ID AB516442; SV 1; linear; viral cRNA; STD; VRL; 6413 BP. XX AC AB516442; XX DT 15-AUG-2009 (Rel. 101, Created) DT 16-AUG-2009 (Rel. 101, Last updated, Version 2) XX DE Orchid fleck virus viral cRNA, segment RNA1, complete sequence, isolate: DE NHHS1. XX KW . XX OS Orchid fleck dichorhavirus OC Viruses; Riboviria; Negarnaviricota; Haploviricotina; Monjiviricetes; OC Mononegavirales; Rhabdoviridae; Dichorhavirus. XX RN [1] RP 1-6413 RA Kim S.R., Chung B.N., Choi G.S., Chang M.U., Choi J.K.; RT ; RL Submitted (11-AUG-2009) to the INSDC. RL Contact:Sung Ryul Kim National Institute of Horticultural & Herbal Science, RL Horticultural & Herbal Crop Environment Division; Kwonsun-gu Tap-dong, RL 540-41, Suwon 441-440, South Korea E-mail :chbn7567@korea.kr Phone RL :82-31-290-6236 XX RN [2] RA Kim S.R., Chung B.N., Choi G.S., Chang M.U., Choi J.K.; RT "Characterization and sequence analysis of Orchid fleck virus from RT cymbidium"; RL Unpublished. XX DR MD5; 9628d9f839dfabbd2719c50f7de42801. DR EuropePMC; PMC3735072; 23887919. XX FH Key Location/Qualifiers FH FT source 1..6413 FT /organism="Orchid fleck dichorhavirus" FT /segment="RNA1" FT /isolate="NHHS1" FT /mol_type="viral cRNA" FT /isolation_source="oriental cymbidium imported from China" FT /db_xref="taxon:152177" FT CDS 228..1580 FT /codon_start=1 FT /transl_table=1 FT /gene="N" FT /product="nucleocapsid protein" FT /db_xref="GOA:C6L8Q5" FT /db_xref="InterPro:IPR004902" FT /db_xref="UniProtKB/TrEMBL:C6L8Q5" FT /protein_id="BAH97109.1" FT /translation="MANPSEIDYMTPLSAYEGVPAEYQEATSSPTPKEYTRDAAKAIPI FT CILPAPPGNEVEVAEAFREATQGTETVLSKLQLAQIMSLGFMIQMSGDPEALMQGVAEG FT SFLEAMTMPDIKTRQDSRITAAIAAMALDPTEEGPNDLEDRSQQADAESAMSKARAMVY FT ICLSLMRLAVKPAESFMKGVHQIKQAYSVLVGEHSEFLFNYSYSEGMCRNIADMFNQCD FT DLKATLCHHCAIADETHHTNRKRHGLLRFLILQHVDLTGMIPYGMYIDMRRHFTLLTPG FT QLLTWLHDNQVSRPLSVIADINTRCDVSNGSDRFWRYSRGLDPGFFIALQQSKCVTLIA FT RMAHILVKGGAVAVNEYSDPRKAKSLENKPGLAAEADKFATEFVEAYNGLSGSSANAGP FT VSRKLYNQGRGIPTRRGLFTPPSARPAPVVNVHVPAASSSLTGALDAMNSD" FT CDS 1728..2441 FT /codon_start=1 FT /transl_table=1 FT /product="hypothetical protein" FT /note="ORF2" FT /db_xref="UniProtKB/TrEMBL:C6L8Q6" FT /protein_id="BAH97110.1" FT /translation="MFTTKVNMYPEVPSSSQVSDDIDNDTHVDEVAAFVRKWSAAGLSP FT PVTLAKNLRAWVASNTNPGNPLVLDDRMLSLTTMIWNTAAEHYTMIGKSQVNRMSALID FT QLGEISGRKPQQGPSLDMPPPPPKRKHPDSLDTNPILGLIGQDWDEKKDKQWREKPADK FT KHLVLNWVLHEYLGVLTKPVTIKWITDNPSSLELGAVSAYALKHQASLSDCDKEALRAL FT VVQTVKNTPKRPCLD" FT CDS 2682..3689 FT /codon_start=1 FT /transl_table=1 FT /product="hypothetical protein" FT /note="ORF3" FT /db_xref="UniProtKB/TrEMBL:C6L8Q7" FT /protein_id="BAH97111.1" FT /translation="MSTLPVSTLHRSNARDEVRETASRRMAHGSDSNVTDFNKNLQTAE FT AWQKRLIHKTSIKVTGSEGEGRITMVRKPILFDIMNSLNSILPTSTKPTWIMGMAIKWV FT PTCDLSTTGTIKVSIQNKAVNNPVLRDHTVVSMTQRVTTPFEVQYTSSSKLANRTGTRG FT NPWMYTYCIEGMDDAPIDMEVGDIVVMPMIRSDDTTTQWYEGVKCNVYGGYFPLNIPVV FT TYCAPGPRFKTNMNEIKSNIEMLRRYLNVQGFTDIDEDLVFKMIQCCDGETAGSIMKGI FT RSSVWAPLAKTDRDYVAIKEMLHDCRVGRVLSYITLSEVEGLSTMGGDKSHSYR" FT CDS 3830..4381 FT /codon_start=1 FT /transl_table=1 FT /product="hypothetical protein" FT /note="ORF4" FT /db_xref="UniProtKB/TrEMBL:C6L8Q8" FT /protein_id="BAH97112.1" FT /translation="MSKQINMCTVMSFRSLITVIGPRSVDLGAGFKEAVLRAITSLKVK FT AKDPKGAEIDGPWQELLVEIATMTKSAFTGPTIKKDLEQGNVYRYAMTVGGMLSTSHNT FT NGRLMTVRTGPLYDTDHYHVSGEVDIDKMDGFKATITLSVATVKRERQQCEAGIGEYHV FT LPIKDKNPPRSASNTAGPSG" FT CDS 4580..6208 FT /codon_start=1 FT /transl_table=1 FT /gene="G" FT /product="glycoprotein" FT /db_xref="GOA:C6L8Q9" FT /db_xref="UniProtKB/TrEMBL:C6L8Q9" FT /protein_id="BAH97113.1" FT /translation="MSTFCSLTVLMFLLISGFEALSLVPKTVCEKEVGLHVDEWLHSCL FT GACKSSDNDLDMTPHMLMEPTLEYFKAFGYFIHVSTLTKSSHTFLLGGCHITSQETPSD FT SQELPTNMAENILRHGGPEGEIIMTKEPQCSLWSDNYVKGMLVKYHRVILTVSHTKSGI FT TVLYEQEGVIGHGKVGKTTSSSGTLVWDVRAQYPKCNYRPTGVLSCKREESYIRCRGMS FT EERISSITEDCGVIILTTDTRNIYGYHKHDGALTTTQTDDNQIGMVKKIIEIENLMCHH FT LCESSSEEGGVTHHEYLVSTPIGPWLAVSTESHRTMFMCTDESAVSLVVPVVLCGNGPL FT VKVRVNEREQWWNISSPYVGMGTHCVPGLSTGLSTVDGVINTWLGQVTIVNGSFTFKRD FT FINKNFHGAFRPSQFSWSHKTGNDLEHIIDALNTQEKVLSHSHVIESHSVGAGENAVHS FT FIGMFTTVFEWIQSLIPNVKGWIIRIFLWALLAALVILLLWILWKVLWLFIKSVFLRRT FT IQAVPTSENSDTSLNRAIHNWAKMD" XX SQ Sequence 6413 BP; 1854 A; 1476 C; 1571 G; 1512 T; 0 other; acacaggata acccgctatt ggtcttctag tgcaagtggc agaaatgacc gcttaaacag 60 atcccctaag tttggatgct gagctagcgc ggtagtgtat tggtgagtcc ttctccctta 120 gctacggtcc cagccctaaa tacatgatgt aaacaaaaca acaagtggat aaaaattgca 180 ctgattgaac aaaattgtac taatatttct ctctctacgt aggaaacatg gctaacccaa 240 gtgagattga ttacatgact cccctctctg catacgaggg agttcctgct gaataccaag 300 aagcaacaag ctccccaaca ccgaaggaat acaccagaga tgcagccaaa gcgatcccaa 360 tatgcatcct ccctgccccg ccaggcaatg aggttgaggt ggctgaagcc ttcagagagg 420 caacacaggg cactgaaacg gtcctgtcaa agttgcaact ggcacaaata atgtctctgg 480 gatttatgat ccagatgtcg ggagatcctg aggcattgat gcagggagtg gcagaggggt 540 cattcctgga ggccatgacc atgccggaca ttaagacgag gcaggacagc aggatcacag 600 cagccatagc agccatggca ttggacccaa cagaggaggg gccaaatgac ctggaggaca 660 gatctcagca ggcagatgcg gagagtgcga tgtccaaggc cagagcaatg gtgtacatat 720 gcttaagcct catgagactg gctgtgaagc cggctgagtc atttatgaag ggtgttcatc 780 agatcaaaca ggcgtattca gtcctggtag gagagcattc tgaattcctg ttcaattact 840 cctattcaga aggaatgtgc aggaatatag ccgacatgtt caaccaatgt gatgatctca 900 aagcaactct ttgccatcac tgtgccatag cagatgagac gcaccacaca aataggaaga 960 ggcacggact tctcagattc ctaatccttc aacatgtgga tcttacgggg atgatcccat 1020 atggaatgta cattgacatg cgaaggcact tcaccctctt aacacccggc cagttgctaa 1080 catggcttca tgacaaccag gtatctaggc ctctcagtgt gattgcggac ataaacacca 1140 ggtgtgatgt ttctaacggg tcagaccggt tctggaggta ctcaaggggt ctagacccag 1200 gattcttcat agctttacaa cagtcaaaat gtgtcactct gatagccagg atggcacata 1260 tactggtgaa gggaggagcc gtcgctgtca atgaatactc cgatcctcga aaggcaaagt 1320 cattggagaa caagcctgga ctggcagcgg aggcagacaa gttcgccact gagttcgtgg 1380 aggcatacaa cggcctatca ggatcaagtg caaacgccgg ccctgtatcc cgcaaactct 1440 acaaccaggg caggggcatc ccgacccgca ggggcctgtt cacaccccct tccgccagac 1500 ctgcgcccgt tgtgaatgta cacgtccctg ccgcctcgtc ctctctgaca ggggccctgg 1560 atgccatgaa cagtgactga cagccatctc tccatggaag accccatctc tatcataaca 1620 atatgctata tatgcgtgca tttaaataaa acaacaacag cggaacttgt gtttgtttat 1680 cacttcatat atattaacag cttcacatat attctcattc cagggaaatg ttcaccacca 1740 aggtaaatat gtacccagag gtccccagct catcccaagt gtccgacgac atagataacg 1800 acacacacgt agatgaggtc gcagcatttg tgaggaaatg gtcagctgcc ggactatctc 1860 cccccgtcac ccttgcaaag aacctcagag catgggtagc gagcaacacc aacccaggga 1920 accccttggt gctggacgac aggatgctta gtctcacgac catgatatgg aacacagcag 1980 cggagcatta tactatgatc ggtaaatctc aggtcaatcg tatgtcagcg cttattgacc 2040 agctggggga gatctccggc cgaaaaccgc agcagggtcc ttcactcgac atgccacctc 2100 cccctcctaa gaggaaacac ccggattcac tagacactaa ccctatctta ggcttaatag 2160 gtcaggactg ggacgagaag aaggacaaac agtggaggga gaagccagca gataagaaac 2220 atctagtgct caactgggtg ttacatgaat atttgggagt cctaacaaaa ccggtaacga 2280 tcaagtggat aacagacaat ccgtcgtctc tggagttggg agcagtttca gcatacgccc 2340 tgaaacatca ggccagcttg tccgactgtg acaaagaggc cctcagagca cttgtggttc 2400 aaacagtgaa gaacaccccc aaaaggccat gcctggacta ggtgatattc tatcagcttt 2460 atcatatata tgtttctcat tgtctgtcat gcatatgata atagaaatgc tcaatagtga 2520 ctcaccggac tccataatat atgtactagg cattatgcag tacgtcgttg taattcatgc 2580 atttaaataa aacatcaact tatgtcatta actgttatca tattttctat aatcataata 2640 tatatacttg ttcttgtgtc aaccatcctg caggagctaa gatgtccaca ctgccagtgt 2700 ctactcttca caggtccaac gctagggacg aggtcaggga gacagcaagt cgtaggatgg 2760 cccacgggtc cgacagcaat gtgacggact tcaacaaaaa tctgcaaact gctgaggctt 2820 ggcagaaacg cctaatacac aaaacgtcca tcaaggtgac tgggtcggaa ggtgagggga 2880 ggatcaccat ggtgagaaag cccatactgt ttgacatcat gaacagtcta aacagcatac 2940 ttcccacatc gacaaagcca acatggatca tggggatggc catcaagtgg gttccgacat 3000 gtgacctgtc cacaacaggg accatcaagg tatcaatcca gaataaggct gtcaacaatc 3060 ctgttttaag ggatcacact gttgtctcca tgacccaaag agtcacaacc ccatttgagg 3120 tccaatacac atcatcctcc aagctagcca accggacagg cacgaggggg aatccctgga 3180 tgtatacata ttgcatagag ggaatggatg acgctccgat agacatggag gtgggggata 3240 ttgttgttat gcctatgatt aggtccgatg acaccactac acagtggtat gagggtgtga 3300 agtgcaatgt gtatggaggt tacttccctc tgaatatacc ggtggtcacc tactgtgcac 3360 ccggacctag gttcaagacc aatatgaatg agataaaatc aaacatagag atgctcagga 3420 ggtatctcaa cgtccaggga tttaccgata tagatgaaga tctggtcttc aaaatgatac 3480 agtgttgcga cggggagact gcaggatcta taatgaaggg gataagatcc tcagtgtggg 3540 ctcctttggc caagactgac agggattatg ttgcaattaa ggagatgctt catgactgtc 3600 gggtgggcag agtactgagc tacatcaccc tcagcgaggt agagggtctc agcaccatgg 3660 gaggtgacaa aagccacagc tatcgttaat tgttactcgg gctaaggacc ctgacggaga 3720 atgctgcctt cccaataagc atatctactt atctaccgta atttaaataa aacaacaatc 3780 ttcgaatcat tgatcattta tatatcagat ctaacaattg tcttttatca tgtctaagca 3840 gatcaatatg tgcactgtga tgtccttcag atcactcatc actgtgatag gacccaggtc 3900 agtggatctt ggagccggat tcaaggaggc ggtgctgcga gcaatcactt cactcaaggt 3960 caaggccaag gacccgaaag gggccgagat agatggcccc tggcaagagc tactggtgga 4020 gattgccacc atgaccaaat cagcattcac cggcccgacc atcaagaaag acctagagca 4080 ggggaatgtc taccgatatg cgatgacagt gggcggcatg ttgagcacat cacacaatac 4140 taatggaaga ctgatgactg tcaggactgg acctctatat gatacagacc actatcatgt 4200 gtctggggag gttgatattg ataaaatgga tggtttcaaa gcaacgataa cactgtctgt 4260 ggccactgtc aaaagagaac gtcaacagtg cgaggcaggc atcggggaat accatgtttt 4320 accgatcaag gacaaaaatc ccccacgatc cgccagcaac accgcgggac ccagtggtta 4380 gagccatcaa cagctcaggg cctgctctcc ctcctatcag gcgtggatga ttacttaagg 4440 aggaagaagt ctcgactatc ttatgtttta aaggacggtg aatgaaacag ataaccatat 4500 gcatatctta atgatatgcc ctatataatc tgatttaaat aaaacaataa tgacagtaca 4560 aacgaaacag cccggcacga tgtcaacctt ctgctcttta accgtattaa tgtttcttct 4620 tatctcaggt tttgaggctt tgtccctggt cccaaagaca gtttgtgaaa aagaggtggg 4680 gctacatgtg gatgaatggc tccattcatg tttgggggcc tgcaagagca gcgataacga 4740 ccttgatatg acaccccaca tgttgatgga gcccacatta gagtacttta aggccttcgg 4800 gtacttcata catgtatcaa ccctcaccaa gtcgtcacat accttcctac tcggtgggtg 4860 tcacatcacc tcacaggaga cccccagcga ttctcaagag ctccccacta atatggctga 4920 gaatatattg aggcatggcg gccctgaggg agagataatt atgacaaaag agccccaatg 4980 cagcctctgg agtgacaatt atgtgaaagg catgcttgtg aagtatcaca gggtgatttt 5040 gactgtctca cacaccaaga gcgggataac ggttctttac gagcaggagg gagtgatagg 5100 ccatggcaag gtaggaaaaa ccacttcatc atcaggaacc cttgtgtggg acgtgagagc 5160 acaatacccg aagtgcaact atcgccctac aggggttctt agctgtaaga gagaagaatc 5220 atacatacgt tgcagaggta tgtcagagga gagaatttca tccatcacgg aggactgtgg 5280 agtcatcata ttaacgacag acacaaggaa catatatgga taccataaac atgatggagc 5340 attgactacc actcagacgg atgacaatca gataggtatg gtgaagaaga tcatcgagat 5400 agagaatctc atgtgtcatc atctatgtga gtcctcatct gaggaagggg gagtgacaca 5460 ccatgaatat ttggtctcca caccgatagg gccatggcta gccgtctcta cggagtccca 5520 tcgcactatg tttatgtgta cggatgagag tgcagtgtca ttggtggttc cagtggtatt 5580 gtgtggcaat gggcccttgg tgaaagtaag ggttaatgag agggagcaat ggtggaacat 5640 atcctctcca tatgttggta tggggactca ttgtgtcccg ggcctgtcta ctggattatc 5700 cactgttgat ggtgtgataa acacatggtt gggacaagtc accatagtga acggatcttt 5760 cactttcaag cgtgatttta tcaataagaa ctttcacggg gctttcaggc caagccagtt 5820 tagctggtct cacaagacag gcaatgatct tgaacacatc atagatgctc ttaacacaca 5880 ggagaaagtc ctaagccact ctcatgtgat agaatcacac agtgtggggg ccggggagaa 5940 tgctgtgcac tcgttcatcg gtatgttcac aactgtgttc gagtggatac aaagcctgat 6000 cccaaatgtc aaagggtgga taatcaggat cttcctgtgg gcactgttgg cagccctggt 6060 aatactgttg ctctggatat tgtggaaggt attatggttg ttcatcaaat ctgtgttcct 6120 aaggcggacc attcaggcag tcccaacatc ggagaactca gacacatcgc tgaatcgggc 6180 catccacaac tgggccaaga tggattaaca aggtcagtta gggacttttt atatatatac 6240 atatagctga taaatttaaa taaaactatc tcttgggggc cttttcctag ttagggatgt 6300 agggtaaagg accaatagag tcgcataaga gatcgtggcg ttcgtcaaca tcatcaacgt 6360 tggtcgatgc ggaatatgtt gactatttac aacagttact catggctcgg tgt 6413 //