ID AB620105; SV 1; linear; viral cRNA; STD; VRL; 6517 BP. XX AC AB620105; XX DT 25-MAR-2011 (Rel. 108, Created) DT 25-MAR-2011 (Rel. 108, Last updated, Version 1) XX DE Carrizal virus gene for RNA-dependent RNA polymerase, complete cds, DE isolate: 26/2006. XX KW . XX OS Carrizal virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Ellioviricetes; OC Bunyavirales; Hantaviridae; Mammantavirinae; Orthohantavirus; OC unclassified Orthohantavirus; unclassified Hantavirus. XX RN [1] RP 1-6517 RA Kariwa H., Saasa N., Sanchez-Hernandez C., Romero-Almaraz M., Ishizuka M., RA Yoshida H., Sanada T., Seto T., Yoshii K., Takashima I.; RT ; RL Submitted (17-MAR-2011) to the INSDC. RL Contact:Hiroaki Kariwa Hokkaido University, Graduate School of Veterinary RL Medicine; Kita-18, Nishi-9, Kita-Ku, Sapporo, Hokkaido 060-0818, Japan XX RN [2] RA Kariwa H., Saasa N., Sanchez-Hernandez C., Romero-Almaraz M., Yoshida H., RA Almazan-Catalan A., Miyashita D., Ishizuka M., Seto T., Sanada T., RA Ramos C., Yoshimatsu K., Arikawa J., Yoshii K., Takashima I.; RT "Genetic identification and characterization of distinct hantaviruses RT circulating in Mexico"; RL Unpublished. XX DR MD5; 4d1c61dec0a239d2e37fc05b20ba2b38. DR EuropePMC; PMC4136290; 24850747. XX FH Key Location/Qualifiers FH FT source 1..6517 FT /organism="Carrizal virus" FT /segment="L" FT /host="Reithrodontomys sumichrasti" FT /isolate="26/2006" FT /mol_type="viral cRNA" FT /country="Mexico:Guerrero" FT /lat_lon="17.36 N 99.49 W" FT /isolation_source="Lung of Reithrodontomys sumichrasti" FT /collection_date="12-May-2006" FT /db_xref="taxon:1000586" FT CDS 14..6475 FT /codon_start=1 FT /transl_table=1 FT /product="RNA-dependent RNA polymerase" FT /db_xref="GOA:F1T2C7" FT /db_xref="InterPro:IPR007099" FT /db_xref="InterPro:IPR007322" FT /db_xref="InterPro:IPR016268" FT /db_xref="InterPro:IPR024378" FT /db_xref="UniProtKB/TrEMBL:F1T2C7" FT /protein_id="BAK08524.1" FT /translation="MEKYKEIHQKVKEITPGAASALECMDLLDRLYAARHDVVDQMIKH FT DWSDNKDIERPIGQVLLMAGIPNDVIQAMEKKIIPTSPSGQILKSFFRMTPDNYKITGT FT TIEFIEVTVTADVARGIREKRLKYEGGLTFIEELLEHEHKRGILPQPYKITLGVVAVKT FT DGSNISTQWPSRRNDGVVQHMRLIQADINYVREHIIKPDERSSLEAMFNLKFHVGGPKL FT RYFNIPDYRPQSLCHPESQSLLDYCRTWLTEEHSFNFKEVNGASVMECFEENEKLHMSS FT YTVSRKPRNFLLVQGTVQGPYLPSTITSDQCDTRIGCLEILKNAPQTPVQAIALDMAYK FT YMSLTKDEIINYYNPKVHFQTTQNVKEPGTFKLGLSQLNPLSRAVIDQVGKHKSEKGLF FT GNIIESINIGSQIQLNECCRTIEQILSNLEINLGETTNMIPSPRKTTGVDSLLGKFYEN FT ELTKYLLVILRKTAAWHLGHMLRDITESLIAHAGIKRSKYWSIHAYDHGGVVLFILPSK FT SLEVVGSYIRFFTVFKDGIGLIDPDNLDSKVDIDDVTWCFSKVMSLDLNRLLALNIAFE FT KALLATATWFQYYTEDQGHFPLQHALRSVFSFHFLLCVSQKMKLCAIFDNLRYLIPSVT FT SLYSGFSLLIEKFFERPFKSAFDVYLYSIIRALLISLAQSNKVRFYSKVRLLGLTVDQS FT TVGASGVYPSLMSRVVYKHYKSLISEATTCFFLFEKGLHGNLNEEAKIHLETVEWARKF FT QEKEELYGDILMREGYNIDAIKNGSVKVEQQIFCQEVVELAAQELNKYLQAKSQILCSN FT IMNKHWDKPYFSQTRNISLKGMSGALQEDGHLAASVTLIEAIRFLNRSQTNPNVIEMYE FT QTKQHKAQARIVRKYQRTEADRGFFITTLPTRVRLEIIEDYFDAIAKVVPEEYISYGGD FT RKILNIQLALEKALRWASGHSEIKTSTGNIIRFKRKLMYVSADATKWSPGDNSAKFKRF FT TQALHDGLSDQKLKCCVVDALRHIYETEFFMSRKLHRYIDNMESYSEAVKDFLDFFNGG FT VSANIKGNWLQGNLNKCSSLFGAALSLLFKQVWGELFPELECFFEFAHHSDDALFIYGY FT LEPEDDGTEWFLYVSQQIQAGQYHWYAVNQDMWKSMFNLHEHILLMGSIKISPKKTTVS FT PTNAEFLSTFFEGCAVSIPFIKILLGSLSDLPGLGFFDDLAAAQSRCVKALDLGASPQL FT AQLAIVICTSKVERLYGTAEGMVNNPTAFLKVNKQSIPIPLGGDGSMSIMELATAGIGM FT ADKNILKNAYYSYKHTRRESDRYILGLFKFLMSLSEDIFQHDRLGEFSFVGKVQWKVFT FT PKSEFEFYDQFSHTYLKAWTQQHPVYDYIIPRNRDNLLVYLVRKLNDPSIVTAMTMQSP FT LQLRFRMQAKQHMRVCRLEGEWVTFREVLAAADSYATQYNPTENDMDLFQTLVNCTFSK FT EYAWKDFLNEVKCEVITAKHIHRAKVARTFTVREKDQAIQNPITAVIGYKYATTVDEIS FT DVLDSSIFPDSLSADLQVMKDGVYRELGLDIGLPEVLKRIAPLLYKAGRSRVVIVEGNV FT EGTAESICSYWLRSLSLVKTIKVKPRKEVLKAVSLFNRKENIGLQDDLAATRLCIEVWR FT WCKANEQDVRDWLNALYFENQTLMDWVERFRRKGVVSVDPEIQCIGLLLYDVLGYKSVL FT QMQANRRAYSGKQYDAYCVQTYNEETKLYEGDLRVTFNFGLDCARLEIFWDKKEYILET FT SITQRHVLKLMMEEVTKELLRCGMRFKTEQVNCARSLVLFKTEAGFEWGKPNIPCIVFK FT HCVLRTGLRTKQPINKEFIISVQAEGFRAIAQMDIESPRFLLAHAYHTLRDVRYQALQA FT VGNVWFKTSQHKLFLNPIISSGLIENFMKGIPAAIPPAAYSLIMNKAKISVDLFMFNEL FT LALINNQNILNLDGIEETSEGYSTVTSMSSRQWSEEMSIVADDDIDDPDEYTIDLDDVD FT FEQVNLDDDIEHFLQDESAYVGDLLIQTEDTEVKKIRGVTKILEPVKLIKSWVSKGLAI FT DKVYNPIGIILMARHMSKMYNFHKIPLALLNPYDLTEFESVVKGWGETVNDRFKEYDIE FT AQRLVSEKHILPEDILPDSLFSYRHVDVLLKRLFPMDPISTFY" XX SQ Sequence 6517 BP; 2202 A; 957 C; 1351 G; 2007 T; 0 other; gagatctacg acaatggaaa aatataagga aatacatcaa aaagtaaagg agattactcc 60 aggggcagca tcagcattgg agtgcatgga tttacttgat agattgtatg ctgcaaggca 120 tgatgtggtg gatcagatga taaaacatga ttggtctgat aataaagata ttgaaagacc 180 tataggtcaa gtcctgttaa tggcaggtat cccaaatgat gtgatacaag ccatggagaa 240 aaagataata cccacgagtc caagtgggca gatcttaaaa agttttttta gaatgacacc 300 tgataactat aagataactg ggacaacaat tgaattcatt gaggtaaccg ttactgcaga 360 tgttgcaaga ggaattcgag aaaaaaggtt aaaatatgaa gggggtttaa catttattga 420 agaactacta gaacatgaac ataaaagagg tattctacct caaccctata aaatcacctt 480 gggtgtagtg gcagtgaaaa cagacggctc aaatatatcc acccaatggc caagtcgaag 540 gaatgatggt gttgtgcaac atatgagact tatccaggct gatattaatt atgtgcgtga 600 acatataatt aaaccagatg aaagatcatc cttagaagct atgttcaact taaagttcca 660 tgttggaggg ccaaagctta gatactttaa tatacctgat tatagacctc aatcattatg 720 tcacccagaa tcacaatcct tattagatta ttgtagaact tggctaacag aggagcatag 780 ttttaacttt aaagaggtca atggggcaag tgtgatggaa tgctttgaag aaaatgaaaa 840 attacatatg tcatcatata ctgtatctcg caaaccccgg aattttttat tagttcaagg 900 tactgtacag ggtccatatc taccatcaac gattacatct gaccagtgtg ataccaggat 960 aggttgtcta gagatattaa agaatgcacc tcaaactcct gtccaagcaa tagcccttga 1020 tatggcttat aagtatatga gcttgacaaa agatgaaatc attaattatt ataatcctaa 1080 agtgcatttt caaacaacac aaaatgtgaa ggagcctgga acatttaagt taggtctatc 1140 acaattgaat ccgctgtcac gggcagtaat agatcaggta ggtaagcata agtctgaaaa 1200 gggcttattt ggaaatatta tagaaagtat taatattggt agtcagatac aattaaatga 1260 atgctgtaga acaatagagc agatactgtc aaacctagag ataaatttag gtgaaacaac 1320 caatatgatc ccatcaccca ggaaaacaac tggagtagat tctctccttg gtaagtttta 1380 tgaaaatgaa ttaacgaagt atcttctggt tattctaaga aaaactgcag cttggcattt 1440 aggccatatg ctcagggata taacagaaag tttaatagct catgcaggta ttaagagatc 1500 aaaatattgg tcaatacatg catatgatca tggaggagta gttctgttta ttctaccttc 1560 aaagtcgctg gaagtggtcg ggtcttatat aagatttttc acagtattta aagatggtat 1620 aggattaata gaccctgaca atctagactc aaaagtagat atagatgatg ttacgtggtg 1680 tttttcaaaa gtcatgagct tagatttaaa tagattactt gcattaaata ttgcttttga 1740 aaaggcatta ctggctactg caacatggtt ccaatattac acagaagatc aggggcactt 1800 tccattgcaa catgcattga gatcagtgtt ctctttccat tttttattat gcgtatctca 1860 aaaaatgaaa ctctgtgcca tttttgataa tttacgctat ttaatacctt cagtgacatc 1920 cttatattca ggtttttctc tattgattga gaaattcttt gaaagaccat ttaaaagtgc 1980 atttgatgtt tacttatata gtataattag agcattatta attagtttag ctcaaagcaa 2040 caaagtgaga ttttattcta aggtacgatt attggggtta acagttgatc aatccactgt 2100 aggtgcaagt ggtgtatacc cttctttaat gtctcgagta gtttataagc attataaaag 2160 tctgatatct gaggctacaa cttgtttttt tctatttgag aaggggctac atggtaatct 2220 taatgaagaa gctaaaatac atcttgagac agttgagtgg gcaagaaaat ttcaggaaaa 2280 ggaagagcta tatggagata ttcttatgag agaaggttat aatattgatg caattaagaa 2340 tggtagtgta aaggtcgaac aacaaatctt ctgtcaagag gtagttgagc tagccgcaca 2400 ggaattgaat aaatatttac aagcaaaatc tcaaatatta tgttcaaata ttatgaataa 2460 acactgggat aagccttatt ttagtcaaac tagaaatata agtttgaagg ggatgtcagg 2520 tgcacttcaa gaagatggtc atttagctgc cagtgttacc ctaattgagg caattaggtt 2580 tttaaataga tcacaaacaa accctaatgt tattgagatg tatgaacaaa ctaaacaaca 2640 taaagctcaa gcaagaattg taagaaaata tcaaaggact gaagcagatc gtggtttctt 2700 tattacaacc cttccaacac gtgttaggtt agaaattatt gaagattatt ttgacgcaat 2760 tgcaaaagtt gtaccggaag agtatatttc ttatggtggg gatcgtaaga ttttaaatat 2820 tcagttggca ttagagaagg ctttgagatg ggcttctggt cattcagaaa taaaaacaag 2880 cacagggaac ataatacgat ttaaaagaaa gctcatgtat gttagtgctg atgcaactaa 2940 atggtcccct ggtgataatt cagcaaagtt taagcgtttt acacaagctt tacatgatgg 3000 attgtcagat caaaagttaa aatgttgtgt tgtagatgca ttacgacata tttatgaaac 3060 tgaatttttt atgtcccgta aactacatag atatatagat aatatggaga gttattctga 3120 agctgtgaaa gatttcttag atttttttaa cgggggagta tcagctaaca ttaaaggcaa 3180 ctggcttcaa ggtaacttaa acaaatgttc ttcattgttt ggagcagcct tgtcattact 3240 atttaaacaa gtatggggtg agttatttcc tgaacttgag tgtttcttcg aatttgctca 3300 ccattctgat gatgctttat tcatatatgg ttatctagaa cctgaggatg atggaacaga 3360 atggtttttg tatgtgtctc agcaaataca agctggacaa tatcattggt atgctgtaaa 3420 ccaggatatg tggaaaagta tgtttaacct tcatgagcac atattgttga tgggttcaat 3480 aaagatttca ccaaaaaaga caacagtgtc acctacaaat gcagagtttt tgtcaacatt 3540 ctttgaaggt tgtgctgtat ccattccatt tattaaaata ttattaggtt ctttgtcaga 3600 cttacctggc ttaggttttt ttgatgattt agcagcagca caaagccgat gtgtaaaggc 3660 tttagattta ggggcaagcc cgcaacttgc tcaacttgca attgtaattt gtactagtaa 3720 ggttgagcga ttgtatggta ctgctgaagg tatggttaat aaccccactg cctttcttaa 3780 agtgaataag caatcaatac cgataccgtt aggtggtgat ggttctatgt ctataatgga 3840 gttggccact gctggcattg ggatggctga taaaaatatt ctcaaaaatg catattattc 3900 ctataaacac acacgaaggg aatctgacag atatatttta ggtttattta agtttttaat 3960 gtcattgagt gaagatattt ttcaacatga taggttagga gagtttagct ttgttggaaa 4020 ggttcaatgg aaggtattta cacccaaatc tgagtttgag ttttatgatc agttctctca 4080 cacatatcta aaggcctgga cacagcaaca tccggtttat gattatataa tacctaggaa 4140 tcgtgacaac ttacttgtat atcttgttcg gaagttgaat gaccctagca tagtaacagc 4200 aatgactatg caatctccac ttcaattaag atttagaatg caggcaaagc agcatatgag 4260 agtttgtaga ttggaaggtg agtgggtcac atttagagaa gtattagccg cagcagatag 4320 ttatgcaaca caatacaacc ctacagagaa tgatatggat ttgttccaaa cattagtaaa 4380 ttgtacattc tcaaaagaat atgcatggaa agacttcttg aatgaggtta agtgcgaagt 4440 aattactgct aaacatatac accgtgctaa agtcgcaagg acatttactg taagggagaa 4500 agatcaagct atacaaaacc ctatcacagc agtgattggg tataaatatg ccacaactgt 4560 cgatgaaata agtgatgttt tggacagttc aatatttcct gactcccttt cagctgattt 4620 acaagtaatg aaagatgggg tatacagaga actaggttta gacataggtt tacctgaggt 4680 tttaaaacgt atagcaccat tattgtacaa agctgggcgt tcaagagttg ttatagttga 4740 aggtaacgtg gagggaactg cagaatcaat ttgtagttac tggcttcgaa gtttatcact 4800 tgtaaagaca attaaggtaa aaccacgtaa agaagtatta aaagctgtat cattatttaa 4860 tcgtaaagag aatattggat tgcaggacga tttagctgca acaagattgt gtattgaggt 4920 atggaggtgg tgcaaagcaa atgagcagga tgtaagagat tggcttaatg cactctattt 4980 tgaaaaccaa accttgatgg attgggttga gaggtttcgg agaaaaggtg tagtctctgt 5040 agatccagag attcaatgca ttggattatt actgtatgat gttctgggat ataagagtgt 5100 gcttcaaatg caagccaacc gacgagctta ttctgggaaa caatatgatg cctattgtgt 5160 tcaaacatat aatgaggaga caaaattgta tgaaggtgat ttgcgagtta cattcaattt 5220 tggattagac tgtgctcgct tagaaatatt ctgggataag aaagaatata tacttgagac 5280 atcaatcact caaaggcacg tattgaagtt aatgatggag gaggtgacca aggaattgct 5340 aagatgtgga atgcgattta aaacagaaca agttaattgt gcaagaagtc ttgttttgtt 5400 taagactgaa gctgggtttg agtggggtaa accaaacatt ccatgtatag tgtttaagca 5460 ttgtgtattg agaacagggt taagaacaaa acaacccatt aataaagaat ttatcattag 5520 tgttcaggct gaaggtttca gagctatagc acagatggat atagaaagtc cacgattttt 5580 actagctcat gcatatcata cattacgtga tgtcagatat caagcattgc aggcagttgg 5640 caatgtttgg tttaagactt ctcaacataa attgtttctt aaccctatca tatcctccgg 5700 actcattgag aatttcatga aagggatacc tgcagcaatc ccaccagctg cgtattcatt 5760 aataatgaat aaagctaaaa tttctgtaga tttgttcatg ttcaatgagc tattagcact 5820 gattaataat caaaacattc taaatctaga tgggattgag gagacatcag aaggttatag 5880 tactgttact tcaatgtcta gtaggcaatg gtcagaggaa atgagcattg ttgcagatga 5940 tgatattgat gacccagatg agtacacaat agaccttgat gatgtggact ttgagcaagt 6000 taatctagat gatgatattg agcactttct tcaagatgag tcagcatatg ttggggatct 6060 cttaatacag actgaagaca cagaagtaaa gaagattaga ggtgtgacta agatactgga 6120 accagtgaaa ttaattaaaa gttgggtatc taaaggatta gccattgata aagtgtataa 6180 ccctatagga attatactta tggcacggca tatgtctaag atgtataatt tccataaaat 6240 tcctttggca cttttgaacc cttatgactt aacagaattt gaaagtgtgg taaaagggtg 6300 gggagaaact gttaatgata ggtttaaaga atatgatatc gaagcacaaa gacttgttag 6360 tgaaaagcat attcttcctg aagatatatt accagattca ttattttcct ataggcatgt 6420 tgatgtgctc cttaaacgtc tttttccgat ggatccaata tctactttct attgattgtt 6480 tttttacttc atttaatacc acatgttttt tctaatg 6517 //