ID AB456532; SV 1; linear; genomic RNA; STD; VRL; 4026 BP. XX AC AB456532; XX DT 26-NOV-2008 (Rel. 97, Created) DT 26-NOV-2008 (Rel. 97, Last updated, Version 1) XX DE Radish mosaic virus genomic RNA, segment RNA2, complete sequence, strain: DE California. XX KW . XX OS Radish mosaic virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Comovirus. XX RN [1] RP 1-4026 RA Namba S., Yamaji Y., Oshima K., Komatsu K.; RT ; RL Submitted (01-SEP-2008) to the INSDC. RL Contact:Shigetou Namba The University of Tokyo, Graduate School of RL Agricultural and Life Sciences; Yayoi 1-1-1, Bunkyo-ku 113-8657, Japan XX RN [2] RC Publication_Status: Available-Online RX DOI; 10.1007/s00705-008-0229-0. RX PUBMED; 18974925. RA Komatsu K., Hatada K., Hashimoto M., Ozeki J., Maejima K., Kagiwada S., RA Yamaji Y., Namba S.; RT "Complete nucleotide sequence of a California isolate of Radish mosaic RT virus"; RL Arch. Virol. 153(11):2167-2168(2008). XX DR MD5; 689190aa5831a7245108289c40607dd7. XX FH Key Location/Qualifiers FH FT source 1..4026 FT /organism="Radish mosaic virus" FT /segment="RNA2" FT /strain="California" FT /mol_type="genomic RNA" FT /country="USA:California" FT /db_xref="taxon:328061" FT CDS 417..3704 FT /codon_start=1 FT /transl_table=1 FT /product="RNA2-polyprotein" FT /db_xref="GOA:B6ZKN5" FT /db_xref="InterPro:IPR003181" FT /db_xref="InterPro:IPR003182" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:B6ZKN5" FT /protein_id="BAG84603.1" FT /translation="MTYFSLQNHFVNYILARHGCDEDSGDFRVSPQRKYNELLVQSPLK FT FGFFIFFFHFVVFIERLFGFRFAPDSWLSYRFQGLWRSLRKPIELAKVQQAALAKYAPQ FT PFVFLDPIITYSSDSIIDMEQVMERGVAAKALMVQDKVLINKKHKYEGIKDCIPAGKDM FT YVFRQKMFDMLMRRKRSKEVDITRIEGSEIIEMKHMDVGTLTPGENVVLNVKLVDDDSI FT LNSKASDYTLHHSARESKYATAMHVGAIEVIFDSFASPSSDIVGGVVLVDTAHKTVENA FT VRSVFVTGLAGGKMIRVLMYPNTLVEIGPKMNERFKLVCSTSNSDIADGFNLAAVKVNV FT VGCTQSLTARYVPQPFLDQCLNEERGTVVEYLGQMSYVMHNSNEISEEFLAQQTMAFDL FT GSNLRLQGSSSGASLQRSTSMRYLVGPRQSFKQLEPDKEPSAFERKRLEAKDGADKFRD FT STFVDPVYGKTRRAFGQTSMTRSLLNRFSSANETEGTPLDTKIARTKILLTKVMAGGKI FT LYTARLSDVLLNKDQRAAISFQRTHVQHRKLVALATLGVPENTGCALMMCYNSGVRGKA FT VVDAYTASAEASVIWNPACQRQAMLEIDVNPCQSGWSYQYLRQTNSYFNVVCISGWTTT FT PLTDLSMTIDWYLSSEESVTSIYYASGGNPKIKLNRWMGRLIFPQGTETTMQRMPLAIG FT GGAGGNGLVYMNMPNALCSLWRYMRGGVKFEVIKLSSPYVKATIAFFIAFTDVDATLPN FT LEAYPHKLVQFAEIQDRVTIEFDKDEFVMAWSSQVHTNVPLDQDGCPYLYAVVHDCAGS FT TIPGDFNIGVVLKEMVDVEAIGRHPGWKGARPLPASPQGLRKSPSGVWNELYTIRGPPE FT AKSTEVVQFAIDLIGVGISTAGRGIWSLETSNSPMNNLLRTATWKSGTLHFQVLMEGNP FT LIKRGDWASYCEISLVQSAKDTTLSSRNWVMKDPSSWELEFDIKVEGPNAGFENWETHL FT SNQTSWYLTFAVYNPDQTTVFVVNGMLNDDFCCAGNTLMPPFLEPQSLASDRTPLSQMT FT FSYEDDLVRSVDPPDPANTQERTETSSDQERRLQQQRRRGFNNKFAF" XX SQ Sequence 4026 BP; 1136 A; 766 C; 950 G; 1174 T; 0 other; tattaaaatt ttattgaaat tttgataaac cgcaatcagg accagtgtcc gaactgttac 60 ttttgaactc aattttaaac gaaggcaggt aattggcttt taaaccgatc agactgtcat 120 tgagaacaaa acaatcaggt tacacgcaag ctcgcaagag cactttgtgc gaagtgaggg 180 acacttgtat tgtcacattg gtgctttcgc atctttgggc gctacagtta ccttgttgtt 240 tgcattccta actatacgaa ggtaggtaac gagcttacaa acttgtcaga ctaccatagg 300 aaacgatagc gcgggttcac attgctgtgc ctcttagaga atatcagata ttgtgaaagc 360 gtgcgctggg gttgggagtt acgctcgtct aaaatcaatt aaatcattgg acgtgaatga 420 cttacttttc ccttcaaaat cattttgtga attacatatt agctaggcac ggttgcgacg 480 aggattcagg ggacttccga gtctctcctc aacgaaaata caacgaacta ttagtgcaat 540 cccctttaaa gtttggcttt tttattttct ttttccattt tgtagttttt atagaacgtt 600 tgtttggatt tcggtttgca ccagatagct ggttgtcgta tcgctttcaa ggcttgtgga 660 gaagtttgag aaaacctatt gagcttgcca aagttcaaca ggctgctctt gcaaaatacg 720 caccgcaacc ttttgttttc ttagacccca ttattacata ctcatcagat agtattatag 780 atatggaaca agttatggaa cgtggtgtgg cagcaaaagc cctgatggtg caggacaaag 840 tgttgattaa caaaaagcac aagtatgagg gcattaaaga ttgcattcca gcaggaaagg 900 acatgtacgt tttccgtcag aagatgtttg atatgttgat gcgccggaaa aggagtaagg 960 aagttgatat cactcgcatt gaagggagtg aaataattga aatgaagcac atggatgttg 1020 gaactctaac tcctggtgaa aatgttgtgt tgaatgttaa gcttgtagat gatgatagta 1080 tcttgaacag caaagcaagt gactacactc ttcaccattc cgcacgtgaa tcaaagtatg 1140 cgacagccat gcacgttgga gctattgaag tcatttttga tagctttgcg tccccttcta 1200 gtgacatagt tgggggagtg gttctggtgg acacagctca caagacagtt gaaaatgctg 1260 tgcgaagtgt gtttgtgaca ggcctggcag gtggaaagat gatacgtgtg ctcatgtacc 1320 caaatacact ggttgaaata ggacccaaga tgaatgagag attcaaactg gtgtgttcta 1380 cttctaacag cgacattgca gatggcttca atctagctgc agtcaaagtt aatgtggtag 1440 gatgtactca gagtttaact gcgcgttatg tgccacagcc atttttagat caatgtctta 1500 acgaagaacg tggcactgtt gttgaatacc taggccaaat gtcctatgtg atgcataatt 1560 ccaatgagat ttctgaagaa ttcttggcac aacaaacaat ggcatttgat cttggaagca 1620 atttacgctt gcaggggtct tcgtcaggag cgtccttaca gcgctctacc tcaatgagat 1680 acctggtagg accaagacaa agctttaagc agctagagcc agacaaagaa ccatcagcat 1740 ttgaaagaaa gaggcttgag gcaaaggatg gtgcagacaa attccgtgat tctacatttg 1800 tagatcccgt gtatggaaag acaaggagag cttttggaca aacttccatg acgcgttcgt 1860 tactcaacag attttcatct gctaatgaaa cagagggaac tccccttgac accaaaatag 1920 caagaacaaa aattttgctt acgaaagtta tggcaggagg aaagatcttg tatacagcgc 1980 gcctaagtga tgttctttta aataaagatc aaagagctgc catttctttc caaagaacac 2040 atgttcagca cagaaagttg gtggcactag ctacactggg agtcccagaa aacactgggt 2100 gtgcgttgat gatgtgctac aacagtggtg tacgtggaaa agcggttgta gacgcttata 2160 cagcgtccgc agaagcaagc gtaatttgga acccagcctg ccagcggcaa gcaatgcttg 2220 aaatagatgt gaacccgtgc cagagtggtt ggagctatca gtatctcaga caaaccaaca 2280 gctactttaa tgtagtgtgc atttcaggtt ggacaacaac tcctttaacg gacttgtcca 2340 tgaccataga ttggtatctg agttccgaag agagtgtgac ctccatatat tacgcttcag 2400 gtggcaatcc taagataaag ctgaacaggt ggatggggcg tttgattttc ccacagggaa 2460 cagaaactac catgcaacgt atgccccttg ccataggagg cggtgctgga ggaaatgggt 2520 tggtgtacat gaatatgcca aatgccttgt gttccttgtg gagatacatg aggggaggag 2580 ttaaatttga ggtaatcaag ttaagttctc cctatgtgaa ggcaaccatt gccttcttta 2640 tagctttcac cgacgttgac gccacattac ctaatcttga agcataccct cacaagctcg 2700 ttcaattcgc agagatccag gacagagtga cgattgagtt tgataaggat gaatttgtca 2760 tggcctggtc atcacaggta cacaccaatg tgcctttaga tcaagacgga tgtccttatt 2820 tgtacgctgt cgtacatgat tgtgcgggtt caaccattcc tggtgatttt aacataggag 2880 ttgttctgaa agagatggtt gatgttgaag ctattgggag acatccagga tggaaaggag 2940 cccggccttt accagcatca ccacaaggac tgcgcaaaag cccgtcaggt gtgtggaacg 3000 agttgtacac aattagaggt ccccctgagg ctaaatctac agaagtcgtt cagtttgcaa 3060 ttgatcttat aggtgtcggg atttctaccg caggacgtgg aatatggtca ctagagacta 3120 gcaatagtcc tatgaacaat ttgctgcgta cggctacctg gaaaagtgga acacttcatt 3180 tccaagttct catggaaggg aatcctctga tcaagagagg agattgggct tcttattgcg 3240 aaatctcatt agtccaaagc gctaaagaca ctacgctgtc aagccgtaat tgggttatga 3300 aagatccctc ctcatgggaa ttggaatttg acatcaaggt tgagggtccc aatgctggct 3360 ttgaaaactg ggagactcat ctaagcaatc aaacgagttg gtatctgacg ttcgcggttt 3420 ataaccctga tcaaactaca gtgtttgttg tgaatggcat gctcaacgat gatttttgct 3480 gtgctggcaa tacattgatg cctcctttct tagagccaca aagcttggct tcagatagaa 3540 cacccttatc acaaatgacc ttcagttatg aggatgattt ggtaaggagt gtggacccgc 3600 cagatccagc caatacacag gaacggacag agaccagtag tgatcaggag cgtaggttgc 3660 aacaacaacg aagacgtggt ttcaacaata aatttgcgtt ttagaatagt cttcttttat 3720 agtttctttt ccttgtttcg tctttatttt gttttgctgt gttcatagtg cgtcactttc 3780 ttttcttttc tcttttagaa gttttacttt tagctatttt actttccttt attttgtgtg 3840 attacaagtt ttttaagttg gtttgaatgt tagattaaat cttctttgga tgtttgaaag 3900 tctgtggaaa cattccggtt cagagagcag gaccgcctag gaggtaggac tctgggttta 3960 gttgctctca catgttataa atagaataca tttgcttact tttgttattg agtgtgtttt 4020 cttttt 4026 //