ID AB600873; SV 1; linear; genomic RNA; STD; VRL; 2940 BP. XX AC AB600873; XX DT 18-NOV-2010 (Rel. 106, Created) DT 19-FEB-2015 (Rel. 123, Last updated, Version 3) XX DE Chrysanthemum stem necrosis virus S RNA segment, complete sequence, DE isolate: HiCh06A L1. XX KW . XX OS Chrysanthemum stem necrosis virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Ellioviricetes; OC Bunyavirales; Tospoviridae; Orthotospovirus; OC Chrysanthemum stem necrosis orthotospovirus. XX RN [1] RP 1-2940 RA Nagai N., Okuda M., Matsuura S., Okuda S., Furuya N., Tsuchiya K., RA Takeshita M.; RT ; RL Submitted (15-NOV-2010) to the INSDC. RL Contact:Minoru Takeshita Kyushu University, Laboratory of Plant Pathology; RL 6-10-1 Hakozaki Higashi-ku, Fukuoka, Fukuoka 812-8581, Japan XX RN [2] RA Takeshita M., Nagai N., Okuda M., Matsuura S., Okuda S., Furuya N., RA Tsuchiya K.; RT "Molecular and biological characterization of Chrysanthemum stem necrosis RT virus isolates from distinct regions in Japan"; RL Eur. J. Plant Pathol. 131:9-14(2011). XX DR MD5; b585fab1fd150f53063b57bca0cd7c91. DR EuropePMC; PMC3371012; 22715400. XX FH Key Location/Qualifiers FH FT source 1..2940 FT /organism="Chrysanthemum stem necrosis virus" FT /segment="S RNA" FT /isolate="HiCh06A L1" FT /mol_type="genomic RNA" FT /country="Japan:Hiroshima" FT /collection_date="2006" FT /db_xref="taxon:83871" FT CDS 80..1474 FT /codon_start=1 FT /transl_table=1 FT /gene="NSs" FT /product="non-structural protein" FT /db_xref="InterPro:IPR004915" FT /db_xref="UniProtKB/TrEMBL:E3WH94" FT /protein_id="BAJ33511.1" FT /translation="MSLSVYDSIIQTKASVWGSTASGKSVVDSYWIHELETGSSLVQTQ FT LYSDSRSKSSFSYTTRVGDLPCEEKEIFSQHVYIPVFDDIDFNISIDDSFLVMSVCSNT FT VNTNGVKHQGHLKVLSPAQLYSIGSIMSISDITDRFQLQEKDIIPNDRYIEAANKGSLS FT CVKESTYEVKMCHNQALGKVNVLSPNRNVHEWLYSFKPNFNQVESNNRTVNSLAVKSLL FT LSAETTSCQTLKLCKASLILISSDPLVKIPKVLKQFLAKTILNAGDETNKEFYLSIACI FT PNHNSVETALNITVICKHQLPIPKIKAPFELSMMFSDLKEPYNIVHDPSYPQRIVHGLL FT ETHISFAQTLSNNLQEDVIIYSLNNHELTPAKLDLGDRTLNYSEDAYKRKYFLSKTLDC FT LPVNTQTMSYLDSIQIPSWKVDFARGEIKISPQSISVAKSLLALDLSGIGKKKSKAPAG FT SQPEPK" FT CDS complement(2006..2788) FT /codon_start=1 FT /transl_table=1 FT /gene="N" FT /product="nucleocapsid protein" FT /db_xref="GOA:B7XAJ7" FT /db_xref="InterPro:IPR002517" FT /db_xref="UniProtKB/TrEMBL:B7XAJ7" FT /protein_id="BAJ33512.1" FT /translation="MSKVKLTKENIVALLTQAGEVEFEEEQSQIAFNFQSFCNDNLDQI FT KNMNLISCLTFLKNRQSIMKVVKQSDFTFGKITIKKNSDRIGPNDMTFRRLDSLIRVKL FT IGRTKSDEDLNTIKSKIASHPLVQAYGLSLNDAKSVRLAIMLGGSLPLIASVESFEMIS FT VVLAIYQDSKHKELGIDEKKYDTKEALGKVCTVLKSKGFAIDEQQMEKGKEYANILKAC FT DPRMKGAIALDHYSDSLNKFYEMFGVQKGSKLVPKDLV" XX SQ Sequence 2940 BP; 913 A; 530 C; 450 G; 1047 T; 0 other; agagcaatcg agtcatattt tattcttaat caaacctcac tcagaaaatc atcacatcat 60 aataagaaca atagccacaa tgtctttaag tgtttatgat tcgatcattc agacgaaagc 120 ttcagtttgg ggatcaaccg catctggcaa gtctgttgtg gattcttatt ggattcatga 180 acttgaaact ggctcttcac tagttcagac acagctgtac tctgattcta gaagcaaaag 240 cagcttcagc tacaccacaa gagttggaga tcttccttgt gaagaaaaag aaattttttc 300 tcaacatgtt tatatccctg tttttgatga tattgatttt aatatcagta ttgatgattc 360 attcttggtc atgtctgtct gctctaatac agtcaatact aatggagtga aacatcaagg 420 ccatctgaaa gtgctctctc cagctcagct ttactctatt ggctctataa tgagcatatc 480 tgatatcaca gatagattcc agctccagga gaaagatatt atacctaatg acagatatat 540 agaggctgct aacaaagggt ctctttcttg tgtcaaagag agcacttatg aagttaaaat 600 gtgccacaat caagctttgg ggaaagttaa tgtactatct cctaacagaa atgttcatga 660 atggttgtat agcttcaagc cgaatttcaa ccaagttgag agcaacaata ggactgttaa 720 ttctcttgca gttaagtcac ttcttttatc tgctgaaaca acatcatgcc aaactctcaa 780 gctttgtaaa gcttcactga ttctcatttc aagtgaccct ttggttaaga tccctaaagt 840 tttaaagcaa tttcttgcaa aaactatttt aaatgctggg gatgaaacaa acaaggagtt 900 ttatctttct attgcttgca tacctaacca taacagtgtt gaaacagctt tgaatatcac 960 tgtcatttgc aagcatcagc ttccgatccc aaagataaaa gctccttttg agctttcaat 1020 gatgttctct gatctaaaag aaccttataa cattgtccat gatccttcat accctcaaag 1080 aattgttcat ggtttgcttg aaactcatat atcttttgct cagactttga gcaacaacct 1140 tcaagaagat gtgattattt actctttgaa caatcatgaa ttaactcctg ctaagcttga 1200 tttaggggat agaaccttaa attacagtga agatgcttat aaaaggaaat actttctttc 1260 taaaactctg gattgcttac cagttaacac acagactatg tcttatctgg atagcattca 1320 gattccttca tggaaagtgg attttgctag aggagagatt aaaatctctc cacagagcat 1380 ttctgtagca aaatctctac ttgctttaga tttaagtgga attggtaaga agaaatctaa 1440 agctcctgct ggttctcagc ctgaaccaaa atagctcttt atttagctat tatctagttt 1500 taaatttctt tgcttatttt agtttttgca atttgcttac tagtttgata ataagtagaa 1560 tagaatgtat tcagatcatg ttaaatttaa gaaaaccaaa taaaaaatag aaaatcaaaa 1620 aacaaataaa aaataaaaaa tcaaaaaacc aaaaaagatc ccgaaaggga cgattttggc 1680 cagtttggtt ttgtttttgt ttttttgttt ttagtttttc tcttttttat tttgttttat 1740 attgtttttt gtttttatat tatcttattt tattttattt atttcttttt atttttattt 1800 tatttatttt atttgttttt attttattta gttgaaaaca acaaacacaa acactaagtt 1860 aacacacttt aagcacactt ttaaatcttt aactaataac aaacataaat attactttaa 1920 cacactttaa acacacttta aatctttaac acacctttaa caaactttag acttatatat 1980 atataagcta ttttaatagt ttgctttaaa caagatcttt aggaacaagt ttagatccct 2040 tttgaactcc aaacatctca tagaacttgt tgagagaatc actgtaatga tccaaagcaa 2100 tagctccttt cattcttggg tcacaagcct tgagaatatt tgcatattct tttccttttt 2160 ccatctgttg ttcgtcaata gcaaatcctt tgctctttaa aacagtgcaa actttcccta 2220 aagcttcttt agtatcatat ttcttttcat ctattccaag ctctttgtgc tttgaatcct 2280 ggtagatagc tagtacaacg ctaatcatct cgaagctctc aactgaagca atgagaggga 2340 gactacctcc aagcattata gccaatctaa cagactttgc atcattcaag ctaagcccgt 2400 aagcctgaac tagagggtga gaagcaatct ttgatttgat agtgtttaga tcttcatcac 2460 tcttagttct tccaataagc ttgactctta tcaagctatc caatctcctg aaagtcatgt 2520 catttggtcc aatcctatca gagttctttt tgatagtgat tttgccaaaa gtgaaatcac 2580 tttgttttac aaccttcatt atgctttgac gattcttaag aaatgtcaag catgatatta 2640 agttcatgtt tttgatctga tccaggttat cattgcagaa gctttggaag ttgaatgcaa 2700 tttggctctg ttcttcctca aattcaactt ctccagcttg cgtcagcaaa gcaacaatgt 2760 tttcctttgt aagcttaact ttagacatga tgattaaata gagtttagtt tgctttcaac 2820 gaatttggtt tagggtttac aagtcgtgca gagtattccg cagtcgctct ttgtttgtcc 2880 taatgtgata tatatcttac tgagtgctga ggttttgaat aaaattgaca caattgctcc 2940 //