ID   AB461487; SV 1; linear; genomic RNA; STD; VRL; 1243 BP.
XX
AC   AB461487;
XX
DT   09-NOV-2009 (Rel. 102, Created)
DT   18-JAN-2010 (Rel. 103, Last updated, Version 2)
XX
DE   Potato virus Y gene for polyprotein (P1 and HC-Pro region), partial cds,
DE   isolate: SYR-II-Sn.
XX
KW   .
XX
OS   Potato virus Y
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1243
RA   Chikh Ali M., Maoka T., Natsuaki K.T.;
RT   ;
RL   Submitted (23-SEP-2008) to the INSDC.
RL   Contact:Mohamad Chikh Ali Laboratory of Plant Pathology, Faculty of
RL   Agriculture, Utsunomiya University, International Agricultural Development;
RL   Mine-machi 350, Utsunomiya 321-8505, Japan
XX
RN   [2]
RX   DOI; 10.1111/j.1365-3059.2009.02174.x.
RX   AGRICOLA; IND44310597.
RA   Chikh Ali M., Maoka T., Natsuaki T., Natsuaki K.T.;
RT   "PVYNTN?NW, a novel recombinant strain of Potato virus Y predominating in
RT   potato fields in Syria";
RL   Plant Pathol. 59(1):31-41(2010).
XX
DR   MD5; 645d575f0bf2d067698336df02a56950.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1243
FT                   /organism="Potato virus Y"
FT                   /host="Solanum nigrum"
FT                   /lab_host="Nicotiana tabacum cv. Samsun"
FT                   /isolate="SYR-II-Sn"
FT                   /mol_type="genomic RNA"
FT                   /country="Syria:Aleppo"
FT                   /collected_by="Katsumi Katayama"
FT                   /collection_date="20-Oct-2004"
FT                   /identified_by="Mohamad Chikh Ali"
FT                   /db_xref="taxon:12216"
FT   5'UTR           <1..166
FT   CDS             167..>1243
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:D0FYB6"
FT                   /db_xref="InterPro:IPR001456"
FT                   /db_xref="InterPro:IPR002540"
FT                   /db_xref="UniProtKB/TrEMBL:D0FYB6"
FT                   /protein_id="BAI48932.1"
FT                   /translation="MATYMSTICFGSFECKLPYSPASCGHIVKEREVLASVDPFADLET
FT                   QLSARLLKQEYATVRVLKNGTLTYRYKTDAQITRIQKKLERKDREEYHFQMAAPSIVSK
FT                   ITIAGGEPPSKLESQVRRGVIHTTPRMRTAKTYHTPKLTEGQMNHLIKQVKQIMSTKGG
FT                   SVQLISKKSTHVHYKEVLGSHRAVVCTAHMRGLRKRVDFRCDKWTVVRLQHLARTDKWT
FT                   NQVRATDLRKGDSGVILSNTNLKGNFGRSSEGLFIVRGSHEGKIYDARSKVTQGVMDSM
FT                   VQFSSAESFWKGLDGNWAQMRYPTDHTCVAGLPVEDCGRVAAIMTHSILPCYKITCPTC
FT                   AQQYANLPASDLLKILHKH"
FT   mat_peptide     167..991
FT                   /gene="P1"
FT                   /product="P1 protein"
FT   mat_peptide     992..>1243
FT                   /gene="HC-Pro"
FT                   /product="helper component protein"
XX
SQ   Sequence 1243 BP; 390 A; 269 C; 276 G; 308 T; 0 other;
     caacataaga aaaacaacgc aaaaacactc ataaacgctt attctcactc aagcaacttg        60
     ctaagtttca gtttaaatca tttccttgca attctcttaa acgatattgg aaaccatttc       120
     aactcaacaa gtaatttcat cactttcaac caattttaga tcctcaatgg caacttacat       180
     gtcaacaatc tgtttcggtt cgtttgaatg caagctacca tactcacccg cctcttgcgg       240
     gcatattgtg aaggaacgag aagtgctggc ttccgttgat cctttcgcag atttggaaac       300
     acaacttagt gcacgattgc tcaagcaaga atatgctact gttcgtgtgc tcaagaacgg       360
     tactcttacg taccgataca agactgatgc ccagataacg cgcatccaga agaaactgga       420
     aaggaaggat agggaagaat atcacttcca gatggcagct cctagtattg tgtcaaagat       480
     cactattgct ggtggagagc caccttcaaa acttgaatca caagtgcgga ggggtgtcat       540
     ccacacaact ccaaggatgc gcacagcaaa gacatatcac acgccaaagt tgacagaggg       600
     acagatgaac caccttatca agcaggtgaa gcaaattatg tcaaccaaag gagggtctgt       660
     tcaactgatt agcaagaaaa gtacccatgt tcactataaa gaagttttgg gatcacatcg       720
     cgcagttgtt tgcactgcac atatgagagg tttacgaaag agagtggact ttcggtgtga       780
     taaatggacc gttgtgcgtc tacagcatct cgccaggacg gacaagtgga ctaaccaagt       840
     tcgtgctact gatctacgca agggcgatag tggagttata ttgagtaata ctaatctcaa       900
     aggaaacttt ggaagaagct cggagggcct attcatagtg cgtgggtcgc acgaaggaaa       960
     aatctatgat gcacgttcca aggttactca aggggttatg gattcaatgg ttcagttctc      1020
     aagcgctgaa agcttttgga agggattgga cggcaattgg gcacaaatga gatatcctac      1080
     agatcataca tgtgtggcag gcttaccagt tgaagactgt ggcagagttg cagcgataat      1140
     gacacacagt attttaccgt gctataagat aacctgccct acctgtgctc aacaatatgc      1200
     caacttgcca gccagtgact tacttaagat actacacaag cac                        1243
//