ID AB509457; SV 1; linear; genomic RNA; STD; VRL; 4005 BP. XX AC AB509457; XX DT 09-MAY-2010 (Rel. 104, Created) DT 09-MAY-2010 (Rel. 104, Last updated, Version 1) XX DE Sweet potato feathery mottle virus gene for polyprotein, P1, HC-Pro and P3 DE region, partial cds, isolate: 19-S. XX KW . XX OS Sweet potato feathery mottle virus OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-4005 RA Yamasaki S., Sakai J., Fuji S., Hanada K.; RT ; RL Submitted (19-JUN-2009) to the INSDC. RL Contact:Shuichi Yamasaki Oita Prefectural Agriculture, Forestry and RL Fisheries Research Center, Safety Farming Research institute; Kitausa 65, RL Usa, Oita 872-0103, Japan XX RN [2] RX DOI; 10.1007/s00705-010-0633-0. RX PUBMED; 20336334. RA Yamasaki S., Sakai J., Fuji S., Kamisoyama S., Emoto K., Ohshima K., RA Hanada K.; RT "Comparisons among isolates of Sweet potato feathery mottle virus using RT complete genomic RNA sequences"; RL Arch. Virol. 155(5):795-800(2010). XX DR MD5; f3305c528bc16a4d4d27eb931cfce59e. XX FH Key Location/Qualifiers FH FT source 1..4005 FT /organism="Sweet potato feathery mottle virus" FT /strain="RC" FT /isolate="19-S" FT /mol_type="genomic RNA" FT /db_xref="taxon:12844" FT 5'UTR 1..117 FT CDS 118..>4005 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:D5MRC5" FT /db_xref="InterPro:IPR001456" FT /db_xref="InterPro:IPR002540" FT /db_xref="InterPro:IPR031159" FT /db_xref="InterPro:IPR039560" FT /db_xref="InterPro:IPR042308" FT /db_xref="UniProtKB/TrEMBL:D5MRC5" FT /protein_id="BAJ07198.1" FT /translation="MATVMASAKPAGKRKLTWKECCNKWGRAAMEQQQQQQSKKTVHLG FT RDHLAAYLLAFVPETEWHKYYYGSRGGPSPALLILKGAIEHGEVYKWESELTFCAECDD FT VLDGHNCDSCGHRHIKRDDNIADNMNAIARALGGYDAYYASNWAVYETAKYELDQVAPT FT AGMLYKQAKEAEKLLGKRPTRREIQEVEDLWAEYEEAAAREAAEASEASNGYATSEVAN FT KNAYLSDGEDDEAFPPLVVTAEKVVPATTIIESTPEVGKTIEVQTPLEPVPEVLAATTF FT VEATIEGKDAPTSSIQFGTIVCALEPTKASEAEIAKEPTTGFFFGTIPAIVPLPTIPLL FT KLESTIVEPIATPMVEVTSSEIVKVPIATPTEVEKASKAPLPKHLYPWTAKTQIPGEVH FT HKMVRKWVQKTQHAATEKEKLVWKKLDEQLATRNEIRKDLKVKWRWGLYRLVKKTRKDN FT QRQRRQRRMAKEQQLLMAMPPQVLTGISIAGGPSASLEMTPTPNGKIFCTPSMKKKKTL FT KSPKLTQEKIHELTQAVLKIACRKRMSIELVDKKSTKGQYKKFQGANYLFLHLKHMEGL FT RESVDLRIHTTTQNLVLQAAKVGAWKRTVKTTMLSKGSSGLVLNPDKLLGPRGHAPHGM FT LVVRGALRGVLYDARMKLGRSVLPYIIQYSSTMERFLSGFDNKFKQMRQTDLNHVCESS FT YDAEQAGSVAAISHHMLYPMGRTTCKFCINNVEDMSRDEWCEYVRSFISRNKTLCQSEY FT KNFVHLPQIMDFLSDSLVNTNKNLKAFNEIQNLIGDRTDAPFTSVCEVNKVLVKGGRAK FT PDELIKASENLLEVARYLKNRTENIKKGSLQSFRNKISQKSSVNLALMCDNQLDKNGNL FT IWGERGYHSKRFFANYFDVIDPSQGYEKYVIRENPNGSRKLAIGKLIVSTNFSVFREQM FT KGEPIQKQKLDNHCTSLRDGNFVYPCCCVTLDDGQPLESEFKLPTKNHLVIGNSGDPKY FT VDMPPEISKKMYIAKDGYCYVNIFLAMLVNVNEAEAKDFTKQVRDVLMEKLGKWPTMFD FT VATACAFMSVFYPETRNAELPRILVDHSTKTMHVVDSFGSLSTGYHVLKANTVSQLIQF FT SSSSLESEMKHYIVGGVTALPDVQERCIRTIIKGVYKPDVMYTILSEDPYALLLSVMSP FT RILLALLNSGSLDRSMEAWITEDQEVAVIIGTLQELAKKVSTSRVLEKQLKVIESQAHT FT LLFDPAFVRSRTPSFALSQKIIRGLAEGRESNRVLYEQGHSIASYAASHELMEKIWDRL FT LKEEYEGLPWHG" FT mat_peptide 118..2109 FT /gene="P1" FT mat_peptide 2110..3483 FT /gene="HC-Pro" FT /note="a protein with helper component activity and FT proteolytic activity" FT mat_peptide 3484..>4005 FT /gene="P3" XX SQ Sequence 4005 BP; 1310 A; 791 C; 927 G; 977 T; 0 other; aaaaataaca caacacaata caacacaaca aaactcaatc caacacaatt tgcaatctac 60 ctgctattag aaaatttcag tcaactacaa tcacttctga gtcttcacaa ttctgaaatg 120 gcaactgtaa tggcatctgc gaaaccggct ggtaagcgaa agcttacgtg gaaggagtgc 180 tgcaacaagt gggggagagc tgcaatggaa cagcagcaac agcagcagtc taagaagact 240 gtacacttgg ggcgcgacca tctggccgca tatctccttg cgtttgtgcc agaaactgaa 300 tggcacaaat attattatgg cagtcgtgga ggaccatccc ctgctctgct cattttgaag 360 ggcgccattg aacatggcga agtttacaag tgggagtctg agctcacttt ttgtgctgaa 420 tgtgatgatg tcctggatgg acataattgt gatagctgtg gacaccgcca cattaaacgc 480 gatgataaca tcgcagataa catgaacgcc attgctaggg cgttgggagg gtacgatgca 540 tactatgcat ctaactgggc agtatatgaa actgccaagt atgagcttga ccaagtcgca 600 cctacagctg gtatgcttta caagcaggcc aaggaggctg agaaattgtt ggggaaacgc 660 ccaacaagac gggagattca ggaggttgag gacctctggg ctgagtatga ggaagctgct 720 gcaagggagg cagctgaggc gtctgaggcc tcaaatggat atgccacatc tgaggtggca 780 aataagaatg cgtaccttag tgatggagag gatgatgagg cattcccacc tcttgtggtg 840 actgccgaga aggttgtgcc tgccacaacc attattgaat cgactccaga agtgggtaag 900 actattgagg ttcagacacc tcttgaacct gtgccggaag tattagcagc aaccacattt 960 gtggaggcaa ctattgaagg aaaagatgca ccaactagta gcatccaatt cggcacaatc 1020 gtttgcgcat tggaaccaac taaggcctcg gaagctgaaa tcgccaagga accaaccact 1080 ggtttcttct ttggtactat ccctgctatc gtcccacttc caactattcc actcctcaag 1140 ttagaatcta ctattgtaga acctattgcc acacctatgg tggaggtcac aagtagtgaa 1200 attgtaaaag tcccgatcgc aacccccact gaggtggaaa aggcatccaa ggcaccatta 1260 ccaaaacatt tatacccttg gacagctaaa actcaaatac ctggcgaggt gcaccacaag 1320 atggtgcgta aatgggttca gaaaacccag catgctgcaa cggagaagga aaaacttgtt 1380 tggaaaaaac tggacgaaca attggccaca aggaacgaga tcagaaaaga tctcaaagta 1440 aaatggaggt ggggactcta cagactagtc aagaaaacca ggaaggacaa ccaaagacag 1500 cgccgacaga ggcgcatggc gaaggaacag caattattga tggctatgcc acctcaagtt 1560 ctgacgggca tctccattgc tgggggtcca tcggcgagtc tggaaatgac tccaactccg 1620 aatgggaaga ttttctgcac gccttccatg aagaagaaga aaactttaaa atctcccaaa 1680 ttaacacaag agaaaattca cgagctcacg caggcagttc tgaaaattgc gtgcagaaaa 1740 aggatgagca tagaattggt ggacaagaag tccacaaaag ggcagtacaa gaaatttcaa 1800 ggagcaaatt atttgttcct tcatttaaaa catatggaag gcttaagaga gtcagtggat 1860 ttaagaattc acacaacaac tcaaaacctt gtacttcaag ctgccaaggt tggggcatgg 1920 aaaagaactg taaagacaac aatgttgtcc aaaggttcaa gtggcctggt gttgaatcca 1980 gacaaactgt tgggcccaag aggtcatgca ccacacggaa tgctcgtggt gcgtggggct 2040 ttacgaggag tgctatacga cgcacgaatg aaacttggta gatctgttct accatacatc 2100 atccagtata gctctactat ggaaagattt ctgtcaggct ttgataataa atttaaacaa 2160 atgagacaga cagatctgaa ccacgtatgt gaatcgagtt atgatgctga gcaagcagga 2220 tctgtagctg caatttcaca tcatatgctc tatccgatgg gaagaaccac ttgtaaattt 2280 tgtataaata atgtagaaga tatgagtaga gacgagtggt gtgaatatgt tagatctttc 2340 atcagtagga ataaaacatt atgtcagtct gaatataaga attttgtaca tttacctcaa 2400 ataatggatt ttctatctga ttcacttgtg aatacaaata aaaacctgaa agcatttaat 2460 gaaatccaga acctcattgg cgataggact gatgcgccat tcacaagtgt gtgtgaggtt 2520 aataaagtat tggtcaaagg cggtcgagct aaacctgacg agctaattaa agcatcagaa 2580 aaccttttgg aagtggctcg atatttgaaa aaccgcaccg agaacatcaa gaaaggttca 2640 ctacagtctt ttaggaataa gatatcacag aaatcatcag tgaatctagc cttaatgtgt 2700 gacaatcaac tggacaagaa tggcaattta atatggggtg aacggggcta tcactcaaaa 2760 agattctttg ccaactattt tgatgttatt gacccatctc aagggtatga gaaatatgtg 2820 attagagaga atccaaatgg atctcggaag ttggcaattg gaaagttgat agtgtccact 2880 aacttttctg tattcaggga gcaaatgaaa ggcgagccca ttcagaaaca aaaactagac 2940 aatcattgca ctagcctgcg cgatggaaat ttcgtatacc catgttgttg tgtgacactt 3000 gatgatggac agcctcttga atcagaattt aagttaccaa cgaagaatca cttggtaatt 3060 ggaaattcag gagatcccaa atatgttgac atgccaccag agattagcaa gaaaatgtac 3120 attgcaaagg atggttattg ttatgtaaac atctttctag ctatgcttgt taatgtaaac 3180 gaagccgagg ctaaagattt cactaaacaa gtgcgagatg tgttgatgga aaaattgggc 3240 aaatggccaa caatgtttga cgtagccact gcatgtgcat tcatgtcagt attctatcct 3300 gaaacaagaa atgctgaact tccaagaatt ctagttgatc actcaactaa aactatgcat 3360 gttgtggact cttttggctc attaagcaca ggatatcatg tcctgaaagc aaacacagtg 3420 agtcaattaa ttcagttctc aagtagctct ctggagtctg agatgaaaca ctacatagta 3480 ggcggtgtta cagcattgcc agatgtccaa gaaaggtgca tcagaacaat tataaaagga 3540 gtatacaaac cagatgttat gtatactatt ctatctgagg atccatatgc actcttatta 3600 agtgtgatgt caccacgcat actcttagcc ttactcaaca gcggatcact ggatagatca 3660 atggaagcat ggataacgga agaccaggaa gttgctgtaa tcataggtac actacaggag 3720 cttgcaaaga aggtatctac ttctagggta ctcgaaaagc aacttaaagt gatagagagt 3780 caagcacaca ctctattatt tgatccagcg tttgtgcgca gtagaacccc aagctttgca 3840 ctctcacaga aaatcattag aggcctagca gagggaagag aatcaaatag agtgctctat 3900 gaacaaggac attcaattgc gtcttatgca gcctcgcatg agcttatgga aaaaatttgg 3960 gatcgtcttt taaaggagga atacgaagga ctgccttggc atgga 4005 //