ID AB550911; SV 1; linear; genomic RNA; STD; VRL; 6356 BP. XX AC AB550911; XX DT 20-SEP-2010 (Rel. 106, Created) DT 20-SEP-2010 (Rel. 106, Last updated, Version 1) XX DE Pepper mild mottle virus genomic RNA, complete genome, strain: BR-DF01. XX KW . XX OS Pepper mild mottle virus OC Viruses; Riboviria; Virgaviridae; Tobamovirus. XX RN [1] RP 1-6356 RA Nagata T., de Oliveira L.M., Inoue-Nagata A.K.; RT ; RL Submitted (17-MAR-2010) to the INSDC. RL Contact:Tatsuya Nagata Universidade de Brasilia, Departamento de Biologia RL Celular; Asa Norte, Brasilia, Distrito Federal 70790-900, Brazil XX RN [2] RA De Oliveira L.M., Inoue-Nagata A.K., Nagata T.; RT "The complete genome sequence of Pepper mild mottle virus from South RT America"; RL Unpublished. XX DR MD5; 07315ddab546322bd4f83a69ccb58f79. DR EuropePMC; PMC5264247; 28144631. DR RFAM; RF01072; TMV_UPD-PK3. DR RFAM; RF01088; TLS-PK5. XX FH Key Location/Qualifiers FH FT source 1..6356 FT /organism="Pepper mild mottle virus" FT /strain="BR-DF01" FT /mol_type="genomic RNA" FT /country="Brazil:Brasilia, DF" FT /db_xref="taxon:12239" FT CDS 70..4908 FT /codon_start=1 FT /transl_table=1 FT /transl_except=(pos:3421..3423,aa:OTHER) FT /product="183 kDa protein" FT /db_xref="GOA:E1CHH9" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:E1CHH9" FT /protein_id="BAJ19098.1" FT /translation="MAYTQQATNAALASTLRGNNPLVNDPANRRLYESAVEQCNAHDRR FT PKVNFLRSISEEQTLIATKAYPEFQITFYNTQNAVHSLAGGLRSLELEYLMMQIPYGST FT TYDIGGNFAAHMFKGRDYVHCCMPNMDLRDVMRHNAQKDSIELYLSKLAQKKKVIPPYQ FT KPCFDKYTDDPQSVVCSKPFQHCEGVSHCTDKVYAVALHSLYDIPADEFGAALLRRNVH FT VCYAAFHFSENLLLEDSYVSLDDIGAFFSREGDMLNFSFVAESTLNYTHSYSNVLKYVC FT KTYFPASSREVYMKEFLVTRVNTWFCKFSRLDTFVLYRGVYHRGVDKEQFYSAMEDAWH FT YKKTLAMMNSERILLEDSSSVNYWFPKMKDMVIVPLFDVSLQNEGKRLARKEVMVSKDF FT VYTVLNHIRTYQSKALTYANVLSFVESIRSRVIINGVTARSEWDVDKALLQSLSMTFFL FT QTKLAMLKDDLVVQKFQVHSKSLTEYVWDEITAAFHNCFPTIKERLINKKLITVSEKAL FT EIKVPDLYVTFHDRLVKEYKSSVEMPVLDVKRSLEEAEVMYNALSEISILKDSDKFDVD FT VFSRMCNTLGVDPLVAAKVMVAVVSNESGLTLTFERPTEANVALALQPTITSKEEGSLK FT IVSSDVGESSIKEVVRKSEISMLGLTGNTVSDEFQRSTEIESLQQFHMVSTETIIRKQM FT HAMVYTGPLKVQQCKNYLDSLVASLSAAVSNLKKIIKDTAAIDLETKEKFGVYDVCLKK FT WLVKPLSKGHAWGVVMDSDYKCFVALLTYDGENIVCGETWRRVAVSSESLVYSDMGKIR FT AIRSVLKDGEPHISSAKVTLVDGVPGCGKTKEILSRVNFDEDLVLVPGKQAAEMIRRRA FT NSSGLIVATKENVRTVDSFLMNYGRGPCQYKRLFLDEGLMLHPGCVNFLVGMSLCSEAF FT VYGDTQQIPYINRVATFPYPKHLSQLEVDAVETRRTTLRCPADITFFLNQKYEGQVMCT FT SSVTRSVSHEVIQGAAVMNPVSKPLKGKVITFTQSDKSLLLSRGYEDVHTVHEVQGETF FT EDVSLVRLTPTPVGIISKQSPHLLVSLSRHTRSIKYYTVVLDAVVSVLRDLECVSSYLL FT DMYKVDVSTQXQLQIESVYKGVNLFVAAPKTGDVSDMQYYYDKCLPGNSTILNEYDAVT FT MQIRENSLNVKDCVLDMSKSVPLPRESETTLKPVIRTAAEKPRKPGLLENLVAMIKRNF FT NSPELVGVVDIEDTASLVVDKFFDAYLIKEKKKPKNIPLLSRASLERWIEKQEKSTIGQ FT LADFDFIDLPAVDQYRHMIKQQPKQRLDLSIQTEYPALQTIVYHSKKINALFGPVFSEL FT TRQLLETIDSSRFMFYTRKTPTQIEEFFSDLDSNVPMDILELDISKYDKSQNEFHCAVE FT YEIWKRLGLDDFLAEVWKHGHRKTTLKDYTAGIKTCLWYQRKSGDVTTFIGNTIIIAAC FT LSSMLPMERLIKGAFCGDDSILYFPKGTDFPDIQQGANLLWNFEAKLFRKRYGYFCGRY FT IIHHDRGCIVYYDPLKLISKLGAKHIKNREHLEEFRTSLCDVAGSLNNCAYYTHLDDAV FT GEVIKTAPPGSFVYRALVKYLCDKRLFQTLFLE" FT CDS 70..3423 FT /codon_start=1 FT /transl_table=1 FT /product="126 kDa protein" FT /db_xref="GOA:E1CHI0" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:E1CHI0" FT /protein_id="BAJ19099.1" FT /translation="MAYTQQATNAALASTLRGNNPLVNDPANRRLYESAVEQCNAHDRR FT PKVNFLRSISEEQTLIATKAYPEFQITFYNTQNAVHSLAGGLRSLELEYLMMQIPYGST FT TYDIGGNFAAHMFKGRDYVHCCMPNMDLRDVMRHNAQKDSIELYLSKLAQKKKVIPPYQ FT KPCFDKYTDDPQSVVCSKPFQHCEGVSHCTDKVYAVALHSLYDIPADEFGAALLRRNVH FT VCYAAFHFSENLLLEDSYVSLDDIGAFFSREGDMLNFSFVAESTLNYTHSYSNVLKYVC FT KTYFPASSREVYMKEFLVTRVNTWFCKFSRLDTFVLYRGVYHRGVDKEQFYSAMEDAWH FT YKKTLAMMNSERILLEDSSSVNYWFPKMKDMVIVPLFDVSLQNEGKRLARKEVMVSKDF FT VYTVLNHIRTYQSKALTYANVLSFVESIRSRVIINGVTARSEWDVDKALLQSLSMTFFL FT QTKLAMLKDDLVVQKFQVHSKSLTEYVWDEITAAFHNCFPTIKERLINKKLITVSEKAL FT EIKVPDLYVTFHDRLVKEYKSSVEMPVLDVKRSLEEAEVMYNALSEISILKDSDKFDVD FT VFSRMCNTLGVDPLVAAKVMVAVVSNESGLTLTFERPTEANVALALQPTITSKEEGSLK FT IVSSDVGESSIKEVVRKSEISMLGLTGNTVSDEFQRSTEIESLQQFHMVSTETIIRKQM FT HAMVYTGPLKVQQCKNYLDSLVASLSAAVSNLKKIIKDTAAIDLETKEKFGVYDVCLKK FT WLVKPLSKGHAWGVVMDSDYKCFVALLTYDGENIVCGETWRRVAVSSESLVYSDMGKIR FT AIRSVLKDGEPHISSAKVTLVDGVPGCGKTKEILSRVNFDEDLVLVPGKQAAEMIRRRA FT NSSGLIVATKENVRTVDSFLMNYGRGPCQYKRLFLDEGLMLHPGCVNFLVGMSLCSEAF FT VYGDTQQIPYINRVATFPYPKHLSQLEVDAVETRRTTLRCPADITFFLNQKYEGQVMCT FT SSVTRSVSHEVIQGAAVMNPVSKPLKGKVITFTQSDKSLLLSRGYEDVHTVHEVQGETF FT EDVSLVRLTPTPVGIISKQSPHLLVSLSRHTRSIKYYTVVLDAVVSVLRDLECVSSYLL FT DMYKVDVSTQ" FT CDS 4909..5682 FT /codon_start=1 FT /transl_table=1 FT /product="movement protein" FT /db_xref="GOA:E1CHI1" FT /db_xref="InterPro:IPR001022" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:E1CHI1" FT /protein_id="BAJ19100.1" FT /translation="MALVVKDDVKISEFINLSAAEKFLPAVMTSVKTVRISKVDKVIAM FT ENDSLSDVDLLKGVKLVKDGYVCLAGLVVSGEWNLPDNCRGGVSVCLVDKRMQRDDEAT FT LGSYRTSAAKKRFAFKLIPNYSITTADAERKVWQVLVNIRGVAMEKGFCPLSLEFVSVC FT IVHKSNIKLGLREKITSVSEGGPVELTEAVVDEFIESVPMADRLRKFRNQSKKGSNKYV FT GKRNNNNGLNKEGKLFDKVKIGQNSESSDAESSSF" FT CDS 5685..6158 FT /codon_start=1 FT /transl_table=1 FT /product="coat protein" FT /db_xref="GOA:Q780A7" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:Q780A7" FT /protein_id="BAJ19101.1" FT /translation="MAYTVSSANQLVYLGSVWADPLELQNLCTSALGNQFQTQQARTTV FT QQQFSDVWKTIPTATVRFPATGFKVFRYNAVLDSLVSALLGAFDTRNRIIEVENPQNPT FT TAETLDATRRVDDATVAIRASISNLMNELVRGTGMYNQALFESASGLTWATTP" XX SQ Sequence 6356 BP; 1890 A; 1170 C; 1513 G; 1783 T; 0 other; gtaaattttt cacaatttaa caacaacaac acaaacaaca aacaacatta caaacaaaat 60 acaactacaa tggcttacac acaacaagct accaacgccg cattagcaag tactctccga 120 gggaataacc ccttggtgaa cgatcctgct aatcggagac tgtacgaatc agcggtcgaa 180 caatgcaatg cacatgaccg caggcccaag gttaattttt taaggtcgat aagcgaagag 240 cagacgctta tcgcaactaa ggcctaccct gagttccaaa tcacgttcta caatacgcag 300 aacgctgtgc acagtctcgc aggtggactt cggtctttgg aactagaata cttgatgatg 360 cagatcccct acggttcaac gacatatgat atcgggggaa attttgctgc tcacatgttt 420 aaaggtcgtg actacgttca ttgctgcatg cctaacatgg acttacgtga cgtcatgcgt 480 cacaatgctc aaaaggatag tattgaactg tacctttcaa agcttgcgca aaagaaaaag 540 gtaataccgc catatcaaaa gccatgcttt gataaataca cggacgatcc gcaatcagta 600 gtgtgctcga aaccttttca acactgcgaa ggcgtttcgc actgcacgga taaagtatac 660 gctgtcgctt tgcacagttt atacgacatt ccagcagatg aatttggggc agcacttctg 720 aggagaaatg ttcatgtctg ctatgctgct ttccactttt ctgagaatct tcttttagaa 780 gattcgtatg tcagtcttga cgacataggc gctttcttct cgagagaggg cgatatgttg 840 aacttttctt ttgtagcaga gagtacttta aattatactc attcctatag taatgtgctt 900 aagtatgtgt gtaagactta cttccccgct tctagtagag aagtgtacat gaaggagttt 960 ttggtaacta gggtaaatac ttggttttgt aagttttcaa ggttagatac ctttgtacta 1020 tatagaggtg tataccacag aggtgtagac aaggagcaat tttacagtgc aatggaagat 1080 gcttggcatt acaaaaagac tttggcgatg atgaacagcg aaagaatcct cttagaggat 1140 tcatcgtctg ttaattattg gtttccaaag atgaaagata tggtgatagt acctttgttc 1200 gacgtatctt tacagaacga ggggaaaagg ttagcaagaa aggaggtcat ggtcagcaag 1260 gacttcgttt atactgtgct taatcatatt cgcacatacc agtcgaaagc gcttacttac 1320 gccaatgtat tatcgttcgt tgagtcgata agatcaagag tgataatcaa tggggtgact 1380 gcgcgctcag agtgggatgt ggataaggcc ttgttgcagt ccctgtcaat gacttttttc 1440 ttgcagacca aattggccat gctcaaggat gacctcgtgg ttcagaaatt ccaagtgcat 1500 tccaaatcgc tcactgaata tgtctgggat gagattactg ctgcttttca taattgtttt 1560 cctacaatca aggagaggtt gattaacaag aaactcataa ctgtttcgga aaaggctctt 1620 gaaattaaag tacctgattt gtatgtaact ttccacgata gattggttaa ggagtacaag 1680 tcttcggtgg aaatgccggt actggacgtt aaaaggagct tggaagaagc agaagtgatg 1740 tacaatgctt tgtcagaaat ctcaattctt aaagatagtg acaagtttga tgttgatgtt 1800 ttttcccgga tgtgtaatac attaggtgta gatccattgg tggcagcaaa ggtaatggta 1860 gctgtggttt caaatgagag tggtttgacc ttaacgtttg agaggcctac cgaagcaaat 1920 gtcgcacttg cattgcaacc gacaattaca tcaaaggagg aaggttcgtt gaagattgtg 1980 tcgtcagacg taggtgagtc ctcaatcaag gaagtggttc gaaaatcaga gatttctatg 2040 cttggtctaa caggcaacac agtgtccgat gagttccaaa gaagtacaga aatcgagtcg 2100 ttgcagcagt tccatatggt atccacagag acgattatcc gtaaacagat gcatgcgatg 2160 gtgtatactg gtccgctaaa agttcaacaa tgcaagaact atttagacag cctggtagcc 2220 tcgctctctg ctgcggtatc aaacctgaag aagataatca aagacacagc tgctatagac 2280 ctcgagacta aggaaaaatt tggagtctac gacgtgtgcc ttaagaaatg gttggtgaaa 2340 cctctatcaa aaggacatgc ttggggtgta gtgatggact cagactataa gtgctttgtt 2400 gcgcttctca catacgatgg cgagaacatt gtgtgcggag agacatggcg tagagtcgca 2460 gtgagctccg aatctttggt gtattcagat atggggaaga taagagctat acgctcagtg 2520 cttaaagacg gtgaacccca tataagcagt gcaaaggtta cacttgttga tggtgttcct 2580 ggttgcggaa agacaaagga gattctttcg agggtcaact ttgacgaaga tctagttctg 2640 gtaccaggaa aacaggctgc tgaaatgata agaagaaggg caaacagttc tggtttaatc 2700 gtggcgacca aggagaatgt aaggacggta gactctttct taatgaatta cggtcgaggt 2760 ccgtgccaat acaaaaggct gtttctggat gaaggtctaa tgttacaccc tggttgtgtt 2820 aattttctgg ttggcatgtc tctatgctcc gaggcttttg tttatggaga cacccagcag 2880 attccttaca tcaacagagt tgcaactttt ccctatccta agcatttgag tcaactcgag 2940 gtcgatgctg ttgaaactcg cagaacaacg ttgcggtgtc cagctgatat caccttcttc 3000 ttgaatcaga agtacgaagg gcaagttatg tgcacatcaa gtgttacacg ctcggtgtca 3060 cacgaggtca tccaaggtgc agcggtaatg aatccagtgt ctaaaccact taaagggaag 3120 gtgattacat tcactcagtc agacaagtca ttgctgctct cgaggggtta cgaagatgtg 3180 cataccgttc atgaggtgca aggggaaacg tttgaagacg tctcactagt gaggctaacg 3240 cctacacccg tgggaataat ttcgaagcag agtccgcacc tgttggtctc attgtctagg 3300 catacaaggt cgatcaaata ttacacagtt gtgctagatg cagtcgtttc agtgcttaga 3360 gatctggagt gtgtgagtag ttacctgtta gatatgtaca aagttgatgt gtcgactcaa 3420 tagcaattac agatagaatc ggtgtacaaa ggtgttaacc ttttcgtcgc agcaccaaaa 3480 acaggagatg tttctgacat gcaatattat tacgacaagt gtttgccggg aaacagtact 3540 atactcaatg agtatgatgc tgtaaccatg caaatacgag agaatagttt gaatgtcaag 3600 gattgtgtgt tagatatgtc gaaatcggtg cctcttccga gagaatctga gacgacattg 3660 aaacctgtga tcaggactgc tgctgaaaaa cctcgaaaac ctggattgtt ggaaaatttg 3720 gtcgcgatga tcaaaagaaa tttcaactct cccgaattag taggggttgt tgacatcgaa 3780 gacaccgctt ctctagtagt agataagttt tttgatgcat acttaattaa agaaaagaaa 3840 aaaccaaaaa atatacctct gctttcaagg gcgagtttgg aaagatggat cgaaaagcaa 3900 gagaagtcaa caattggcca gttggctgat tttgacttta ttgatttacc agccgttgat 3960 caatacagac acatgatcaa gcagcagccg aaacagcgtt tggatcttag tattcaaact 4020 gaatacccgg ctttgcaaac tattgtgtat catagcaaga aaatcaatgc gctttttggt 4080 cctgtatttt cagaattaac aagacagctg ctagagacaa ttgacagttc aagattcatg 4140 ttttatacaa ggaaaacgcc tacacagatc gaagaatttt tctcagatct ggactctaat 4200 gttcctatgg acatattaga gctagacatt tccaagtatg acaaatcaca gaacgaattt 4260 cattgtgcag tcgagtatga gatttggaaa aggttaggct tagacgattt cttggctgaa 4320 gtttggaaac acgggcatcg gaagacaacg ttgaaagact acacagccgg aataaaaacg 4380 tgtttgtggt accagaggaa aagcggtgat gtcaccacat tcattggaaa cacgatcatt 4440 attgctgcat gtctgtcctc tatgctaccg atggagagat tgattaaagg tgccttttgt 4500 ggtgatgata gtatattata ctttccaaag ggcactgatt tccccgatat tcaacagggc 4560 gcaaaccttc tctggaattt tgaagccaag ttgtttagga agagatatgg ttacttttgc 4620 ggtaggtaca taattcacca tgacagaggc tgtattgtat attatgaccc tctaaaattg 4680 atctcgaaac tcggtgcaaa acacatcaag aatagagaac atttagagga atttaggacc 4740 tctctttgtg atgttgctgg gtcgttgaac aattgtgcgt actatacaca tttggacgac 4800 gctgtcggtg aggttattaa gaccgcacct cctggttcgt ttgtttatag agcattagtt 4860 aagtacttgt gtgataaaag gttatttcaa acattgtttt tggagtaaat ggcgttagta 4920 gtcaaggacg acgttaagat ttctgagttc atcaatttgt ctgccgctga gaaattttta 4980 cctgctgtta tgacttcggt caagacggta cgaatttcga aagttgacaa agtgattgca 5040 atggaaaacg attcgttatc cgatgtagat ttgctcaaag gtgtaaagct tgttaaggat 5100 ggttatgtgt gtttagcagg gttagttgtg tccggggagt ggaacctacc cgacaactgc 5160 agaggtggag taagcgtttg tttagtagat aagagaatgc aaagagatga cgaagcaaca 5220 cttggatctt atagaaccag tgcagctaag aaacgatttg ccttcaaatt gatcccgaat 5280 tatagcatta ctaccgccga tgctgagaga aaagtttggc aagttttagt taatatcaga 5340 ggtgttgcca tggaaaaggg tttctgtcct ttatctttgg agtttgtctc agtttgtatt 5400 gtacacaaat ccaatataaa attaggcttg agagagaaaa ttactagtgt gtcagaagga 5460 ggacccgttg aacttacaga agcagtcgtt gatgagttca tcgaatcagt tccaatggct 5520 gacagattac gtaaatttcg caatcaatct aagaaaggaa gtaataagta tgtaggtaag 5580 agaaataata ataatggttt gaataaggaa gggaagctgt ttgataaggt taaaattggg 5640 cagaactcgg agtcatcgga cgccgagtct tcttcgtttt aactatggct tacacagttt 5700 ccagtgccaa tcaattagtg tatttaggtt ctgtatgggc tgatccatta gagttacaaa 5760 atctgtgtac ttcggcgtta ggcaatcagt ttcaaacaca acaggctaga actacggttc 5820 aacagcagtt ctctgatgtg tggaagacta ttccgaccgc tacagttaga tttcctgcta 5880 ctggtttcaa agtttttcga tataatgccg tgctagattc tctagtgtcg gcacttctcg 5940 gagcctttga tactaggaac aggataatag aagttgaaaa tccgcaaaat cctacaactg 6000 ccgagacgct tgatgcgacg aggcgggtag atgatgcgac ggtggccatt agggccagta 6060 taagtaacct catgaatgag ttagttcgtg gcacgggaat gtacaatcaa gctctgttcg 6120 agagcgcgag tggactcacc tgggctacaa ctccttaaac atgatggcat aaataagttg 6180 gacgaacatt aaacgtccgt ggcgagtacg ataactcgta gtgtttttcc ctccacttaa 6240 atcgaagggt tgtcgttggg atggaacgca attaaataca tgtgtgacgt gtatttgcga 6300 acgacgtaat tattttcagg ggttcgaatc ccccccgaac cgcgggtagc ggccca 6356 //