Dbfetch
ID AB569998; SV 1; linear; genomic RNA; STD; VRL; 1828 BP. XX AC AB569998; XX DT 20-JUL-2011 (Rel. 109, Created) DT 07-FEB-2013 (Rel. 115, Last updated, Version 2) XX DE Rosellinia necatrix partitivirus 2 CP gene for capsid protein, complete DE cds. XX KW . XX OS Rosellinia necatrix partitivirus 2 OC Viruses; Riboviria; Partitiviridae; Alphapartitivirus. XX RN [1] RP 1-1828 RA Suzuki N., Kondo H.; RT ; RL Submitted (28-JUN-2010) to the INSDC. RL Contact:Nobuhiro Suzuki Okayama University, Institute of Plant Science and RL Resources; Chuou 2-20-1, Kurashiki, Okayama 710-0046, Japan XX RN [2] RX DOI; 10.1371/journal.ppat.1002146. RX PUBMED; 21779172. RA Chiba S., Kondo H., Tani A., Saisho D., Sakamoto W., Kanematsu S., RA Suzuki N.; RT "Widespread endogenization of genome sequences of non-retroviral RNA RT viruses into plant genomes"; RL PLoS Pathog. 7(7):e1002146-e1002146(2011). XX RN [3] RC DOI:10.1128/JVI.02835-12 RX DOI; 10.1128/JVI.02835-12. RX PUBMED; 23236074. RA Chiba S., Lin Y., Kondo H., Kanematsu S., Suzuki N.; RT "Effects of Defective Interfering RNA on Symptom Induction by, and RT Replication of, a Novel Partitivirus from a Phytopathogenic Fungus, RT Rosellinia necatrix"; RL J. Virol. 87(4):2330-2341(2013). XX DR MD5; 006e73598429c937b0b8ed83c8174ea0. DR EuropePMC; PMC3136472; 21779172. DR EuropePMC; PMC3571465; 23236074. DR EuropePMC; PMC5874917; 29559577. XX FH Key Location/Qualifiers FH FT source 1..1828 FT /organism="Rosellinia necatrix partitivirus 2" FT /segment="dsRNA2" FT /strain="W57" FT /mol_type="genomic RNA" FT /country="Japan:Ibaraki" FT /isolation_source="Rosellinia necatrix (plant pathogenic FT filamentous ascomycete)" FT /db_xref="taxon:859651" FT CDS 105..1556 FT /codon_start=1 FT /transl_table=1 FT /gene="CP" FT /product="capsid protein" FT /db_xref="UniProtKB/TrEMBL:F8WL22" FT /protein_id="BAK53192.1" FT /translation="MSTPSVTLSAFKAAVAKSGLEDQFLKLTGLTSMDELSADNFNEKF FT GQADSLTKSILAPSAAPVPHQEQKKEDADAKRVSAPVSASDFLYGFKHMTIQYASRKKN FT NTFLPSAFMMMYIIHEMNVLLCEHFYFKREAPNYHPLLLRTYFGILFIIQTLRAQHAAN FT NLFGDQFEFLEKFLDAYPVDTLPIPAPLIHIFKSLCSSRPEIPQYGYVTPFVPEELWGT FT QLKDSPANALYARNFFPNIPYILSLYATLNSSTIKGSVKEMNSYLGNGTDDRTFAGHAY FT DKDPAQWTEERAFFLRSPGMEHALEGTSSFNKDFFENRFDNLEVPIPSTNDKVKFVDQF FT CYLSKNLAWFRDLVEIASAAAKFFEGSGTLADCSPVGPPVCQVQTTISNVDLHTAPTSI FT SKGKSFYAEAHMKLTTTSRTMDQLSMIMASASHLNLRYAHATHSIQSRTSGPFWSLNPI FT ESSVTDESSLIQVRQTVKKMMKSKV" XX SQ Sequence 1828 BP; 500 A; 554 C; 304 G; 470 T; 0 other; agataagttc ttcgagcaag tctaaccagc ctctactcaa gtttcaaccc atcaaaactt 60 cgcactcacc cgccccctag caatctctgc tccgttcaac caagatgtcg accccctccg 120 tcactctctc cgctttcaag gccgccgtcg ccaaatccgg tctcgaggat caattcctca 180 aacttaccgg ccttacgtcg atggatgaac tctccgctga taacttcaac gagaagttcg 240 gtcaagccga ttcgctcacc aagagcatcc tcgctccgtc cgccgcccct gttccccacc 300 aagaacagaa gaaagaagat gctgatgcca aaagagtctc cgcacccgtc tccgcgtctg 360 acttcctata tggtttcaag cacatgacaa tccaatacgc ctcaaggaag aagaataaca 420 ccttcctccc ctccgccttc atgatgatgt atatcattca tgagatgaac gtcctccttt 480 gcgagcactt ctactttaaa agagaagctc caaactacca cccgctcctt ctccgcacgt 540 atttcggtat tctatttatc atccagaccc tccgcgctca acacgccgcc aacaatttgt 600 tcggcgatca attcgaattc ctcgaaaagt ttctagatgc ataccccgtc gatactcttc 660 ctatccccgc ccccctcatt catattttca aatctctttg ctcctctcgc cccgagatcc 720 cccagtatgg ctatgtcaca cctttcgttc ccgaagaact ttggggtacc caactcaaag 780 attctcctgc caatgcactc tatgcaagga acttcttccc caacatccct tatatcttgt 840 cgctgtacgc taccctcaac agcagcacta tcaaaggatc agtcaaggaa atgaactcct 900 acctcggcaa tggaactgac gaccgcactt ttgctggtca cgcctacgac aaggaccccg 960 ctcaatggac tgaagaacgc gctttcttcc tccgctctcc cggaatggaa cacgctctcg 1020 aaggtacctc atccttcaac aaggatttct tcgaaaaccg atttgataat ttggaagtcc 1080 ccatccccag cactaacgat aaagtcaagt tcgttgacca attctgctat ctctctaaga 1140 acctcgcctg gttccgtgat ctcgttgaga tcgcctccgc cgccgctaag ttcttcgaag 1200 gatcaggcac tctcgctgac tgctccccag tcggaccccc agtatgccaa gtccaaacga 1260 cgatcagcaa tgtcgacctt cacactgccc ccacttcaat tagtaagggt aaatcgtttt 1320 acgctgaagc tcacatgaag ctgaccacca cgtcacggac catggatcaa ctatccatga 1380 tcatggcaag tgcttcgcac ttgaatctta ggtacgctca cgcaacccat agtattcagt 1440 cgcgaacctc aggtcccttc tggtctctca atcctattga gagctctgtc acagatgagt 1500 cctccctgat tcaagtcagg cagaccgtca agaaaatgat gaagtctaag gtctaagaca 1560 cctcttcaat cgtttgctac ctcgcgtccc ccccagaatg tttttttctt ttgtacaatc 1620 tacaattgcg ctgttttctt tttctcgaaa aaaaaaaaaa aatcacaaaa ggctaacgcc 1680 acaaaattca aaaaaaagtt ctctttgaac ctctgtcttg cgattttgtt tctttttttg 1740 agttccgttt tgttacgaaa cttatttatt ttttaaaaaa aaaaaaaaaa aaaaaaaaaa 1800 aaaaacaaaa aaaaaaaaaa aaaaatgt 1828 //