ID AB509459; SV 1; linear; genomic RNA; STD; VRL; 4107 BP. XX AC AB509459; XX DT 09-MAY-2010 (Rel. 104, Created) DT 09-MAY-2010 (Rel. 104, Last updated, Version 1) XX DE Sweet potato feathery mottle virus gene for polyprotein, P1, HC-Pro and P3 DE region, partial cds, isolate: 5-O. XX KW . XX OS Sweet potato feathery mottle virus OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-4107 RA Yamasaki S., Sakai J., Fuji S., Hanada K.; RT ; RL Submitted (19-JUN-2009) to the INSDC. RL Contact:Shuichi Yamasaki Oita Prefectural Agriculture, Forestry and RL Fisheries Research Center, Safety Farming Research institute; Kitausa 65, RL Usa, Oita 872-0103, Japan XX RN [2] RX DOI; 10.1007/s00705-010-0633-0. RX PUBMED; 20336334. RA Yamasaki S., Sakai J., Fuji S., Kamisoyama S., Emoto K., Ohshima K., RA Hanada K.; RT "Comparisons among isolates of Sweet potato feathery mottle virus using RT complete genomic RNA sequences"; RL Arch. Virol. 155(5):795-800(2010). XX DR MD5; 7e825c1e90d4799f2fe3cf8afa31be86. XX FH Key Location/Qualifiers FH FT source 1..4107 FT /organism="Sweet potato feathery mottle virus" FT /strain="O" FT /isolate="5-O" FT /mol_type="genomic RNA" FT /db_xref="taxon:12844" FT 5'UTR 1..117 FT CDS 118..>4107 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:D5MRC7" FT /db_xref="InterPro:IPR001456" FT /db_xref="InterPro:IPR002540" FT /db_xref="InterPro:IPR031159" FT /db_xref="InterPro:IPR039560" FT /db_xref="InterPro:IPR042308" FT /db_xref="UniProtKB/TrEMBL:D5MRC7" FT /protein_id="BAJ07200.1" FT /translation="MATVMAFVKPAGKRKLTWKECCNKWGKAAMEQQQQQQSKKTVHLG FT RDHLAAYLLAFVPDTEWHKYYYGNRGGPSPALLILKGAIEYGEVYKWESELTFCAECDD FT VLDGHKCDSCGHRYIRRDDNIADSMNDIARALGGYDAYYASNWAVYETAKYELNQVAPT FT AGMLYKQAKEAEKLLGKRPTRREIQEVEDLWAEYEEAAVKEAAEASEASNEYATSEVAN FT KNAYLSDEEDDEAFPPLVVTIEKVASATNIMESAPEESKTTEIQEPPVHTPKVSVATTF FT VEATNNGEDEQLPTQEQVTKNANCSAADPITLGDVSIGDIQFGTISCVLGQIKVQETET FT AKESTTGFFFGTIPAIIPLPTIPIMKLESAIVEPIATPVVEVTSNEIVEVPIAAPTEME FT KAPKVPLPKHLYPWTSKTQTPGEVHHKMVRKWVQKIQQAAAEKEKLVWKKLDEQLAARN FT EARKDLKVKWRWGLYRLVRKTRKDNQRKRRQKRMEKEQQLLTAMPPQILTSISIAGGPA FT ASLEMTPTLNGKIFCTPSMKKKRTLKSPTLTQEKIHELMQAVLKIACKKEMNVELVGKK FT LTRGQYKKFQGAKHLFLHLKHMKGLRESVDLRVHPTTQNTVLQAAKVGAWEKSIKTVTL FT SKGSSGLVMNPDRLLGPRGHAPQGMFVVRGAFKGVLYDARMKLGRSVLPYITQFSSTME FT RFLSGFDSKFKQMRQIDADHVCESSYDAEQAGSVAAITHHMLYPMGRTTCKSCINNIED FT MSREEWCEYVKSFINKNKILCQFNYKDFVHLPQIMDFLSESLVNTNKNVKAFNEIQSLI FT GDRNDAPFANVCEINKVLVKGGRAKSDELIRASENLLELARYLKNRTENIKKGSLQSFR FT NKISQKSSVNLALMCDNQLDKNGNLIWGERGYHSKRFFANYFDIIDPSQGYEKYVRREN FT PNGSRKLAIGKLIVSTNFSVFREQMKGEPIQKQKLDNHCTSLRDGNFVYPCCCVTLDDG FT QPIESEFKLPTKNHLVIGNSGDPKYVDMPPEISKKMYIAKDGYCYVNIFLAMLVNVNEA FT EAKDFTKQVRDVLMEKLGKWPTMFDVATACAFMSVFYPETRNAELPRILVDHTTKTMHV FT VDSFGSLSTGYHILKANTVSQLIQFASSSLESEMKHYIVGGVTALPDIQERCIRTIIKG FT VYKPDVMYTILSEDPYALLLSVMSPRILLALLNSGSLDRSMEAWITEDQEVAVIIGTLQ FT ELAKKVSTSRVLEKQLKVIESQAHTLLFDPSLVRSRTPGFALSQRIIRGLAERRESNRV FT LYEQGHSVASYAASHELMEKIWDRLLKEEYEGLPWHGKCAQIMRSS" FT mat_peptide 118..2184 FT /gene="P1" FT mat_peptide 2185..3558 FT /gene="HC-Pro" FT /note="a protein with helper component activity and FT proteolytic activity" FT mat_peptide 3559..>4107 FT /gene="P3" XX SQ Sequence 4107 BP; 1354 A; 808 C; 963 G; 982 T; 0 other; aaaaataaca caacacaata caacacaaga aaactcaatc cagcataact tgcgatccac 60 ttactattag caactttcag taaattgcaa tcaagtccta gttctcgcga ttttgaaatg 120 gcaaccgtga tggcatttgt gaaaccggct ggtaagcgaa agcttacatg gaaggaatgc 180 tgcaacaagt gggggaaagc tgcaatggaa cagcagcaac agcaacagtc taagaagact 240 gttcacttgg gacgtgacca tctggctgcg taccttcttg catttgtgcc agatactgaa 300 tggcataaat actattacgg caaccgtggg ggaccatctc ctgcattgct tattctgaag 360 ggcgctattg agtacggtga agtatataag tgggaatctg aactcacttt ctgtgctgaa 420 tgtgatgatg tcctggatgg acacaagtgt gacagctgcg gacaccgcta cattagacgt 480 gatgacaata ttgcggatag catgaacgac attgctagag cgttaggagg gtatgatgca 540 tactatgcat ccaactgggc agtgtatgaa actgccaaat atgagcttaa tcaagtcgca 600 cccacagctg gcatgctgta caagcaggcc aaggaggctg agaaattgtt gggaaagcgc 660 ccaacaagac gggagattca agaggttgag gacctctggg ctgaatatga ggaagccgct 720 gtaaaggagg cagctgaggc gtctgaggcc tcaaatgaat atgccacatc tgaggtagca 780 aataagaacg catacctcag tgatgaagag gatgatgagg cattcccacc tcttgtggtt 840 actattgaaa aggtggcatc tgccacaaat atcatggaat ctgctccaga agagagcaaa 900 accactgaga ttcaggaacc tcctgtgcat acgccaaaag tatcagtagc aaccacattt 960 gtggaggcta ctaacaacgg agaagatgaa caacttccaa cccaggagca agtcacaaag 1020 aatgctaatt gctcggcagc cgaccctatt actcttgggg acgtgtcaat tggagacatc 1080 caattcggca caatttcttg cgtattagga caaattaaag tccaagagac tgagactgct 1140 aaggagtcaa ccactggctt cttctttgga accatccctg ctatcattcc actcccaact 1200 attccaatca tgaaattgga atcagctatt gttgaaccta ttgccacacc cgtggtggag 1260 gttacaagta acgaaattgt ggaagtcccg attgcagctc ccactgagat ggaaaaggca 1320 ccgaaagtac cattaccaaa acatttatac ccttggacat ctaaaactca aacacctggt 1380 gaagtgcacc acaagatggt gcgtaaatgg gttcagaaaa ttcaacaagc cgcagcggag 1440 aaagaaaaac tcgtctggaa aaaactggac gaacaattgg ctgcaaggaa cgaggccaga 1500 aaggacctca aagtgaaatg gaggtggggg ctctacagac tagtcagaaa gaccaggaaa 1560 gacaaccaaa gaaagcgccg acaaaagcgc atggagaagg aacaacaatt actgacggcc 1620 atgccacctc aaattctgac gagtatctcc atcgctgggg gtcctgcagc gagtctggaa 1680 atgactccaa ctctgaatgg gaagattttc tgcacgcctt ctatgaagaa gaagagaact 1740 ttaaaatctc ccacgctaac acaagagaaa atccacgagc tcatgcaagc agtcctgaaa 1800 atagcttgca aaaaggagat gaatgtagag ctggtgggca agaaactcac aagaggccaa 1860 tacaagaaat ttcaaggagc aaagcatttg ttccttcatt taaaacatat gaaaggcctc 1920 agagaatcag tggatttaag agtccaccca acaactcaaa ataccgtact gcaagccgcc 1980 aaggttgggg catgggagaa gtcaataaag acagtaacat tatccaaagg ttcaagtggt 2040 ctagttatga acccagacag gctgctgggt cctcggggtc acgcaccaca aggaatgttc 2100 gtggtacgtg gggctttcaa aggagtgtta tacgacgcac ggatgaagct tggtaggtct 2160 gtcctaccat atatcactca gtttagctcc accatggaaa ggtttctgtc aggctttgat 2220 agcaagttta aacagatgag gcagatagat gcggaccacg tgtgtgaatc aagttatgat 2280 gctgagcagg caggatctgt agcagccata acacatcaca tgctctatcc aatgggaaga 2340 actacttgta aatcgtgtat aaataatata gaagacatga gtagagagga gtggtgtgaa 2400 tacgttaagt cttttatcaa taaaaataaa atattgtgtc agtttaatta taaagatttt 2460 gtacatttgc ctcaaataat ggactttcta tctgaatcac ttgtaaatac aaataaaaac 2520 gtaaaggcgt tcaatgaaat tcaaagcctc attggcgata gaaatgacgc accttttgca 2580 aatgtttgtg agataaataa agtattagta aaaggcggtc gtgctaaatc cgatgagcta 2640 atcagagcat ctgaaaatct tttggaattg gctcgttatt tgaaaaaccg cactgagaac 2700 attaagaaag gctcactgca atcttttagg aataaaatat cacagaaatc ttcagtgaat 2760 ttagcattaa tgtgtgataa tcagctggac aaaaatggta acctaatctg gggtgagcga 2820 ggttatcatt cgaagagatt cttcgcaaat tattttgaca taattgatcc ttctcagggg 2880 tatgagaagt acgtgaggag agaaaaccca aatggctcac gaaagttagc aattgggaaa 2940 cttatagttt ccacgaactt ttctgtgttt agagagcaaa tgaaagggga acctattcag 3000 aaacaaaaac tcgacaacca ttgcacgagc ttgcgtgacg gaaattttgt gtatccatgt 3060 tgttgtgtaa cactggatga tgggcaacct attgagtcag agtttaaatt accaacaaag 3120 aaccacttag tgattggaaa ctcaggggat ccaaagtacg tcgacatgcc gccagagata 3180 agcaagaaga tgtatattgc gaaggatgga tattgttatg tgaatatctt tttggctatg 3240 ttggtcaatg tcaatgaggc agaggcaaag gatttcacaa aacaagtgcg agatgttcta 3300 atggagaagc ttggaaagtg gccaacaatg tttgatgtag ccacagcatg tgcatttatg 3360 tcagttttct atcccgagac gcggaatgca gaactcccaa gaatcttagt tgatcacaca 3420 acaaagacta tgcacgttgt agattctttt ggctcattga gtacaggata tcatatccta 3480 aaagcaaaca cagtgagcca attaattcaa tttgcaagta gttctctgga atctgaaatg 3540 aagcactaca tagttggtgg tgttacagca ctaccagata ttcaagagag atgcatcaga 3600 acgattataa aaggagtgta caaaccagac gttatgtata ctattctatc tgaggacccg 3660 tacgcgctct tgttaagtgt gatgtcaccg cgcatactct tagccttact taacagcggg 3720 tcactggata ggtcaatgga agcatggata acagaagatc aggaagttgc tgtgatcata 3780 ggtacactac aggagcttgc aaagaaggta tctacttcta gggtactcga gaagcaactt 3840 aaagtaatag agagtcaagc acacactcta ttatttgatc catcgcttgt gcgcagtaga 3900 accccaggct ttgcactttc acagagaatc attagaggcc tagcggaaag aagagaatca 3960 aatagagtgc tatatgaaca agggcattca gttgcgtctt acgcagcctc gcatgagctc 4020 atggaaaaaa tttgggatcg tcttttaaag gaggaatacg aaggactgcc ctggcatgga 4080 aaatgtgcac aaatcatgcg atcatca 4107 //