagtg tctccctggg aatagcacca 3540 tgatgaataa ttatgatgct gtgaccatga ggctgactga catttcattg aatgtcaaag 3600 attgcatatt ggacatgtcc aagtctgttg cagctccaaa ggattcaaac attccactga 3660 taccgatggt acgaacggcc gctgaaatgc cgcgccagac tggactattg gaaaacttgg 3720 tggcgatgat aaaaagaaac tttaatgcac ccgagttgtc tggaattgta gatattgaga 3780 atactgcatc tttggttgta gataggtttt ttgatagtta tttacttaaa gaaaaaagaa 3840 aaccaaataa aaatgtttct ttgttcagta gagagtctct caatagatgg ttagaaaaac 3900 aagagcaagc aactattggc caacttgcag attttgattt tgttgacttg ccggcggttg 3960 atcagtacag gcacatgatc aaagcacaac ctaagcagaa actggacaca tccattcaaa 4020 cggagtatcc tgctctgcaa acgattgtgt accactcaaa aaagatcaac gcaattttcg 4080 gccctttgtt cagtgaatta accagacagt tacttgatag tgtggactca agcagatttt 4140 tgttctttac aagaaaaaca ccggcacaaa tcgaggaatt ctttggagac cttgatagtc 4200 atgtgccaat ggatgttttg gagcttgata tttcaaagta cgataaatct caaaatgagt 4260 ttcattgcgc tgttgagtac gaaatctggc ggagactagg gttcgaagat ttcttgggag 4320 aagtttggaa acaaggtcac aggaagacca ccctcaagga ctataccgca ggaattaaaa 4380 cctgtatatg gtaccagagg aagagcggtg acgtcaccac gttcattggg aacacagtga 4440 tcatcgcagc atgcttagct tcaatgcttc ctatggagaa aataataaaa ggcgcctttt 4500 gcggggatga cagtttgctc tattttccga aaggatgcga gttccctgac gttcagcaag 4560 cggcaaatct tatgtggaat tttgaagcaa aactgttcaa aaagcaatat ggatactttt 4620 gcgggaggta cgtaatacat catgacagag ggtgcattgt ttattacgac cctctaaagt 4680 tgatctccaa gctcggtgct aaacacatca aggattggga tcacttagag gaattcagga 4740 ggtccctttg tgatgttgct gtttcgttga acaattgtgc gtactacacg caattggacg 4800 acgcggtctg ggaggttcat aaaaccgccc cggcaggttc gtttgtttat aaaagtttgg 4860 taaagtatct gtcagataag gttcttttta gaagtttgtt tctagatggc tctagttgtt 4920 aatgggaagg tgaatgttgg tgagtttatt gacttgacga aaatggagaa attgttgccg 4980 tcaatgttca caccagttaa aagtgttatg tgttccaagg ttgataagat aatggtacat 5040 gaaaatgagt cattgtctga agttaaccta ctcaaaggtg tgaagctcat cgaaaatgga 5100 tatgtctgtc tcgcaggctt ggtggttaca ggtgagtgga atttgcccga taattgcaga 5160 ggtggtgtca gcgtatgtct ggtggacaaa agaatggaaa gagcagacga ggccacttta 5220 gcatcttact acaccgctgc tgcaaagaaa aggtttcagt tcaaggttgt cccaaactat 5280 gcaataaccg ctcacgatgc gatgaagaac gtgtggcaag ttctggttaa tattagaaat 5340 gttagaatgt cggcgggttt ctgtccgctt tcgttggagt ttgtgtccgt gtgtattgtt 5400 tatagaaata atataaaatt gggtttgagg gagaaaatca caactgtgaa agatggagga 5460 cccatggaac tcaccgaaga agttgttgat gagttcatgg aagacgttcc aatgtctgtc 5520 agacttgcga agtttcgatc tcgaacccca aaaaagaata atggaaagaa ggttaaagtt 5580 gaaggtgttg atcggtttgc gccgaagatg aataaaggaa aggatagaaa ttatggagga 5640 gtatttgaaa gaaatgcttt tatcgataat gattcggagg ctattgacgc cgaatctgac 5700 tcgttttaag tatgtcgtat acaattacaa ctccttctca gtttgtgtat ttgtcttcag 5760 catgggccga cccaatagag ttaattaatt tatgtactaa tgcgttaggt aatcagtttc 5820 aaacacaaca agcaagaact gtcgtccaac gacagtttag cgaagcgtgg aaaccgtcac 5880 cacaagtcac tgtcaggttt cctgccaatg actttaaggt gtataggtac aatgcggtgc 5940 tagatcctct agtaactgca ctgttaggtg cttttgatac taggaataga ataatagagg 6000 ttgaaaatca ggcgaaccct acaactgctg aaacgttaga tgctactcgg agagtagatg 6060 acgcgacggt ggctataagg agcgctataa ataatttagt agtagaattg atcagaggaa 6120 ctggatcata caatcagaga gctttcgaaa gcacttcagg tttggtctgg acttctggtc 6180 ctgcaacttg agatagtcat gttgcataat aaataacgga ttgtgtccgt aaacacacgt 6240 gatgcgtacg ataacgcata gtgtttttcc ctccacttaa atcgaagggt tgtgtcttgg 6300 ttcgcgcggg tcaaatgtat atggttcata tacatccgta ggcacgtaat aaagcgaggg 6360 gttcaaatcc ccccgttacc cccggtaggg gccca 6395 //