ID   AB569997; SV 1; linear; genomic RNA; STD; VRL; 1985 BP.
XX
AC   AB569997;
XX
DT   07-FEB-2013 (Rel. 115, Created)
DT   07-FEB-2013 (Rel. 115, Last updated, Version 1)
XX
DE   Rosellinia necatrix partitivirus 2 RdRp gene for RNA-dependent RNA
DE   polymerase, complete cds.
XX
KW   .
XX
OS   Rosellinia necatrix partitivirus 2
OC   Viruses; Riboviria; Partitiviridae; Alphapartitivirus.
XX
RN   [1]
RP   1-1985
RA   Suzuki N., Kondo H.;
RT   ;
RL   Submitted (28-JUN-2010) to the INSDC.
RL   Contact:Nobuhiro Suzuki Okayama University, Institute of Plant Science and
RL   Resources; Chuou 2-20-1, Kurashiki, Okayama 710-0046, Japan
XX
RN   [2]
RC   DOI:10.1128/JVI.02835-12
RX   DOI; 10.1128/JVI.02835-12.
RX   PUBMED; 23236074.
RA   Chiba S., Lin Y., Kondo H., Kanematsu S., Suzuki N.;
RT   "Effects of Defective Interfering RNA on Symptom Induction by, and
RT   Replication of, a Novel Partitivirus from a Phytopathogenic Fungus,
RT   Rosellinia necatrix";
RL   J. Virol. 87(4):2330-2341(2013).
XX
DR   MD5; 14599cdad0214ec3edae174f0fa7dcb6.
DR   EuropePMC; PMC3571465; 23236074.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1985
FT                   /organism="Rosellinia necatrix partitivirus 2"
FT                   /segment="dsRNA1"
FT                   /strain="W57"
FT                   /mol_type="genomic RNA"
FT                   /country="Japan:Ibaraki"
FT                   /isolation_source="Rosellinia necatrix (plant pathogenic
FT                   filamentous ascomycete)"
FT                   /db_xref="taxon:859651"
FT   CDS             84..1895
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /gene="RdRp"
FT                   /product="RNA-dependent RNA polymerase"
FT                   /db_xref="GOA:L8B8G3"
FT                   /db_xref="InterPro:IPR001795"
FT                   /db_xref="UniProtKB/TrEMBL:L8B8G3"
FT                   /protein_id="BAM78602.1"
FT                   /translation="MKNITDLPFPSKGVPQFRDALPIHGRDPEVPNPVTDASNRIIDFA
FT                   LRKHLTSDEFDQVVNGYRRSPWNEDALNKDIEKLDSDEHTVIKDQHYENAIQHVQKLLT
FT                   PEKPLQPVHFADLRRYKWRLSTNIGAPFASSKHWQDYVKAKFNHFRDGTPFENIAHRDL
FT                   FVEAHKDSQPLEITDARMTKHNLYTEAFYVSRETIHRIKDGETTDRYGNDARYWNTAFA
FT                   RQHLVKADEDDKVRLVFGAPFSLLCAELMFIWPLFIFLLSLKGSTAFMLWTFETIIGGW
FT                   YRLVNFFTTYALRHSTVVTVDWSGFDRYARHTVIKDIHHRIIRPMFDFSHGYHPTRDYP
FT                   DTSKTKDGQSNEWRITNLWNWMTDAILSTPLLLPNGRFIRFNHSGIYSGYFQTQILDSI
FT                   YNLVMIFTILSRMGFDLDKCVIKVQGDDSIFMLLCCFIMISTSFFTLFKYYAEYYFGAK
FT                   LNEKKSEIRPSLQDAEVLKYRNRNGIPYRDRISLLAQLRHPERRTDVDSVAARCIGIAY
FT                   AACGQDATVYLICEDIYNYLVKKYDAHARQGELDFMFRHLELHDTVPSAATFPSWFDTM
FT                   AHLTDGPRDPVPSHWPTDYFIGLPGRL"
XX
SQ   Sequence 1985 BP; 569 A; 543 C; 352 G; 521 T; 0 other;
     agataagttc tttgaaccgt ctaacccacg ctcttcaaag tttcaaccct tcaaaacttc        60
     gcactcacag aaccttactg acgatgaaga acatcactga cctgcccttc ccctcgaaag       120
     gcgtcccaca atttcgcgac gctcttccga tccacggacg agaccctgaa gttccgaacc       180
     ctgttactga cgcttcgaat cgaattatcg acttcgcgct cagaaagcac ctcacatccg       240
     atgagtttga ccaagttgtc aacggctatc gacgttcccc ctggaatgaa gacgctctca       300
     acaaagacat cgagaaactt gactctgatg aacacactgt catcaaagat caacactacg       360
     agaatgcaat ccaacacgtt cagaagctcc tcaccccaga gaagcccctt caacccgttc       420
     atttcgcaga tctacgcaga tacaaatgga gactctccac taatatcggc gcacccttcg       480
     cttcatcaaa acactggcaa gattacgtaa aagctaagtt caatcacttt cgtgatggaa       540
     caccctttga gaatatcgca caccgcgatc ttttcgtcga ggcacacaaa gactctcaac       600
     cacttgagat caccgacgcc cgtatgacga aacacaatct ctacaccgaa gctttctacg       660
     tttcccgaga aaccattcac cgcatcaaag atggtgagac caccgaccgg tacggcaacg       720
     acgcccgcta ctggaacacc gcattcgcga gacaacacct cgtaaaagca gacgaagacg       780
     acaaagttcg tttagttttt ggcgctccct tttctttact atgtgcagaa ctcatgttca       840
     tatggcctct ctttattttc ctcctctccc tgaaaggatc gaccgcattc atgctctgga       900
     cgttcgaaac tatcattggt ggctggtacc gacttgtgaa ctttttcact acctacgcac       960
     tccgacactc tactgtcgtg actgttgact ggtctggatt tgatcgctac gctcgacaca      1020
     ccgttatcaa agatattcat catcgaatta tccgtcctat gttcgacttt tcacatggat      1080
     accatcctac acgtgactac cctgacacgt ccaagactaa agatggacaa tccaacgaat      1140
     ggagaatcac taatttatgg aattggatga ccgacgctat cctttccact cccttgctcc      1200
     ttcctaacgg aagattcatc cgcttcaatc actctggaat ttattccgga tactttcaga      1260
     cacagatttt agactctatc tataatctag tcatgatctt tactattcta tcaagaatgg      1320
     gatttgatct tgacaaatgt gttattaaag tccaaggcga tgactcaatc ttcatgttac      1380
     tctgttgttt cattatgatt tccacctctt tctttacgct ctttaaatat tatgcagaat      1440
     actattttgg cgcaaaactc aatgagaaga agtccgagat aagaccctcg ctccaagacg      1500
     cagaagtact gaagtatcga aaccgcaacg gtattcccta ccgtgaccgg atttcactac      1560
     tagcacagct acgacatcct gaacgacgca ctgacgttga ttctgtcgca gctcgttgca      1620
     ttggtattgc ttacgcagcc tgtggccaag acgctacagt gtacctcatt tgcgaagata      1680
     tttacaacta tctcgtaaag aagtacgacg ctcacgcacg ccaaggagaa ctagatttca      1740
     tgtttcgaca tctcgaactt catgatactg ttccctccgc cgcaacattc ccaagctggt      1800
     ttgataccat ggcacatctg actgatggac cgcgggaccc tgtcccctcc cattggccaa      1860
     cagactattt tattggtctg cctggtcgtc tctagaatga gacgagtttt atgtttaatt      1920
     ttaacatatg tttctaaaac aaaaaaaaaa aaaaaaaaaa aacaaaaaac ccaaaaaaaa      1980
     aatgt                                                                  1985
//