ID AB516441; SV 1; linear; viral cRNA; STD; VRL; 6001 BP. XX AC AB516441; XX DT 15-AUG-2009 (Rel. 101, Created) DT 16-AUG-2009 (Rel. 101, Last updated, Version 2) XX DE Orchid fleck virus viral cRNA, segment RNA2, complete sequence, isolate: DE NHHS1. XX KW . XX OS Orchid fleck dichorhavirus OC Viruses; Riboviria; Negarnaviricota; Haploviricotina; Monjiviricetes; OC Mononegavirales; Rhabdoviridae; Dichorhavirus. XX RN [1] RP 1-6001 RA Kim S.R., Chung B.N., Choi G.S., Chang M.U., Choi J.K.; RT ; RL Submitted (11-AUG-2009) to the INSDC. RL Contact:Sung Ryul Kim National Institute of Horticultural & Herbal Science, RL Horticultural & Herbal Crop Environment Division; Kwonsun-gu Tap-dong, RL 540-41, Suwon 441-440, South Korea E-mail :chbn7567@korea.kr Phone RL :82-31-290-6236 XX RN [2] RA Kim S.R., Chung B.N., Choi G.S., Chang M.U., Choi J.K.; RT "Characterization and sequence analysis of Orchid fleck virus from RT cymbidium"; RL Unpublished. XX DR MD5; 9a4c1dd13617ff07a81b975c4562ca01. DR EuropePMC; PMC3735072; 23887919. XX FH Key Location/Qualifiers FH FT source 1..6001 FT /organism="Orchid fleck dichorhavirus" FT /segment="RNA2" FT /isolate="NHHS1" FT /mol_type="viral cRNA" FT /isolation_source="oriental cymbidium imported from China" FT /db_xref="taxon:152177" FT CDS 183..5816 FT /codon_start=1 FT /transl_table=1 FT /gene="L" FT /product="polymerase" FT /db_xref="GOA:C6L8Q4" FT /db_xref="InterPro:IPR014023" FT /db_xref="InterPro:IPR026890" FT /db_xref="InterPro:IPR039736" FT /db_xref="UniProtKB/TrEMBL:C6L8Q4" FT /protein_id="BAH97108.1" FT /translation="MNSLFQECYTESLMDDNTDTIITGKGRSAHNEGEYHLKSALRSHS FT DYVKNEHQAKDLLKLSEHTSVHAPKNPCKLLPTLWRGVIEGEEWVEDEVIIYLRELYHD FT DEADDCALELLGVELEHVCHDDDKTGIMQGVVQCQEDAWNKHTIYGRANILRWALTRIV FT IDHNKEEPTELSPMGRKLADKVFAYSLSSSLSMMTSRSWCHLMINDSPGTINIQHLINT FT LDKLTERVNIMTYLTLCNKTGLSSIYPSVDITLKIIKLGDNLILNEGNDAFRGLASYEA FT ICVGEIINRGDSSVWDVGRFLNTMLQEVGSLGENYKTWSSDVLVILQGLKIQQVSCLHG FT MYRIWGHPVVDLEKGLMKLRSVALMEKEIPPECARNTSNMFKEIFFTQYFRRHKFYPPH FT TWTGPEGSNYIKQVLSLEKELDTHNIRYHLEDWENIRCEKTFEIPATYSLASCIKDRAI FT SPKRSELVSMIIRGGSVMSQSSRRGVLKWLDSTMIPVREFLDGIDESGLSKDNSIIGLY FT PKERELKMEARFFALMSFQMRLYFTITEHMANDNLLDYFPMVTMSDSMLELNKKLDTLS FT RKQVTKKEGVVHYVVNIDFRKWNQQMREEMTVPMFLDADRLFGYTNLVGRTHEIFKSSY FT IYLSSGEYVPQVSLRGRLVHEEPYSWTNDPSGKEGLRQKYWTIMTACDLMYVARQHGLK FT IDLVGGGDNQVLIVEVTTDKVGDGGELTTEGKSECKFKMGTFMRHLSNYMEKKGLPLKT FT EETWISPNLLMFFKMMYYDHTTLVSPLKQASRVFPLSNDQVMTIGNMAATVSSGVTVLS FT SKDMQIGPAAAFGRLICADLASLVTKDHPLSDGGEMWSDSISICRGGSRRKVNVKPDLK FT TPMRIFLSLTLLHKVMGGPAIVSPLGMMMRGFPDPLCEHLTWISMIKSKFSQADNFACM FT SINTKVPWAHLLEDPVSVNHDAPMHGLAVLRREAEQALAKASGYKNRDFMDLARCCNKS FT QMEGLAEALCSGKNVDIRVLHDVMGASLGGYFNSIASKVNKTATVLRMNKSSSVIATIA FT GQERHCMSYFAASSSVPHDLTPLKCPTATARRYRRLSWGKEILSITTPHPAAFLKPVIG FT DHQCDHNYVQTKTSGGKLINPHSRGPYPVYMGSYTREKFKPTEMAAAYGEEDLLSRPIH FT LMKLINWRYSSSSNMARILKCLLSSLTDADATLFYGMMEWIAGDAEHRYQDMATKHGGV FT PNVAHSILSYVRAHTTTFRKHSRGGKNETLHFQAVMIYTSMIALFKKYGGIIHWHESCD FT ECIQQTVGNVDVVLTKRVEFPILKGNLFAYVPAESIKFHYHDMKRIRSVEDLGFRTVSY FT ESMSPLDRRTASISMLSAVISSSESRDKSSVTMSSIEMWAGTVNLTEIIPAVCLRVSVA FT ELMRTGEWSWPKPHLKKRIIMLLEPFIRSKLGRYQLLEMGVTLDELRSNNPGVLLDIVQ FT VVMDNSRMTPKIIPNRVSPSWVNDVICAKIYENEHVIFCSGCLTKGPCVDKVEICNDIL FT MEYTFKVCSATLPVLKGDMSQIICDRDFSNDPDWTSSPVQLFEMMDNPAAQFTPFPRDG FT PIAVSRPLGSAGLSSILDILAETNGIIMVGDDSVSITIWRQFRATRKVMIFKTGDNHLE FT AACDFICMAPDEADLLMDSESPDGKADVYYGDNIPIAPGWWIITSRKDVNRLYKYGKDM FT SPTRVLISKDRGQTRAICAVKMEQTPGQKWGDFQATYKKIEMRCGNYSGMVRNPTSKNK FT LISCAVSLFHRVNGDIEEAVKCCVTEMRTIFWRNELYTKKAKDLMYLMSTLHMAGMGGG FT IEFARRSIKPRAVRRPYRILIKTTARNNYKAANDVTDVRELFRVTPKPIGAPGGDIIIN FT IGK" XX SQ Sequence 6001 BP; 1764 A; 1294 C; 1518 G; 1425 T; 0 other; acacaggaca accaactgtc tcattgcgaa gtcaaattcc gtgatgggtc cgtctttcct 60 agaataaggg aaggatacta taggattgat cctagttctt ctctacgctg ggtgcttcac 120 ggatcataaa aaacaaccaa ccatcatata ttattacgca tacacttttg aactaatcag 180 atatgaattc actatttcag gaatgttaca ccgagtccct gatggacgat aatacggaca 240 ccatcatcac cggtaagggg aggtctgccc acaatgaggg agaataccac ctaaagtctg 300 ccctgagaag ccacagtgat tatgtgaaaa acgagcatca agccaaggat ctgctaaagc 360 tcagtgaaca tacatctgta catgcaccga aaaacccatg caagttactg cccactctat 420 ggagaggggt gattgaaggg gaggagtggg ttgaagatga ggttataata tacttgagag 480 agctctatca tgacgacgaa gcagacgact gtgctcttga gctccttggt gttgagctgg 540 aacatgtgtg tcatgacgat gacaaaacag ggataatgca gggagtcgta caatgtcagg 600 aggatgcatg gaacaaacat accatctacg gtagggccaa tatccttcga tgggccttga 660 caaggatagt gatcgatcac aataaagagg agcctacaga actcagcccc atggggagga 720 aattggccga taaggtgttt gcttattcac tgagcagctc attatctatg atgacaagca 780 gaagttggtg tcacctgatg attaatgaca gcccaggcac catcaacatc cagcacttga 840 tcaacaccct ggataaactg acggaacgag tgaacataat gacctaccta actctctgca 900 ataagactgg actttcaagc atttatccat cagtagacat cactttgaaa ataattaagc 960 tgggtgacaa cttaatatta aatgaaggca atgatgcttt ccgcgggttg gccagttacg 1020 aagccatctg tgtcggtgag ataatcaaca ggggcgattc gtctgtgtgg gatgttggta 1080 gattcctcaa cactatgtta caagaggttg gatcattggg agagaactac aagacatggt 1140 catctgatgt cctggtgata ctgcaaggtt tgaagatcca gcaagtgtca tgcctgcatg 1200 gcatgtatcg tatctgggga catccagttg ttgatcttga gaagggcctc atgaagcttc 1260 gttcagtagc tctaatggag aaggagatcc caccagaatg tgccaggaat acctccaata 1320 tgttcaagga gatattcttc acgcaatact tcagacgcca caagttctac cctccgcaca 1380 cctggaccgg tccggaagga agcaattaca tcaagcaggt cctatcactt gagaaagagt 1440 tggatacaca taacataaga taccacttgg aggattggga gaacatcaga tgtgagaaga 1500 cattcgagat tccggccaca tacagtcttg catcatgtat caaagacaga gccatatccc 1560 cgaagcggtc agagttagtg tccatgataa tcagaggggg atctgtaatg agtcaaagct 1620 caaggagggg ggttctgaaa tggctggata gtaccatgat tcctgtgaga gaattcttgg 1680 atggcataga tgaatcagga ttgtcaaaag acaactcaat catcggccta tacccaaagg 1740 aaagagagtt aaagatggag gccaggttct ttgctctaat gtcctttcaa atgaggttat 1800 actttacaat cacagagcat atggcaaatg acaatctctt ggactacttc cccatggtca 1860 caatgtctga cagcatgctg gagctaaaca agaagctgga cactctgagc cgaaaacagg 1920 ttactaagaa ggagggtgtg gtgcattatg tggtcaacat cgatttcaga aaatggaacc 1980 aacagatgag agaggagatg actgtcccca tgttccttga tgctgataga ctgtttggct 2040 acaccaatct ggtggggcgg acacatgaga ttttcaagtc ctcatatata tacttatcct 2100 caggggaata tgtaccacaa gtctcactca gaggaaggtt ggtgcatgag gagccctaca 2160 gttggaccaa tgacccttct gggaaagagg gcctgcggca gaaatattgg accatcatga 2220 ctgcgtgtga cttaatgtat gtagctagac aacatgggtt gaagattgat ctggtgggcg 2280 ggggagacaa tcaggtgctg attgtggagg tgaccaccga caaggttgga gatggaggtg 2340 aattaacaac ggaggggaaa tccgagtgca aattcaagat gggaacattc atgcgtcatc 2400 tgtccaatta catggagaag aaaggcctgc cgctaaagac agaggaaacc tggatctccc 2460 ccaacctgct tatgttcttc aagatgatgt attatgacca taccactctg gtgtcacctc 2520 tcaaacaggc ctcgagggtg tttccgttat ctaatgatca agtcatgact attggcaaca 2580 tggcagccac tgtgtcctca ggagtcacag tactatcctc caaggacatg cagattggcc 2640 cagcagctgc attcggaagg ctaatatgtg ccgacttagc atcattggtc accaaggatc 2700 atcccctgtc tgatggagga gagatgtggt cggacagcat aagcatttgc aggggtggct 2760 caagaaggaa ggtcaacgtt aagccggacc tcaaaacccc aatgagaatc ttcctgtcat 2820 taacactcct acataaagtc atgggaggtc cagccatagt atcacccctg ggtatgatga 2880 tgaggggatt tcctgatcca ctctgtgagc atttgacctg gatcagtatg attaagtcta 2940 aattctctca ggccgataac ttcgcttgta tgtctatcaa caccaaggtc ccttgggccc 3000 atctgcttga agacccggtt agtgtcaacc atgacgctcc catgcatggg ttggctgtac 3060 ttagaagaga agcagagcaa gctctcgcta aagcctctgg ctataagaat cgagatttta 3120 tggacctggc tcgctgttgc aacaagagtc aaatggaggg attggctgag gcactatgct 3180 ccggcaagaa tgtagatata agggtgttac atgatgttat gggtgcaagc ttaggagggt 3240 atttcaactc catagcctct aaggtaaaca agactgccac cgtcctaagg atgaacaaga 3300 gctcctctgt cattgccacc attgcaggac aggaaagaca ttgcatgagt tattttgctg 3360 cctcatcatc agtgcctcac gatctcactc ccctgaaatg tccaacagcc acagctagac 3420 gatacagaag actgagctgg ggcaaggaaa tcctgtccat cactaccccg catcctgcag 3480 ccttcttgaa accagtgata ggagaccatc agtgtgacca caactatgtg cagaccaaga 3540 catcaggagg gaaactgatc aatccccact ctagagggcc gtatccggtt tatatgggct 3600 catatacaag ggagaagttc aagcctactg agatggcggc ggcttacgga gaagaggacc 3660 tgctgtccag acccattcat ctgatgaagc taatcaattg gagatattca tcatcatcca 3720 acatggccag gatcctgaaa tgcctgctga gctctcttac tgatgctgat gccactcttt 3780 tctacggaat gatggagtgg attgcaggag atgcagagca tagatatcaa gacatggcga 3840 ccaaacacgg gggagttccc aatgtcgctc actccatact gtcttatgtc cgagctcaca 3900 ccaccacatt taggaaacac tcccgcggag ggaaaaatga gactctccac ttccaggccg 3960 ttatgatata tacatcaatg atagccctgt tcaagaaata tgggggaatc atccattggc 4020 atgagagctg tgatgaatgc atccagcaaa ctgtgggcaa cgttgatgtg gtactgacaa 4080 agagggtgga gttcccgatc ctgaaaggaa atctctttgc atatgtcccg gcggaaagta 4140 taaagtttca ctaccatgac atgaagagga ttcggtctgt ggaggatctg ggattccgta 4200 ctgtgtcata cgaatccatg agccccttgg atagaagaac tgccagcatc agcatgctgt 4260 ccgcagtgat atcgtccagt gagtctaggg ataaatcatc tgtaaccatg agtagcatag 4320 agatgtgggc cgggactgtc aatctcacag agatcatccc tgcagtatgc ctgagggtgt 4380 cggtggccga actcatgaga acgggcgaat ggtcatggcc caagcctcac ctcaagaaaa 4440 gaataatcat gctgctagag ccattcataa ggtcaaaact tgggaggtac cagctgttgg 4500 aaatgggtgt gaccctggat gaactacgat ccaacaaccc gggggtgctc ctagacattg 4560 ttcaggtggt tatggataac agcagaatga caccgaagat tatcccgaat agagtctctc 4620 ccagttgggt caatgacgtc atatgtgcta agatctatga gaatgagcat gtaatcttct 4680 gttccggatg tctgacaaaa ggcccatgtg tggataaagt ggagatatgc aatgacatcc 4740 tcatggaata caccttcaag gtgtgttcgg ctacattgcc ggtcctcaaa ggagacatgt 4800 ctcagattat atgtgatagg gatttctcga atgacccaga ttggacttca tcgcctgtcc 4860 agttgtttga aatgatggac aatccggctg ctcaattcac tccattccca agggacgggc 4920 ccatagcagt gtcaagacca ttgggcagtg ccggattgtc aagcatcctg gatatactgg 4980 cagagaccaa tggaatcatc atggtcgggg acgacagtgt cagcatcact atatggagac 5040 agtttagagc aaccaggaag gtgatgattt tcaagacagg tgataaccac cttgaagctg 5100 cctgtgactt tatatgtatg gccccggatg aagcggactt gctcatggat agtgaaagcc 5160 cggatgggaa ggctgacgta tattatgggg ataacattcc tatagcgccc ggttggtgga 5220 ttataactag caggaaagat gtcaacagat tgtacaaata tggaaaggac atgagcccca 5280 ccagggtact aatctccaag gatagaggtc aaaccagagc aatctgtgct gtcaagatgg 5340 aacagacccc gggccagaag tggggagatt ttcaggccac atacaagaag attgaaatga 5400 gatgcggaaa ctacagtggg atggtaagaa atcccacaag caagaacaag ttaatatcat 5460 gtgcggtgtc attattccac agggtcaatg gagatataga ggaggcagtc aaatgctgtg 5520 tgacggagat gaggacgatt ttctggagga acgaattata tactaagaaa gcaaaggatc 5580 tcatgtacct gatgtcaaca ttgcacatgg caggcatggg gggagggata gagtttgcaa 5640 gacgatctat caagcctaga gcagtgagac gaccttacag aatcctcatc aagactaccg 5700 ccagaaacaa ttacaaggct gccaatgatg tcacagacgt gagagagcta ttcagagtaa 5760 ctcccaagcc tatcggggca cccgggggag atatcatcat aaatatcggg aaataagtaa 5820 ttttgtttaa attatataca tttaaggaaa accgggtatc tcgggctccc ccccactatc 5880 gtatattttt gttcacaact gcgttaagaa ggactaggac taggtcccgg aggtgcaact 5940 gggtcacacc ggagtcgcaa ggagatttca tcaatccatg tactgttgat ctgtcctgtg 6000 t 6001 //