ID AB491171; SV 1; linear; genomic RNA; STD; VRL; 3133 BP. XX AC AB491171; XX DT 11-MAR-2013 (Rel. 116, Created) DT 11-MAR-2013 (Rel. 116, Last updated, Version 1) XX DE Potato mop-top virus genomic RNA, segment RNA 2, complete sequence, DE isolate: Hiroshima. XX KW . XX OS Potato mop-top virus OC Viruses; Riboviria; Virgaviridae; Pomovirus. XX RN [1] RP 1-3133 RA Hataya T.; RT ; RL Submitted (16-MAR-2009) to the INSDC. RL Contact:Tatsuji Hataya Hokkaido University, Research Faculty of RL Agriculture; Kita-ku, Kita 9, Nishi 9, Sapporo, Hokkaido 060-8589, Japan XX RN [2] RA Hataya T., Nakayama T., Maoka T.; RT "Molecular detection and characterization of Japanese Potato mop-top virus RT isolates in potato tubers and soil by reverse transcription-polymerase RT chain reaction followed by microplate hybridization"; RL Unpublished. XX DR MD5; 519f5b76e8b13ad679c3ea8c14e5e449. XX FH Key Location/Qualifiers FH FT source 1..3133 FT /organism="Potato mop-top virus" FT /segment="RNA 2" FT /host="Solanum tuberosum" FT /lab_host="Nicotiana benthamiana" FT /isolate="Hiroshima (H)" FT /mol_type="genomic RNA" FT /country="Japan:Hiroshima" FT /collection_date="1980" FT /note="Complete sequence of RNA 2 of PMTV-H" FT /db_xref="taxon:37128" FT CDS 314..2791 FT /codon_start=1 FT /transl_table=1 FT /transl_except=(pos:842..844,aa:OTHER) FT /product="readthrough protein" FT /note="readthrough amber stop codon" FT /db_xref="GOA:M4ZI03" FT /db_xref="InterPro:IPR001337" FT /db_xref="UniProtKB/TrEMBL:M4ZI03" FT /protein_id="BAM95900.1" FT /translation="MAENRGERRAAVENRYDSWDHEQAMKAAVRKFISYDQFSAQLRNW FT REARLNIIEHATSVLSQVSNLGRTHFYSRTERFGGSSLVGDKLYVCLNETRMKTALNNI FT IVALQTVNGEGRARRLGPREASANTGGEDSALNVAHQLAEVDDLLTDESFLREAVFTQD FT KYELVNGLRWAGAXQLTAQAFWFDVNAAIDEIDNRLLAAAALRLLPGQANHVDGLVSIN FT YAQLDRALSVVGGNILPQTLEITRDERKRQLPEVRVIDGERVTIRNKDEATVIRNHGQG FT LPWLLAFLLLLLSVVVVYSTIYLNDWLYRLSVVRHGKPGGGAARKLSGMSDWLCSRLRA FT RGALNVSRMRKKQACDPSPTGLRKFLTCYNFSYELWDPTGSYDDAQRRIIAEQNSFVEA FT VRAIDEGDRELAEACLTNVRRILRRHLNYRPDYFDIIEAKAVYLVTVLTNAMSGPVVGV FT DDDERRAVVAAFNPSDCGLPNLDSCSLDEIKNFDLSEVAIGEGTNVEQARGYLNLCRNI FT QCMIETIGTVQFLGVLSSYTGPQYPCISQAFAEDKRIRKERLKDKDNITTADIIAYLVS FT GVMAAYALVAVSKGGITLFKFMKNYAGGGGDGPGSSRRIRQLEAALPSVPQPEELTMME FT RLRRLQSSDNDLVLRRNPSDMLSQVVRDVVADVDSSDIAEFLNDPARMTEAALELRLTR FT IMSAEGSPVDVIEPGGQELISMQVHGESLTVINAGTDSPTVIRSASLSTRHRSSGIEIG FT SFAVDKVLPYEVEGENDDHGDAGKKPTVAQALMIGGGAVKGQGNLGVTNGKEFLKVLGS FT SRSIGKMSGKMAV" FT CDS 314..844 FT /codon_start=1 FT /transl_table=1 FT /gene="cp" FT /product="coat protein" FT /db_xref="GOA:M4ZHH4" FT /db_xref="InterPro:IPR001337" FT /db_xref="UniProtKB/TrEMBL:M4ZHH4" FT /protein_id="BAM95901.1" FT /translation="MAENRGERRAAVENRYDSWDHEQAMKAAVRKFISYDQFSAQLRNW FT REARLNIIEHATSVLSQVSNLGRTHFYSRTERFGGSSLVGDKLYVCLNETRMKTALNNI FT IVALQTVNGEGRARRLGPREASANTGGEDSALNVAHQLAEVDDLLTDESFLREAVFTQD FT KYELVNGLRWAGA" XX SQ Sequence 3133 BP; 834 A; 573 C; 875 G; 851 T; 0 other; gtatttttta agtctaaaca gtttgtgact aactagacga aaaacatatc aactttcttg 60 cagagctttt agtaatacga ccaggtgttg gttgctatta agagctgcat taaagtgttt 120 tcttgtgtct tttgcgggtg ggctacaggc gagcagtccg tataaaggca tctgaaagcg 180 acggcgatca caaaggcgcg agtggaaatt cttttgtgtt agcggtttga aaattttatt 240 ttcttactgt gtttgttgtt ctataattct cggagatctg gaatcagagg aggtttgttt 300 accacccttg gaaatggctg aaaacagagg tgagcgaaga gcagccgtcg agaatagata 360 tgactcttgg gaccatgagc aggccatgaa ggctgccgtg aggaagttta tttcttacga 420 tcaattctca gctcagttaa gaaactggcg cgaagctagg ttaaacataa ttgaacatgc 480 cactagcgtg ttgagccagg tgtctaattt aggtagaact catttctaca gtagaaccga 540 acgctttggt ggaagttcac ttgttggtga taaattgtac gtatgtctga atgaaaccag 600 aatgaaaacc gcgttgaata atataattgt agcgttgcag acagtgaacg gcgaagggcg 660 ggcaagacga ttaggtccga gagaagcttc cgcgaacacc ggcggggagg atagcgctct 720 gaatgtggca catcaactcg cagaggtgga cgatttatta actgatgaaa gttttttaag 780 agaagctgtt tttactcagg acaaatatga gctcgtgaac gggttacgct gggctggtgc 840 atagcaatta accgctcagg ctttttggtt tgacgtcaac gccgctatcg acgaaattga 900 taatcgactg ctggcggcgg ctgcgttaag actattgcct gggcaggcaa atcacgtgga 960 tggtttagtg tctataaatt acgcacaatt ggatagagca ttgagtgttg ttggtgggaa 1020 tattttacct cagacgttgg agataactcg tgacgaaaga aaaaggcaat tacctgaggt 1080 cagagttatc gacggcgagc gtgtcactat tcgtaacaag gatgaggcga cggtcattag 1140 gaatcatggt cagggacttc cttggctatt agcgttttta ctgttgctgt tatctgttgt 1200 agtggtgtat tctacaatat acctgaacga ctggttgtat cggttaagtg tggtaaggca 1260 tgggaaacct ggcggtggtg cagctcgtaa gctgtcgggt atgtcggact ggttgtgcag 1320 tcgcttaagg gccagaggcg ctttgaatgt gagtaggatg aggaagaaac aagcatgcga 1380 tccgtcgccc actgggttgc ggaagttcct tacttgttat aacttttctt atgaactttg 1440 ggatcctact ggtagttatg acgatgcgca gcggagaatt atagcggaac agaattcgtt 1500 tgtggaagcc gtgagggcca tagatgaagg tgacagggag ttggctgagg cgtgtttgac 1560 taatgttaga cggatcctca ggagacatct taattaccga cctgattatt ttgatattat 1620 tgaagcgaag gcggtatatt tggtgacagt gctgacaaac gcaatgtcgg ggccagttgt 1680 tggcgttgac gatgacgagc ggagagcggt ggtagccgcg tttaatccgt cagactgtgg 1740 gttaccgaat ttggatagtt gctctttgga cgaaattaag aattttgatt tgtccgaagt 1800 ggcgatcggt gagggtacca atgttgaaca agcaagaggg tatcttaatc tttgtagaaa 1860 tattcagtgt atgattgaga caattggcac cgtccaattt cttggtgtgt tgtcgtcgta 1920 tacaggtcct cagtatcctt gtatatccca agcttttgct gaagataaga ggataagaaa 1980 agaaaggctg aaagataagg acaatataac gacagcagat attattgcct atttggtgag 2040 tggggtgatg gcagcctacg ctcttgtggc ggtaagtaaa ggagggatca cactgtttaa 2100 gtttatgaag aactatgcgg gtggaggtgg tgacgggcct ggttcaagca gaagaataag 2160 acagttagag gccgctttgc cctccgttcc gcagccagaa gaactgacca tgatggaacg 2220 tttgagaaga cttcaatctt ccgataacga tttagttttg agaaggaacc cgtccgatat 2280 gcttagtcag gtcgtacgtg acgttgtagc cgatgtagac tccagcgata ttgctgagtt 2340 tttgaatgat cctgctagga tgaccgaagc ggctctggag ctccgattga ccagaataat 2400 gagtgctgaa ggttcaccgg tggatgtaat tgagccaggg ggccaggaac ttatttccat 2460 gcaagtgcat ggagaaagtc taaccgtcat aaatgccggc accgactctc ccacagtgat 2520 cagatccgcg tccttgtcga cgcggcaccg tagttctggt atagaaatcg gttcttttgc 2580 agtggataaa gtgctgcctt acgaggtgga aggcgaaaac gacgatcacg gtgacgccgg 2640 taagaagccc actgtcgccc aagctttgat gattgggggt ggtgcggtta agggacaggg 2700 taatctgggt gttactaatg gcaaagaatt cttgaaggta ttaggtagct ctcgatctat 2760 agggaagatg tcaggtaaga tggctgttta aaccgagtgc gtgtgacggg tttacctctc 2820 taaaagtcac accgtggata ctacgacaag tatcagtgct tacaggactt atgtctgtgg 2880 ttcacttaaa tcgaaccatt ggagcaatcc aacgttaata ctacgttaag tattagtgct 2940 tacagggcta aaccgtggat cactttaatc gaaccagtct cgaaagggac aaaactgact 3000 tcctagctgt ttttgagata attccaaaaa actcattatc cggcttaggg aagagcggcc 3060 agttgctgct gcgatcaaga cacgatcgtt caaaagggtg caactccccc ccccttggag 3120 ggtatccaag acc 3133 //