ID AB558119; SV 1; linear; genomic RNA; STD; VRL; 4557 BP. XX AC AB558119; XX DT 28-OCT-2010 (Rel. 106, Created) DT 22-SEP-2013 (Rel. 118, Last updated, Version 2) XX DE Rhizophagus sp. RF1 medium virus genomic RNA, complete genome. XX KW . XX OS Rhizophagus sp. RF1 medium virus OC Viruses; Riboviria; dsRNA viruses. XX RN [1] RP 1-4557 RA Ikeda Y., Ezawa T.; RT ; RL Submitted (20-APR-2010) to the INSDC. RL Contact:Tatsuhiro Ezawa Graduate School of Agriculture, Hokkaido RL University; Kita 9 Jo Nishi 9 chome, Sapporo, Hokkaido 060-8589, Japan XX RN [2] RA Ikeda Y., Shimura H., Kitahara R., Masuta C., Ezawa T.; RT "A Novel Virus-Like Double-Stranded RNA in an Obligate Biotroph Arbuscular RT Mycorrhizal Fungus: A Hidden Player in Mycorrhizal Symbiosis"; RL Mol. Plant Microbe Interact. 25:1005-1012(2012). XX DR MD5; 87c3fa189701cfc2805cb738275d4ddc. XX FH Key Location/Qualifiers FH FT source 1..4557 FT /organism="Rhizophagus sp. RF1 medium virus" FT /segment="1" FT /host="Rhizophagus sp. RF1" FT /mol_type="genomic RNA" FT /country="Japan:Hokkaido, Rankoshi" FT /db_xref="taxon:758865" FT CDS 41..2824 FT /codon_start=1 FT /transl_table=1 FT /gene="RdRp" FT /product="RNA-dependent RNA polymerase" FT /db_xref="GOA:E2RWR1" FT /db_xref="InterPro:IPR001795" FT /db_xref="UniProtKB/TrEMBL:E2RWR1" FT /protein_id="BAJ23141.1" FT /translation="MRLPPFKPDGVIYESYCSLFNLNDIKDVFNAPANFQIMKYEPIFV FT NSRPRYLYPHDWDYTDGAGAGQSIEVNGVRCFFSDIYSCRWNRFNLNLYSDSVKLVNPK FT SQTVDMTTLTPEDLMDIDQDNTRIYVFGRLDLSHPYFSLDFPSLESAATKIRPSLYFAR FT DGRRLVVPILASAIGKNYLTYQNIRNVIYGCLDDRDNLPEVYKFNVSWVCQQPFLPQDK FT DFFSFNQEVGRWCFVATVNENTPLHIKYLTKNLLDQMRKQMTNDSSLRHYQSTELSHLN FT HEQFANWVVKVKNIKGLHEKTWDKYRLGSDSVIDQYVINYDTAIKEYQKLLGSYVNKER FT IDIDSNLVDELSGLGSVNEKVKWDRCGDNRDRLPFKDDFYNPDESGRRYSHVFMNPSFK FT IFGVRLQRLLSMLDCVIDVKHDKYLQDVFSMVYCVAEVSRRFKLLGDFMKKYGSNLTKD FT WYVYVNLETAIGYKTALPTDEFVHMGGEWIVGDIEHIAPVPNGQLKFYEWLVEGIESTL FT RLKGKSKIMYEKPIEFDEHGNPMETLDQFSYDVSKQLSYRDYVYGCTWSRRGSSSIKTK FT LRAEINGKKVKLSETKNTLAIYGDLEKILKDSLDPDRPQWGKAIRKRERGKIRAVLGMD FT VETYLPMSYIDDIIQPYIIGNELSNLWETNFQRHAKDVDRLILSIEKTKWFIPLDQSGF FT DHQINNNMLLLTLVIIKSWLLSRVKYKGDVERCIEIIIKRLALTNSEVNVDDKINIPVE FT RGILSGWKWTAFMDTLINIGEVNVALRTCEYYGLVCNYKLDAQGDDDDIIIDDLLTGLV FT MCEAYRYCNLKINPAKFFIKNNIDEYLRRVYVDGVSLGYPARMFLTFFESNPIRNVPLS FT EMSELRSVIKNWMDLIRRRSLNNERWVKLVKLMERDILIRVNKNRKISSLSLETIL" FT CDS 2845..4458 FT /codon_start=1 FT /transl_table=1 FT /gene="CP" FT /product="putative coat protein" FT /db_xref="GOA:E2RWR2" FT /db_xref="UniProtKB/TrEMBL:E2RWR2" FT /protein_id="BAJ23142.1" FT /translation="MSLRLRINTKGLAVVIPSGMGKTTLSNKFPSLFLDIDDIVWKKHK FT ILIGIINKAFAWKFGSDLTKNILRRKWLWNDTLSRKVLLCHSPDQLPSGVRVLCILNSN FT SLNVNKIKKERKADNVRISLQNRHSLWENYRDEENYFEVQSNKVMLDTIINCLIKYVDF FT EKPNDNTKLLVPSKDYIGKFVRKERYLRYKVKYDISEPIVMSVREYMMIKDYWRDLYVH FT RKWFKIESYGKDEKHSLTDESVNDQIVTKILPLIDKETLFVLKEYRWDRMITNLMGIKN FT SELVTNWMYTPAYLGGVGIQLDGLRKPMSYITSSESIITPFVKYPKSERVENLTDMILK FT RSKFSVVDNIQVYEGSQSTNKIFKSVGILRFHKVIDNINFRKFEWMISGVDFCKSMIRG FT VELPIKMIRPIFNSNIRINQHAQTIWINGLMRAKDEEITNEILSELFVNVSEIIDKRRN FT FSKIFWRDWLCGRLEYQKPINMWINDNIVSTYFIINLNRLLSLNCNVDYGMLKSMCKII FT EKTELNNIIRYLRERKITLM" XX SQ Sequence 4557 BP; 1646 A; 542 C; 1013 G; 1356 T; 0 other; cgaaatagcg aagaggttgt tatttaagtg gagaaaagat atgcggttac caccttttaa 60 acccgatggt gtaatatatg aaagttattg ttcattgttt aacttaaatg atataaagga 120 tgtgtttaat gctccagcaa atttccagat aatgaaatat gaacctattt ttgtgaatag 180 tagacctaga tatttgtacc cacatgattg ggattatact gatggtgccg gtgctggtca 240 gtcaattgag gtgaatggtg taaggtgttt cttcagtgac atttacagct gtcgttggaa 300 caggtttaat ttaaatctgt actctgatag tgtaaaattg gtcaatccta aatcacagac 360 tgttgatatg acgacactga ctccagagga tttgatggat attgaccaag ataatactag 420 gatatatgtt ttcggtcgat tagatttgag tcacccttat tttagcttgg attttccgtc 480 tttagaaagt gcagctacta aaatacggcc tagtttatat tttgcgagag atggcaggag 540 gttagtagta ccgatcttgg ctagtgctat tgggaagaat tatctgacat accagaatat 600 acgaaatgtc atatatggtt gtttagatga tagagacaat ttaccagaag tttataaatt 660 taatgtgtca tgggtatgtc aacagccctt tctcccgcag gacaaagact tcttttcttt 720 taatcaagaa gtgggtcgtt ggtgcttcgt tgcaaccgtc aacgagaaca ctccattaca 780 catcaaatac ttgacgaaaa acttattaga tcaaatgagg aagcagatga cgaacgattc 840 ttcattaaga cattaccaat caacagaact atctcatttg aaccatgaac agtttgccaa 900 ttgggtagta aaagtgaaga acattaaagg attacacgag aagacatggg acaaatacag 960 acttggttct gacagtgtaa tcgatcagta cgttataaat tatgatacgg ccatcaagga 1020 atatcaaaag ttattaggtt catatgttaa taaggaaagg atagatatag atagtaattt 1080 agtagatgaa ttaagtggac tcggtagtgt taatgagaag gtgaagtggg acagatgtgg 1140 tgataataga gatagactac cttttaaaga tgatttttat aatcctgatg aatcaggtag 1200 gagatatagt cacgtgttta tgaacccgtc attcaagatt tttggtgtgc ggttgcaacg 1260 gttgttaagt atgttagatt gtgtaataga tgtcaaacat gataaatact tacaagatgt 1320 tttcagtatg gtatattgtg tggcagaagt ttctagaagg ttcaaactat taggtgattt 1380 catgaaaaag tatggttcaa acttgacaaa agattggtat gtgtatgtca acttggaaac 1440 agcgataggg tataagacag cacttcccac agatgaattc gttcatatgg gtggagaatg 1500 gattgttgga gatatcgaac atatagcacc tgtgcctaat ggccagttga aattttatga 1560 atggttggtt gaaggtatag aatcgacact gagattgaaa ggtaagtcaa aaataatgta 1620 cgaaaaaccc atcgagtttg atgagcacgg gaacccaatg gagactctag atcaatttag 1680 ttatgatgta agtaagcagc ttagttatag ggattacgta tatgggtgca cttggagtcg 1740 aaggggcagc agtagtatta agacaaagct gagagcagag ataaacggga agaaagtgaa 1800 gcttagtgaa acaaagaata ctctagcaat atacggggat ttggaaaaga tcctgaaaga 1860 tagtcttgat ccggatagac cgcaatgggg taaagctatt aggaaaagag aaagaggtaa 1920 aataagggcg gtacttggaa tggacgtaga aacatatcta ccaatgagtt acatagacga 1980 tataattcaa ccttatataa taggtaatga gttaagtaat ttgtgggaaa caaattttca 2040 aagacatgct aaagatgttg atagattaat attgagtata gagaagacga aatggtttat 2100 accgttagat caatcaggat ttgatcatca aatcaacaac aatatgttgc tgttaacttt 2160 agttattata aaaagctggt tgttgtcaag agtgaaatac aaaggggatg ttgaaagatg 2220 tatcgaaata ataataaaga gattggcact tacgaattca gaagttaatg tagatgacaa 2280 aattaacatc ccagttgaga ggggaatatt gagcggttgg aaatggacag catttatgga 2340 tacgcttata aacattggtg aagttaacgt agcactccgc acctgtgaat attacgggtt 2400 agtgtgcaat tacaaactag atgctcaagg tgatgatgac gatataatca ttgatgatct 2460 gttaaccgga ttagtcatgt gtgaggctta tagatactgc aatctgaaaa taaatcctgc 2520 aaaattcttt ataaagaaca atatagatga gtatttacgt agggtttacg tagacggagt 2580 tagcctaggt tatccggcga gaatgttttt aaccttcttt gagagtaacc cgatacgtaa 2640 cgttccatta agtgagatgt cagagttaag gagtgtgata aagaattgga tggatttaat 2700 acgtaggaga tcattaaata atgagagatg ggtgaaatta gtcaagttaa tggaacggga 2760 tatattgata agggtcaata aaaatagaaa aatatcaagt ttgtcgttgg agactatatt 2820 ataagtaagt ggttaccaaa ttgcatgagt ttaagattac gaattaatac gaaaggtttg 2880 gcagtagtaa taccgagtgg tatgggtaaa accactttaa gtaataagtt tccaagtttg 2940 tttttagata ttgatgacat agtatggaaa aagcataaaa tattaatagg tattatcaat 3000 aaggcatttg catggaaatt cggatcagac cttaccaaaa atatattacg taggaagtgg 3060 ttatggaacg atacgttgag tagaaaagta ttgttatgcc acagtccaga tcagttacct 3120 agtggggtga gagtgttatg catattaaat agtaactcac tgaacgttaa taagataaaa 3180 aaagaaagga aggctgataa tgtaaggata agcttacaga atagacacag tttgtgggag 3240 aattatcggg acgaagaaaa ttattttgaa gttcaaagta acaaggtgat gttagatacg 3300 attattaatt gtttaattaa atacgtagat tttgaaaaac caaatgataa tacaaaatta 3360 ctagtgccaa gtaaggatta tatagggaaa tttgtcagga aagaacgtta tttgagatat 3420 aaagtgaaat atgatatatc cgaaccgata gttatgtcag tacgtgaata tatgatgata 3480 aaggattatt ggcgagatct atatgttcat aggaaatggt ttaaaattga atcttatggc 3540 aaggatgaaa aacatagctt gactgacgaa tcagtaaatg atcagattgt aacgaagata 3600 ttacccttga tagacaaaga aacactgttt gtactaaaag aatatcgttg ggacagaatg 3660 ataacaaatc taatgggaat taagaattct gagttggtga cgaattggat gtatactcct 3720 gcttacctcg gaggtgttgg tatccagtta gatggactaa gaaaaccaat gagctacata 3780 acttctagtg aaagtataat aactcccttt gtaaaatacc caaagtcaga aagggttgaa 3840 aatttaactg atatgatatt aaaaagaagc aaatttagcg ttgtagataa tatacaggtt 3900 tatgaagggt cacaaagtac taataagatc tttaagagtg tcggtatact gagatttcat 3960 aaggttattg acaatatcaa ttttcggaaa tttgaatgga tgatcagtgg tgttgatttt 4020 tgtaaatcaa tgatacgcgg agtcgaattg ccgataaaaa tgataaggcc tatttttaat 4080 agcaatataa gaatcaacca acatgcacag actatatgga ttaatggttt gatgagagct 4140 aaggatgagg aaatcacgaa tgagatatta tcggagttgt tcgtgaatgt gtcggaaatt 4200 attgataaaa gaagaaattt tagtaagatc ttctggagag attggttgtg tgggagattg 4260 gaatatcaga aacctattaa tatgtggata aacgataaca tagtaagtac atactttata 4320 attaatttaa atagattgtt aagtttaaat tgtaatgttg actatgggat gcttaagtct 4380 atgtgtaaaa taatagaaaa aaccgaatta aataatatta taagatattt aagagaaaga 4440 aaaataacac taatgtaagg aatgtataac aagattagtc gatagttata ttagtgaggt 4500 caggtccctt actctttagt aggggttaat cccctcataa aaaaaaaaaa aaaacaa 4557 //