ID AB594828; SV 1; linear; genomic RNA; STD; VRL; 6244 BP. XX AC AB594828; XX DT 03-FEB-2011 (Rel. 107, Created) DT 02-JUL-2013 (Rel. 117, Last updated, Version 3) XX DE Pepper vein yellows virus genomic RNA, complete genome. XX KW . XX OS Pepper vein yellows virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-6244 RA Murakami R., Nakashima N.; RT ; RL Submitted (18-OCT-2010) to the INSDC. RL Contact:Ritsuko Murakami National Institute of Agrobiological Sciences, RL Insect Genetics and Evolution Department; Ohwashi 1-2, Tsukuba, Ibaraki RL 305-8634, Japan XX RN [2] RC DOI:10.1007/s00705-011-0956-5 RX DOI; 10.1007/s00705-011-0956-5. RX PUBMED; 21400195. RA Murakami R., Nakashima N., Hinomoto N., Kawano S., Toyosato T.; RT "The genome sequence of pepper vein yellows virus (family Luteoviridae, RT genus Polerovirus)"; RL Arch. Virol. 156(5):921-923(2011). XX RN [3] RA Yonaha T., Toyosato T., Kawano S., Osaki T.; RT "Pepper vein yellows virus, a nobel luteovirus from bell pepper plants in RT Japan"; RL Nippon Shokubutsu Byori Gakkaiho 61:178-184(1995). XX DR MD5; 6cab71bac07af9f66b0ee68dfa14a3cd. DR EuropePMC; PMC3081434; 21400195. DR EuropePMC; PMC3728342; 23936244. DR EuropePMC; PMC3784903; 24426276. DR EuropePMC; PMC4422679; 25946037. DR EuropePMC; PMC4882956; 27231375. XX FH Key Location/Qualifiers FH FT source 1..6244 FT /organism="Pepper vein yellows virus" FT /host="Capsicum annuum L. Var. grossum Sendt." FT /mol_type="genomic RNA" FT /country="Japan:Okinawa" FT /isolation_source="leaves of bell pepper" FT /collection_date="Jan-2009" FT /db_xref="taxon:909827" FT CDS 52..801 FT /codon_start=1 FT /transl_table=1 FT /gene="ORF0" FT /product="putative P0 protein" FT /db_xref="GOA:E7FL70" FT /db_xref="InterPro:IPR006755" FT /db_xref="UniProtKB/TrEMBL:E7FL70" FT /protein_id="BAJ72194.1" FT /translation="MNFELINGSHLKVSLTRKLGYRERILNLAVFLSQFLITVQENATT FT SHFLRSICALLPFLLSSKCPFISGNTPHRNAKREQKRVSRLAIYCGVNVTPCCRGKVSS FT STWLQTDDNLGAPRAHLKRCAGSAMASYIQRFQTPLFQGAEGFSRFLRVWTHHCESVVE FT GSISKLPVDRDLIVELWHLGHCLLDLLSSDDIYHARRLSRVAFRLHRIYGDGIAMDVYR FT LAHLPRFIGFKNGEDYLHGSQIQKELQ" FT CDS join(176..1621,1621..3432) FT /codon_start=1 FT /transl_table=1 FT /ribosomal_slippage FT /gene="ORF1-ORF2" FT /product="putative P1-P2 fusion protein" FT /db_xref="GOA:E7FL71" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:E7FL71" FT /protein_id="BAJ72195.1" FT /translation="MQPQVIFFALFVLSSLSFSAANVPLFQGIPRTGTPSGNKSEFQGL FT PFTVGSMSLPVVEERFLPPPGSKPMTISEPHEPTSRDALDLLWQVISRDSRRLFSKAQK FT DFQDSCAYGLTTVKAWLRGAFQSFLWTVISLWSFGIWVIVSWTFYLVTTFTMPVVCLAL FT LFACTEFMVMALRWMFTGWPTCLASLVLKTGKTIFTVPRFRRNYSEEKQVKGFISLKIP FT QSPPRGSVLLVQHEDNSHAGYASCVRLYDGTLALMTCHHVGTGVPGGKVTSTKTPNKIP FT LRLFTPLISSEKGDFMLMSGPPNWESLLGCKGAHFVSASQLAKSKMRFFFIEKDEWMAD FT HGEIVGPRDHWFATTLCNSEPGHSGTPIFNGKTIVGVHAGGENGQNFNVMATIPPVPGL FT TTPRYVFETTAPQGRVFTDEDLSEMMKSVTSYPQLEKFKSHTGKNWADDEDFETEVKSK FT PAPAPVAQEAKPMSSAEEAPPVSKIPAVVPTFSRVGKRERQSCLPNQQQSCPRTREGQG FT EEGRGRKGPRIAHPLKASRISRRRRKIFREAFGEASGENRPCHYREESGGSGGSESHEE FT APGKPAAQTTAENFQRYFEGSYKWEVPASPQEIPGFQRCGSLPQYYHPKQIKSSDWGTQ FT LIQEHLELGEKVSGFGWPTVGPKAEVTSLTLQAERWLQRAQSAKTPSSEDRERVINKTV FT EASSNVKTFGPTATRGNKLEWRQFLEDFKSAVLSLELDAGIGVPYIAYGRPTHKGWVED FT PKLLPVLARLTFNRLQKMLEVESSDMSAEELVQAGLCDPIRTFVKREPHKQSKLDEGRY FT RLIMSVSLVDQLVARVLFQNQNKREIALWRANPSKPGFGLSTDEQVLEFVQALAAQVEV FT SPEEMITSWEKYLVPTDCSGFDWSVAEWMLHDDMVVRNKLTLDLNPTTEKLRSAWLKCI FT CNSVLCLSDGTLLAQRVPGVQKSGSYNTSSSNSRIRVMAAYHCGADWAMAMGDDALESV FT NTNLEVYKSLGFKVEVSGQLEFCSHIFRAPDLALPVNERKMLYKLIFGYNPGSGNLEVV FT ANYIAACVSVLNELRHDPDLVALLHSWLVSPVLPQNN" FT CDS 176..2140 FT /codon_start=1 FT /transl_table=1 FT /gene="ORF1" FT /product="putative P1 protein" FT /db_xref="GOA:E7FL72" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:E7FL72" FT /protein_id="BAJ72196.1" FT /translation="MQPQVIFFALFVLSSLSFSAANVPLFQGIPRTGTPSGNKSEFQGL FT PFTVGSMSLPVVEERFLPPPGSKPMTISEPHEPTSRDALDLLWQVISRDSRRLFSKAQK FT DFQDSCAYGLTTVKAWLRGAFQSFLWTVISLWSFGIWVIVSWTFYLVTTFTMPVVCLAL FT LFACTEFMVMALRWMFTGWPTCLASLVLKTGKTIFTVPRFRRNYSEEKQVKGFISLKIP FT QSPPRGSVLLVQHEDNSHAGYASCVRLYDGTLALMTCHHVGTGVPGGKVTSTKTPNKIP FT LRLFTPLISSEKGDFMLMSGPPNWESLLGCKGAHFVSASQLAKSKMRFFFIEKDEWMAD FT HGEIVGPRDHWFATTLCNSEPGHSGTPIFNGKTIVGVHAGGENGQNFNVMATIPPVPGL FT TTPRYVFETTAPQGRVFTDEDLSEMMKSVTSYPQLEKFKSHTGKNWADDEDFETEVKSK FT PAPAPVAQEAKPMSSAEEAPPVSKSRQWYPRFPESGNEKGRAACQTNSNPAPAQEKGKE FT KKVEAEKAPASPTPSKLPESADGGEKYLEKLLEKLVERIDLATIEKKVVEVVAQKAMKK FT PQGSQRRRRPRRTSNDTSKEATNGRYQPPHKRSQGSNDAEASPSTTTRSKSKVVTGAPS FT SSKSTWSWERKSPASAGQQ" FT CDS 3632..5842 FT /codon_start=1 FT /transl_table=1 FT /transl_except=(pos:4250..4252,aa:OTHER) FT /gene="ORF3-ORF5" FT /product="putative read through protein P5" FT /db_xref="GOA:E7FL73" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:E7FL73" FT /protein_id="BAJ72197.1" FT /translation="MNTGGVRRNNNGNGGSRNTRRRRRPRQVRPVVVVAPPGRTRRGNR FT RRRNGGRNRRSRNRVGGRSSNSETFIFNKDSIKDSSSGSVTFGPSLSESVALSGGVLKA FT YHEYKITMVNIRFVSESSSTAEGSIAYELDPHCKLTSLQSTLRKFPVTKGGQATFRASQ FT INGVEWHDTSEDQFRLLYRGNGTKNVAAGFFQIRFTVQLHNPKXVEGSTPPPPPPSGPE FT PPPPPPQPEPCKKNRFWGYEGNPQSKILTAENDRNIDSRPLNFVSMYKWEDEKWDKVNL FT QAGYSRNDRRCMETYLTIPADKGKFHVYLEADGEFVVKHIGGDLDGSWLGNIAYDVSQR FT GWTVGNYKGCKIKNYQTNITFVAGHPEAKMNGKAFDSARAVEVDWFASFELECDDEEGS FT WMIYPPPIQKDSSYNYTVSYGNYTEKYCEWGAISVSIDEDNEGYAPRRIPRKGEMAWSY FT PEKDYSENKPQKENWDTEPLDTGEMQRERQLVKTPSPDVSDSGSEFGADPIPQDLIDKV FT NRGEALDPMQQLEYDKYRFQENVIELSESQDQSSEYPKLPPPVPHKPLPLGRTEKFFRP FT RADLLEAWDKDHFDPGYTKEEVAAATIISHGSITDGRAAIEERDNKIQRARVSWPHDKS FT TTSPSIAKLREETSEKKALFGGSLRRGSEAASSLGGGSITGGTLKSKRTVEEGIVPKLT FT TTQRLRYEQLKARSQTAANEYLWSVEIPPEKPPGPSTFKGRS" FT CDS 3632..4252 FT /codon_start=1 FT /transl_table=1 FT /gene="ORF3" FT /product="putative P3 protein" FT /db_xref="GOA:E7FL74" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:E7FL74" FT /protein_id="BAJ72198.1" FT /translation="MNTGGVRRNNNGNGGSRNTRRRRRPRQVRPVVVVAPPGRTRRGNR FT RRRNGGRNRRSRNRVGGRSSNSETFIFNKDSIKDSSSGSVTFGPSLSESVALSGGVLKA FT YHEYKITMVNIRFVSESSSTAEGSIAYELDPHCKLTSLQSTLRKFPVTKGGQATFRASQ FT INGVEWHDTSEDQFRLLYRGNGTKNVAAGFFQIRFTVQLHNPK" FT CDS 3663..4133 FT /codon_start=1 FT /transl_table=1 FT /gene="ORF4" FT /product="putative P4 protein" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:E7FL69" FT /protein_id="BAJ72199.1" FT /translation="MEMVDHVTPAVVDAHDRFALSLWSHPLGAHGEEIEDDEMEAGTEE FT AEIELEEGRATAKLSSSTRTQSRIVPQDLSPSGRLYQRASRFQVEFSKPTMNIRSQWST FT YASSVNLLPQRRAPSLTSWTPTASLLVSNPPCVSSPSPKAGKRLFGLRRLTG" XX SQ Sequence 6244 BP; 1731 A; 1537 C; 1551 G; 1425 T; 0 other; acaaaatata cgaagagaga gagcccttgc ttgtgatttc ttcaaagttt catgaacttt 60 gaattgatca acggaagcca tctcaaagtt tccctcactc gcaagctcgg ttacagagaa 120 agaattttga atttagcagt attcttaagt caatttctca taaccgttca agaaaatgca 180 accacaagtc attttcttcg ctctatttgt gctctcctcc ctttccttct cagcagcaaa 240 tgtcccttta tttcagggaa taccccgcac cggaacgcca agcgggaaca aaagcgagtt 300 tcaaggcttg ccatttactg tggggtcaat gtcactccct gttgtagagg aaaggtttct 360 tcctccacct ggctccaaac cgatgacaat ctcggagccc cacgagccca cctcaagaga 420 tgcgctggat ctgctatggc aagttatatc cagagattcc agacgcctct tttccaaggc 480 gcagaaggat tttcaagatt cttgcgcgta tggactcacc actgtgaaag cgtggttgag 540 gggagcattt caaagcttcc tgtggaccgt gatctcattg tggagctttg gcatttgggt 600 cattgtctcc tggaccttct atctagtgac gacatttacc atgcccgtcg tttgtctcgc 660 gttgcttttc gcctgcacag aatttatggt gatggcattg cgatggatgt ttaccggctg 720 gcccacttgc ctcgcttcat tggttttaaa aacggggaag actatcttca cggttcccag 780 attcagaagg aactacagtg aagagaaaca agttaagggg tttatttctt tgaaaatccc 840 ccagagcccc ccccgtggaa gcgtgctact cgtgcaacat gaagacaact ctcacgccgg 900 gtatgccagc tgcgtacggt tatatgacgg cactttagct ctcatgacct gtcaccacgt 960 gggcacaggg gttcccggag gaaaggtgac ctccacgaaa acacctaaca agataccact 1020 ccgcctattc acacctctga tctcttcaga aaaaggagat ttcatgttaa tgagcgggcc 1080 cccaaactgg gagagcctgt taggctgtaa aggagctcac ttcgtctccg catcacaact 1140 tgctaaatct aagatgcggt tcttcttcat tgaaaaagac gagtggatgg ctgatcacgg 1200 tgagattgtc ggtccacgtg atcactggtt tgctacaacg ctctgcaact cagagcctgg 1260 acactctggc accccgatct tcaatggcaa aaccatagtg ggtgtgcacg ctggaggtga 1320 gaatggacag aacttcaatg tgatggcaac gatccctccc gtccccggtt tgacgacccc 1380 tcggtacgtc ttcgagacaa ctgcccctca gggtcgagtc ttcactgatg aggacttaag 1440 tgagatgatg aagagcgtca cctcatatcc ccagttggaa aaatttaaaa gccatactgg 1500 gaagaactgg gcagatgatg aagacttcga aactgaagtc aagagcaaac ccgccccggc 1560 acccgtagct caagaagcca aacccatgag cagtgccgag gaagctccgc cggtgagtaa 1620 atcccggcag tggtacccac gttttcccga gtcgggaaac gagaaaggca gagctgcctg 1680 ccaaaccaac agcaatcctg cccccgcaca agagaagggc aaggagaaga aggtagaggc 1740 cgaaaaggcc cccgcatcgc ccaccccctc aaagcttcca gaatcagccg acggcggcga 1800 aaaatattta gagaagcttt tggagaagct agtggagaga atcgaccttg ccactataga 1860 gaagaaagtg gtggaagtgg tggctcagaa agccatgaag aagccccagg gaagccagcg 1920 gcgcagacga ccgcggagaa cttccaacga tacttcgaag gaagctacaa atgggaggta 1980 ccagcctccc cacaagagat cccagggttc caacgatgcg gaagcctccc ccagtactac 2040 cacccgaagc aaatcaaaag tagtgactgg ggcacccagc tcatccaaga gcacctggag 2100 ctgggagaga aagtctccgg cttcggctgg ccaacagtag gccccaaagc cgaggtgacc 2160 tctctcactt tacaagcaga gaggtggctg caacgcgcgc agtcagctaa aaccccgtca 2220 tctgaggacc gggagcgcgt cataaataaa actgtggagg cctcctcgaa tgttaagact 2280 tttggcccca cagctactag agggaacaag ctcgagtggc ggcaatttct ggaagatttt 2340 aagtcagccg tcctctcttt ggagcttgat gcaggtatag gcgtgccata catcgcctat 2400 ggaagaccca ctcataaagg ttgggtggaa gacccgaaac tcctgccagt gctcgcccga 2460 ctcactttca accgtttaca gaagatgttg gaagtcgagt cttctgatat gagcgctgaa 2520 gagcttgttc aagctggtct ctgtgatcct ataaggactt ttgtgaagag agaaccgcac 2580 aagcaatcta aactcgatga aggacgctac cgcctcatca tgagtgtttc cctagtagat 2640 caattggtag cccgggttct gttccaaaac cagaacaagc gagaaatcgc tctttggagg 2700 gcaaatccct caaaacccgg ttttggctta tctacggatg agcaagtgct ggagtttgta 2760 caggctctgg ccgcacaagt ggaagtctca ccagaagaaa tgattacctc gtgggagaag 2820 taccttgtgc caactgattg ctccggcttt gactggagcg ttgcggaatg gatgctacat 2880 gacgatatgg tcgtccgcaa taaactcaca ctggacttaa atcctacaac ggagaagtta 2940 cgatctgcgt ggctaaaatg catctgcaat agtgtcctgt gtttgagcga tggcactctc 3000 ctcgcccaaa gggtccccgg cgttcagaag tctggtagct acaacacaag tagttcaaat 3060 tcaaggatcc gagttatggc cgcctaccac tgtggggctg actgggccat ggcgatggga 3120 gatgatgccc ttgaatcagt caacaccaac ctagaggtgt ataaaagtct aggtttcaaa 3180 gtcgaggttt caggacaact ggaattctgc tctcacattt ttagagcgcc tgacctcgcc 3240 cttcccgtga atgagcgcaa aatgctgtat aagctcatct tcggatacaa tccgggaagt 3300 gggaatctgg aagtagtcgc gaactacatt gccgcctgcg tatcagttct gaatgaactg 3360 cggcatgacc cagatttagt tgctctcctt cactcgtggc tagtctctcc agtgctgcca 3420 caaaataatt gaagagagag ccgataacta gccaagcata catcagttgc aagcgttgga 3480 aagttttagt ctgattacca acagcctgac ataatagatt ataaattttt agcaggattt 3540 gcgtttggat tcttatccgc aatcccaatt tctgtagcag gcatatacct agtctacctt 3600 aagatctcag cccacgttcg cgcaatcgtt aatgaatacg ggaggggtta ggagaaataa 3660 taatggaaat ggtggatcac gtaacacccg ccgtcgtaga cgcccacgac aggttcgccc 3720 tgtcgttgtg gtcgcacccc ctgggcgcac acggcgagga aatcgaagac gacgaaatgg 3780 aggcaggaac cgaagaagcc gaaatagagt tggaggaagg tcgagcaaca gcgaaacttt 3840 catcttcaac aaggactcaa tcaaggatag ttcctcagga tctgtcacct tcgggccgtc 3900 tctatcagag agcgtcgcgc tttcaggtgg agttctcaaa gcctaccatg aatataagat 3960 cacaatggtc aacatacgct tcgtcagtga atcttcttcc acagcggagg gctccatcgc 4020 ttacgagctg gacccccact gcaagcttac tagtctccaa tccaccctgc gtaagttccc 4080 cgtcaccaaa ggcgggcaag cgacttttcg ggcttcgcag attaacgggg tagagtggca 4140 tgatacatcc gaagatcaat ttaggctgct ctacagaggc aatgggacga agaacgttgc 4200 cgccggtttc ttccagatcc ggtttactgt gcaattgcac aacccgaaat aggtagaagg 4260 tagtaccccc cccccccccc ccccttcagg tcctgagcca cccccaccac ccccacagcc 4320 agaaccgtgc aagaagaacc ggttttgggg ttatgaagga aatcctcaga gcaagatctt 4380 gacggcggag aatgatagaa atatcgactc ccgccccttg aattttgtct ctatgtataa 4440 gtgggaagat gagaagtggg ataaagtcaa tctccaggct ggttattcaa gaaacgatcg 4500 gcgatgcatg gagacatacc tgaccattcc agcagacaaa ggaaaattcc atgtctatct 4560 tgaagctgat ggcgagtttg tagtcaagca tattggcggc gatctcgatg gtagttggct 4620 cggcaatatt gcctatgatg tctcgcaaag aggctggact gtgggaaatt acaaagggtg 4680 taaaataaag aattatcaga cgaatatcac ctttgtagcg gggcacccgg aggctaaaat 4740 gaatggcaaa gcttttgaca gcgcccgggc agttgaagtt gattggttcg cttcctttga 4800 acttgagtgt gatgatgaag aaggaagctg gatgatttat cccccgccga tccagaagga 4860 ttcctcctat aactacaccg tgtcatacgg gaattatacg gagaagtatt gtgaatgggg 4920 agccatatcc gtctctatag acgaagacaa cgaggggtac gcaccaagaa gaattccgcg 4980 caagggggaa atggcgtggt cttatccgga gaaagattac tccgaaaaca aaccccagaa 5040 ggaaaactgg gatactgaac ccctggacac aggtgaaatg cagcgagaaa gacaactcgt 5100 taaaactcca tctccggatg tctctgattc tggttcagag tttggggcag atccaatacc 5160 tcaggatctg atcgataagg ttaatagggg agaagcacta gatcctatgc aacaacttga 5220 atacgacaag tataggtttc aggaaaatgt tatcgagctc agtgagtcac aagaccaatc 5280 ttctgagtac cccaagcttc ccccccccgt cccacacaag ccgcttcccc tgggtaggac 5340 tgaaaagttt ttcaggccta gagctgatct tttagaagcc tgggataagg atcacttcga 5400 ccctggttat actaaggaag aagtggccgc ggctacaata atctctcacg gttctataac 5460 tgatgggaga gcagctattg aagaaagaga taacaagatc caacgggccc gagtttcgtg 5520 gcctcatgat aagtcaacga caagtccttc aatagccaaa ttgagagaag agacctctga 5580 aaagaaagct ttatttggcg ggtctctgag acggggttct gaagctgcct cctctctagg 5640 gggtggttct ataactggtg gcactttaaa gtctaagagg acagttgagg aaggaatagt 5700 acctaaactc acgactactc aaaggcttag gtatgagcaa cttaaagctc ggagccaaac 5760 ggccgcaaac gaatatttgt ggtcagttga aattcctccc gagaaaccac caggcccttc 5820 cacattcaaa gggcggtcct agctctggga ccttaaattc tgtgagcata atttgtagtc 5880 caagctctat gactataaag aaacgagcac actgaactcc aagcctgtta gagtataacc 5940 caggcagtct aagctctatg actttaaaat aacgagcata ctgaactcca agcctgttag 6000 agtataaccc aggcagtcta agctctatga ctttaaaata acgagcgtac tgaactccaa 6060 gcctgttaga gtataaccca ggtcgtcatt agctgtagac gtaaaatcag cggtccagtg 6120 ttgaaggctg taaaacactg agtaactcac agcaacgaaa cccgcagaca gatctgtgtg 6180 gaagtaggca tcataattct tagggtaggg gggtgtatag ataccccccc ctggtctatg 6240 atgt 6244 //