ID AB465583; SV 1; linear; genomic RNA; STD; VRL; 5364 BP. XX AC AB465583; XX DT 14-APR-2009 (Rel. 100, Created) DT 14-APR-2009 (Rel. 100, Last updated, Version 1) XX DE Navel orange infectious mottling virus genomic RNA, segment RNA 2, complete DE sequence. XX KW . XX OS Navel orange infectious mottling virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Sadwavirus. XX RN [1] RP 1-5364 RA Iwanami T.; RT ; RL Submitted (13-OCT-2008) to the INSDC. RL Contact:Toru Iwanami National Institute of Fruit Tree Science, Citrus RL Greening Research Program; Fujimoto 2-1, Tsukuba, Ibaraki 305-8605, Japan XX RN [2] RA Iwanami T.; RT "Properties and control of Satsuma Dwarf Virus"; RL Unpublished. XX DR MD5; a3e9b582efce0fd738d5ab6da0207ba8. XX FH Key Location/Qualifiers FH FT source 1..5364 FT /organism="Navel orange infectious mottling virus" FT /segment="RNA 2" FT /isolate="NI-1" FT /mol_type="genomic RNA" FT /country="Japan:Wakayama" FT /db_xref="taxon:85516" FT CDS 325..5055 FT /codon_start=1 FT /transl_table=1 FT /product="polyprotein" FT /note="This polyprotein contains movement protein and coat FT proteins." FT /db_xref="GOA:C0STS1" FT /db_xref="InterPro:IPR005306" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:C0STS1" FT /protein_id="BAH56591.1" FT /translation="MEIYGFSPLSFQDTESWKNSAFAACRGCKTYPIEEVGADGLVTVR FT EVPVGLMLKGVMAQYRSLLWTQFVADSATTTVDRKSFDFWLFCRRAEVAALRAFEARKK FT KRAAKAAALDAEGIIDRSYKGRSYKVSTRGLSWKSVRDAQKAARRAAKNFGFSICENSF FT SVLPSEGSKVTAGETPAASVVLPQICWADRKAALKSTSPVDVESLPFLGLLPESPRLRN FT AGLLSSLRAKIAILTASRDKQVPVPKRVVKTPKQDSVVESFEEATSVVGCIINGQMGVP FT KNPIIQRLLPQKRVFRSRIITPFRSQQLCSSRHKYDIAHQNDEKRWIIYPSIIEISSRA FT AYETAARLGLLPDCAQALERVRAFSSHHLDIEREVRRLELEEHPAPRKSVIAKVFKFFL FT EEYALAYDEAEQALRTQREDKRREHLEFMRALRRNAAEMLSKERSLAREAILESQRKCD FT ELKRHAEEGPMPLLMYKPEWHVTEIACQAMANSSERQTEKEMLQQRYRSSYSNTIYCPD FT SFAAKRFLKAADAHFERIFGYAVHRGTRTETMTQVAESPPPIRTAPTGRMVGGNLPVES FT PGAAAVRAAMHRAVERNRPGPGESSAMPAREPLLSHRGQYYARSLSDRYNNIFSRNNAY FT NLMRETDVPIMEFTFGQQQDIAIPLSTRFGNHPSLHIGELEIAVQSAVLTGVDTAMVIM FT VSDATHDRLEEGFLSLTILRLGAGWMRHTIPIGITVFPTDPLVDRILRLSVLTGGSPMA FT DGRQVARLHYGLLGQAYTGAGEQRLTQYATRRINVRQTHVTQFLEGNHIHIARSEDRQQ FT PLPHMNLEYRPLSGSTRYVARPGGYAAIGGGRQSVDITQNFISMPTHLTRSATLQDDDI FT LHPLNPNVTIESGDNNNNNCPTGNVDNREIPVVEEEEERRRPHGSAIQRGFAEFSERNE FT NVIEHLYVPSMHGLSLREDIHLFTENLAIPSTADFCKELARYNVLAKATSFKSASYYSR FT LLSGVAILRPHFKFTFRLVTPILESIPLLVVWDDLSELTTKVSRLSAAFQVIDSDHTKA FT AVYEVRPSGPTDLLTPSKHNYGMGGDIVIFSGGYGSSSLTSALRLKVEASLLKDSQLGS FT GEVSIPQGPSSMLSFSYLNEVDLGDLDLHCFLGSCKYNGTSPVGGRKYISVCPAAGLVH FT NKGKAAYLGLTASLFSMYNFWRGSYILKVDVLSKGSCAGAISIYVPPPGTSADHYTQSQ FT LDTLPRFELAWRGTGTARFEVENFSWVGWHITKPQRFTTNEDWFSLNSGLVVVLNQPPT FT TRAGGSSDIRVMFRIVKFKNLTLRERSTTCDIFTGIKDSVYTHPLVDVLDENISAPASI FT STDPEVGFESTSSVQAASPLISKNFGAYYAYLLGGASSGKRWHSYVLPITMGHHRSEIG FT STKTGYLNEALDQTVRIRYSLRNPLHILCSAGAYYATDLLFTLVIDGDFTAERAYAQLG FT LIQTPLREFYEGYSTDRTLTSEGGSVNQLGVGKSYIQLLVPRRNYRARSITTETAALFI FT ETIGSLSVRFTVSDKIKGVHLFVEAAGPIDIDGYGRGADIGFTESFVLMPSLRTAA" XX SQ Sequence 5364 BP; 1336 A; 1247 C; 1282 G; 1499 T; 0 other; gattgatcaa gcgaactgaa tgccccagac aaaaacaatc tctctctctc tttctctctc 60 aacctgaaag atttgaaaaa cgttttcatg tctacttttg ctttctgttc acttttgatg 120 tgtaggatag cgcctacact acgaaactag ggatagcgcc ctagccctga atcttgggat 180 agcgcccaag cttttcctcg ctttatttcg atttagcttt tgtaatttcg attacttgta 240 tttatttaat ttaaaaaaac caaaaagatt ttcttatttt tttaatttct tttttgtttt 300 ttcttattgc tttttatctc cgtaatggag atttatggtt tttcccccct ctccttccag 360 gacaccgagt cctggaagaa ttctgctttc gcagcctgcc gaggctgcaa gacctacccc 420 atcgaggagg taggtgctga cggactggtg acagtccggg aggtcccggt gggcctcatg 480 ctgaagggcg taatggccca atatcggtcc ctcttgtgga cccaatttgt ggcggactcc 540 gccactacca ccgtcgaccg gaagtccttc gacttctggc tcttctgccg ccgtgctgag 600 gtggcagcac ttagggcctt cgaggcccga aagaagaagc gcgccgctaa ggccgcagcc 660 ctcgatgctg agggcattat cgatcgctcc tacaaggggc gatcctacaa ggtctctacg 720 cgaggcctct catggaaatc tgtgcgtgat gcacagaagg ctgccaggag agcagccaaa 780 aactttggat tctcgatctg cgagaattct ttctccgtgc tcccatctga agggagtaag 840 gttactgcag gtgaaactcc tgctgcgtct gtggttctgc cacagatttg ctgggctgac 900 cgcaaggcag ctttgaagtc cacctctcct gtggacgtag agagcttacc cttcttaggg 960 ttgctcccgg agtctccccg cctccgtaat gcgggattgc tctcttcatt gagagctaag 1020 atcgcgattc tcaccgcgag cagggacaaa caggtccctg tccccaagag ggtcgtcaag 1080 accccaaagc aggactccgt cgtggagtcc tttgaggaag ctacatccgt tgtcgggtgt 1140 attataaatg gtcagatggg cgttccaaag aaccccatca tacaacgcct tttgccccag 1200 aagcgcgtgt ttcgatctcg gataattaca ccgtttagat cgcagcagct atgctcgtcc 1260 cgccataaat atgatatagc tcatcaaaat gatgagaagc ggtggataat ttatccatcc 1320 atcattgaaa tttcgagcag agctgcttat gagacggcag cacgcctggg actgttgcct 1380 gattgcgctc aagcgcttga gagagttcgt gccttttcct ctcaccatct agacatagag 1440 agggaagtgc gcagactcga actggaggag catccagccc ctaggaagag tgttattgcc 1500 aaggtattta aattcttcct cgaagaatat gccttggctt atgatgaggc tgagcaagca 1560 ttgcgtactc aacgtgaaga caagcgcaga gaacatttgg aattcatgcg cgcattacgg 1620 cgcaatgctg ctgagatgct atctaaagag cgcagtctgg caagagaagc tatccttgaa 1680 tctcaacgta aatgcgatga gctcaaacgg cacgcagagg aggggcccat gcccctactc 1740 atgtacaagc ccgaatggca tgttactgaa atagcatgcc aggctatggc caatagctct 1800 gagcgtcaaa ctgaaaagga gatgcttcaa cagaggtatc gcagcagcta ctccaacact 1860 atctattgcc cagattcttt tgcggcaaag agatttttaa aagctgctga tgcccacttc 1920 gaacgcattt tcggatatgc tgtgcacaga ggcacaagaa ccgaaacgat gactcaggtt 1980 gctgagtctc ctccaccgat tagaaccgct cccacagggc gaatggtcgg aggaaattta 2040 cctgtggaat ctccaggggc agccgccgta cgagctgcca tgcatcgagc cgtcgaaaga 2100 aacagacctg gacccggtga atcttctgca atgccggcca gagaacccct attatctcat 2160 aggggacaat attatgctcg atccttgtcg gacagatata ataatatctt ctcgcgcaat 2220 aacgcttaca atcttatgcg tgaaactgat gtgcccataa tggaattcac tttcgggcaa 2280 caacaagata ttgctattcc tttgtccacg cgtttcggaa atcatccgtc tctccacata 2340 ggcgaacttg aaattgctgt ccaatcagca gtactaactg gagttgacac tgccatggta 2400 atcatggttt ccgatgctac ccatgatcgt ttagaagagg gctttttgag ccttactatc 2460 ttaaggttgg gagcaggatg gatgcgccat acaataccaa taggtatcac cgtctttcca 2520 acggatcccc tggtagatag gattctcaga ctatctgttc taactggggg ctctccaatg 2580 gccgacggca gacaagttgc caggctccac tatggtctgc ttggccaagc atacacgggc 2640 gcaggcgagc aaaggttaac acaatatgcc actcggagaa ttaatgtgcg tcagacgcac 2700 gtaactcaat tcttggaggg caatcatatc catattgctc gctcagagga cagacagcag 2760 ccgctccctc acatgaactt ggagtaccgt ccgctgtctg gttcgacaag gtacgtggca 2820 cgacctggag gttatgctgc tattgggggt ggtaggcaaa gcgtagatat aacgcaaaac 2880 tttataagca tgcctacgca cctcactaga agtgccacgt tgcaagatga tgatatcttg 2940 cacccgttga atccaaatgt caccattgaa agtggtgaca ataataataa taattgtccc 3000 accggtaatg tagataatag agaaataccg gtggttgagg aggaggaaga gagaaggcgc 3060 ccacatggga gtgccattca gcgtggtttt gcagaattct cagagcgtaa tgaaaatgtg 3120 atagagcatc tatatgttcc atcaatgcac ggattatctt tgcgagaaga tatccatttg 3180 tttaccgaga atttggccat accttcaaca gctgatttct gcaaggaatt agctcgatat 3240 aatgtcttgg ccaaagccac aagttttaag agtgcaagct attattcacg attactttct 3300 ggggtggcga ttctgcgacc tcattttaaa tttacgttta ggcttgttac tcctatcctc 3360 gagtccatac cacttctcgt agtctgggat gacctttctg agcttacaac caaagtttcc 3420 agactctcag ccgcctttca agtaattgat tcagatcata cgaaggcggc tgtttatgaa 3480 gttcgtccat ccggaccaac ggacttactc accccaagca aacataatta tggcatgggg 3540 ggagatatag tcatcttttc cggtgggtat ggttcttcct cgctgacttc tgctttgcgc 3600 cttaaagtgg aggcgagtct actgaaggat tcgcaactag gatcaggaga agttagtata 3660 ccccaaggtc cgtcttctat gctttcattc agttatctta atgaagttga tcttggggac 3720 ttagatttac actgtttttt aggtagttgt aaatacaatg gtacttcgcc cgttggtggg 3780 cgaaagtata tatccgtgtg tcctgcggct ggtcttgtac ataataaggg taaagccgct 3840 tatttaggtc ttacggcttc ccttttttcc atgtacaatt tttggagggg aagctacatt 3900 cttaaagtag atgttctttc aaaggggagc tgcgctggag ctataagtat ttatgttcct 3960 ccccctggaa ccagtgctga ccactatacg cagtcccagt tggacaccct ccccagattt 4020 gaattagcct ggaggggaac tggaactgcg agatttgagg tggaaaattt ttcctgggtt 4080 ggttggcata taacgaagcc acagagattc accaccaatg aagattggtt ttctttgaac 4140 tctggactgg ttgttgtgct caaccaacct ccaactactc gcgctggagg ttctagtgat 4200 atacgggtca tgttcagaat tgttaaattt aaaaacctga ccctgagaga acgttctact 4260 acctgtgata tatttacagg tatcaaagac tcggtgtata ctcatcccct ggtggatgtt 4320 cttgacgaga acatttcggc accagcatcg atttccactg accctgaagt gggattcgaa 4380 tcaacatcga gcgtgcaagc agcttcgccc ctaatcagca aaaattttgg agcatactat 4440 gcttatctat tgggtggggc aagctcaggg aagaggtggc acagttatgt gctacctata 4500 acaatgggac atcataggag tgaaattggg agtaccaaga ccggatatct caacgaagca 4560 cttgatcaaa cggtcagaat caggtattct ttgcggaacc cattgcatat tttatgttcc 4620 gccggggctt attatgccac cgaccttctc tttactctgg taattgacgg agatttcacc 4680 gctgaacgag cctacgctca attgggcctc atacaaactc ctctgaggga gttttacgag 4740 ggttattcaa ccgatagaac cctcacttct gaagggggtt ctgtaaacca attgggtgtg 4800 ggcaagtcat atattcaatt acttgtcccg agaaggaatt atagggctag atccattacc 4860 acggaaacag cagccttgtt tatcgagact attggatctc tctcggtccg cttcactgtt 4920 agtgataaga ttaagggagt ccatttattc gttgaggctg ctggccctat tgatattgat 4980 ggatatggac gaggagctga cattggattc actgaatctt ttgttctaat gccctctctt 5040 cgtaccgctg cctaacttgg tagcaatgag gtgatgccca ccggacctta acgtgggttt 5100 atgtatgtat gtatatagtg aggtgtgttt cttttcttct ctttttggtg ggataggtgt 5160 gcaccctatc ggttccagtg cgcgtgctgg aacattgcaa agttttctgt cgtgtgttta 5220 ctttgttttc ttttgtttgt ttttatttaa aataaactgg atttcaatag agggtttctt 5280 gaactcttcc ctcttccgat ccaggagttt ggtgtgtttt tcttgatttc tgcaccggtt 5340 tcaatcagtg aaaatctgat ggcc 5364 //