ID AB456531; SV 1; linear; genomic RNA; STD; VRL; 6063 BP. XX AC AB456531; XX DT 26-NOV-2008 (Rel. 97, Created) DT 26-NOV-2008 (Rel. 97, Last updated, Version 1) XX DE Radish mosaic virus genomic RNA, segment RNA1, complete sequence, strain: DE California. XX KW . XX OS Radish mosaic virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Comovirus. XX RN [1] RP 1-6063 RA Namba S., Yamaji Y., Oshima K., Komatsu K.; RT ; RL Submitted (01-SEP-2008) to the INSDC. RL Contact:Shigetou Namba The University of Tokyo, Graduate School of RL Agricultural and Life Sciences; Yayoi 1-1-1, Bunkyo-ku 113-8657, Japan XX RN [2] RC Publication_Status: Available-Online RX DOI; 10.1007/s00705-008-0229-0. RX PUBMED; 18974925. RA Komatsu K., Hatada K., Hashimoto M., Ozeki J., Maejima K., Kagiwada S., RA Yamaji Y., Namba S.; RT "Complete nucleotide sequence of a California isolate of Radish mosaic RT virus"; RL Arch. Virol. 153(11):2167-2168(2008). XX DR MD5; 714ed7cc9ceb60a900bf53cdce2388fd. XX FH Key Location/Qualifiers FH FT source 1..6063 FT /organism="Radish mosaic virus" FT /segment="RNA1" FT /strain="California" FT /mol_type="genomic RNA" FT /country="USA:California" FT /db_xref="taxon:328061" FT CDS 340..5901 FT /codon_start=1 FT /transl_table=1 FT /product="RNA1-polyprotein" FT /db_xref="GOA:B6ZKN4" FT /db_xref="InterPro:IPR000199" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="UniProtKB/TrEMBL:B6ZKN4" FT /protein_id="BAG84602.1" FT /translation="MACVTLDRDQQSYALIPYVTDKHVTWLLKCYVRVNTFDPDFPVTK FT RLERLRQHHFDLLCLGYGAFVMHRNAMAHVPRTVETADFIFEDYHQFLCDLVTGNAGIT FT RLRKYINVCYGTYLDMVLEFSACTLDDEGDEDFELQGLKSCLHSLANYIPSTLDRAISW FT STNKVIDGIRARFEEVVAEWCPMAMQACSWISNIWDKVTLWVQESIEAMRWFLKGAREL FT FYYGVSILTASCVIGIVEKILVATNLLAPNRGLVEAFLSSAALTGAFMSFKKKEDPTPM FT ITMISVLAGVVSAAVTAMFGAPCVAVLQGPVELLESAATALGIFCETTLLSMGKTCQAV FT NQISTCAGNLKAMAGKLFGILQDFIWKIFGMESRFLRDASLMFEEDVDQWLKDIAECQD FT SYLAKAYSSQDDIMKMQALIKKGHDMRSKVLKVTSRISPVLANTVTRGVESVEKLLRES FT LCQGVKATRKIPFVVYAYGESRTGKTLVVDKLITDFQNHFGLGKDTVYSRNPIDQYWSG FT YRRQPIVSIDDFGAVACDPSMEAQMIPLVSSAPLPLTMAAIEEKGMMFDSKFIFCSSNL FT LEASPESKLQDNQAFRNRRHVLINVKLDATKPYNMHDFTENQIYQILKYDNGTYVVQAE FT FHTYGDLFSYCLERWEKHESEQTANLANSLEEPKADGDFINFEFLMHTLMRRNLPDKMV FT DVIFEERTQTQFVLLVTYRRKGKLWSYYVSPEGRIQTIAESLEDPKALAKEVESMDFLR FT RMYEMLRYNEETDLIVKMHLKDLAREDFYDDKMNYIGTFGNEREHALMRSTFDSMAGWH FT KVVLCGMGVLQDRCSSVKWYDGIIEKIQDTMYTLYSKEISEWPMGLKIVVGVLLTSLFG FT AGLWKLMGVLQGTGSVAALGVTAATHFGHEHGGARATVQSRKPNRYDVAQYKYRNVPIT FT KRAWAQGDMPISHATAMIFDRIKASWQYGHTEAQIAMVPGRRFIGYSHFFRTIERPIQV FT RIHTASGSQPLFYKPENMHYFEESELCVYEDSALQDIAHTCWDLFEWDFEQIQQDSFKA FT LFLSCKRKSSTGQPNPEWADIDVRTRSESLMVQEGEYSRVLPRYLEYTAPTVNHDCGSL FT IVAEVNKTFKIVGVHVAGSGGTKGYACLLPPLVKKVQAQHAQKYFDYLPFAEKEGEGIE FT KVAMLQKGIHIPLPTKTALVETPVEWHLDTPCDKYPSILSNEDPRLEVSGQTDYDPFKA FT GILKYKDPMGVLDNKLLVEVCEEIEQSWLDCKEEGETFEEVSLEQAINGVKDVDYMDRI FT PLATSEGFPHILSRAHGEKGKIRFVEGDSEEMMLIPGTSVSEALDIMEAQLENEVPTLI FT GIECPKDEKLPHRKIFEKPKTRCFSILPMEYNLLVRRRFLTFVRFIMRNRNVLPCQVGI FT NPYGMEWTDLAMRLKRKGNNILCCDYSSFDGLLSKQVMKAMSDMINNFCGGNESSKRKR FT EHLLMACCSRYAICKNTVWKVECGIPSGFPLTVICNSIFNEILIRYSFKAILRSQKIPD FT MISVSFDEYVSMVVYGDDNLLSVNEVIKPYFDGKRLKEFLATLHITITDGKDKTSPFLQ FT FRCLEDCDFLKRGFKNRGLYWDAPEEKESLWAQLHYVNANNLEKHEAYKTNLVTVLREL FT FMWDKNECAELRRKALQRISWLEPSDLQTVAQIEAWYAGNRGKYLPDSSDSISMLLQKE FT NLGPLLAPQGEQRGIEITPRVRTANLAHESFKTAKDDEVWILCQTMYPHGRLPEGVIAV FT NWPVGTGRGGLPTSTWMDENFKRSTSELRKKLRCALDNGKRLVFATREGILPCNIMAVL FT LLVLEKKMKPEESNVILSAAILQCKSLGYLPRECDFAF" XX SQ Sequence 6063 BP; 1698 A; 1097 C; 1524 G; 1744 T; 0 other; tattaaaatt ttattgaaat tttgataaac cgcaatcagg accagtgtcc gaccagttac 60 aattacattc tcaattactt gtgaaggtag gtaaggggct tagaaacctc tcagactact 120 attgagattg aaaatttgtt acgcgttttc ccaagctttc ttgggcaagc cattgtgtgc 180 ttgctacttg gattgtcatt gagaacttaa gtgttgttag ttattctgcg tttacatcat 240 tgctgtgccc tttacaaaag gaatatcaga tattgcttgt aaacaccgtt atttatttgc 300 ttggttcaaa cataccgcag gctttaagcc attaaaataa tggcctgtgt tactttggat 360 cgagatcaac agagctatgc tctgatcccg tacgttacag ataaacatgt tacatggctt 420 ctgaagtgtt atgttcgagt gaacactttt gatcctgatt tcccggttac caagcgcctt 480 gagcgcctaa gacagcatca ttttgatctg ctgtgcttgg gttatggggc gtttgttatg 540 cataggaatg ccatggcaca tgtgccacgc acagtggaga ctgctgattt tatttttgaa 600 gattatcatc aatttctctg tgatctggtt acaggaaatg ctggcatcac ccgcctcagg 660 aaatatataa atgtttgcta tggtacttac ttggacatgg tccttgagtt tagtgcatgc 720 acacttgatg atgaaggaga cgaagacttc gagctgcaag gcctcaaaag ttgtttacac 780 agcttggcta attacattcc atccaccctg gatagggcca tttcatggtc aaccaacaag 840 gtcattgatg gtattcgagc gcgctttgaa gaggtggttg ctgaatggtg tcctatggca 900 atgcaggcct gttcttggat ttctaatatc tgggacaaag ttactttatg ggtacaggaa 960 tctatagagg caatgcgctg gttcttgaaa ggagctcgcg aattgtttta ttatggagtg 1020 tccattttaa cggccagctg tgttattggt attgtggaga aaatattggt tgctacaaac 1080 ttgttggctc ccaatcgtgg acttgttgaa gcctttctat caagtgctgc cttgactggg 1140 gcatttatgt cgtttaagaa gaaggaggac ccaacgccaa tgataacaat gatttcagtt 1200 cttgctggag tggtttcagc tgctgttact gccatgtttg gtgcgccctg cgttgctgta 1260 ttgcaaggtc cagttgagtt gttagagagt gctgctactg cacttggaat tttctgtgaa 1320 acaacattgt tgtccatggg gaaaacctgc caagcagtga accaaattag cacatgcgct 1380 gggaatctga aggcgatggc aggaaaactc tttgggattt tacaggattt catctggaag 1440 atatttggaa tggaatctag atttttgcgt gatgcatccc tgatgtttga ggaagatgtt 1500 gaccaatggc tgaaagatat tgcagaatgt caagattcgt atttggcaaa agcttattct 1560 tcccaggatg acatcatgaa gatgcaggcc ctgatcaaga aagggcatga tatgcgttcc 1620 aaggtgctga aagttaccag ccgcatctcc ccagttttag caaatacagt tacacggggt 1680 gttgaatcgg tagaaaaact gctacgagaa tccttgtgcc agggagtgaa agcaacgagg 1740 aagattcctt ttgttgtata tgcttacgga gagtccagaa ctggtaaaac gttggttgtg 1800 gataagctca tcacagactt ccagaaccat tttggtcttg gaaaagacac tgtttacagt 1860 agaaacccca ttgaccaata ttggagtgga tatcgaagac agcctattgt gagcattgat 1920 gattttggag ctgtcgcctg tgatccttct atggaagctc agatgatacc attggtgtcg 1980 agtgcaccct tgcctttaac tatggctgcc attgaggaga aaggaatgat gtttgactca 2040 aagttcattt tttgctcttc caatttactg gaagcaagcc ctgagagcaa actgcaagat 2100 aaccaggctt ttcgcaatag gagacatgtt ttgataaatg ttaaattgga cgctaccaag 2160 ccctacaaca tgcatgattt tacggaaaac cagatctacc agattctgaa atacgacaac 2220 ggcacgtatg ttgtgcaggc cgagttccat acctatggtg acttgttctc atactgtctg 2280 gagagatggg agaagcatga aagtgagcaa acagcaaatc tcgccaacag cttggaagag 2340 ccaaaagcag atggggactt cataaacttc gagtttttaa tgcacacact tatgaggcgg 2400 aatcttcctg acaagatggt tgatgttatc tttgaggaaa gaacccagac tcagtttgtg 2460 ctccttgtta cttacaggcg gaaaggaaaa ctctggagct attatgttag cccagaagga 2520 agaatccaaa caatagctga atcgcttgag gatccaaagg cccttgcaaa ggaagtggaa 2580 tcaatggatt ttctgcggag gatgtatgag atgttgaggt ataacgagga aacagacttg 2640 attgtgaaga tgcatctcaa agacttagcc agagaggact tctacgacga caaaatgaac 2700 tatatcggca cttttggaaa tgaaagggaa cacgcactga tgcggtctac ttttgattct 2760 atggcaggct ggcacaaagt tgtgttgtgt ggaatgggag ttcttcaaga ccgatgttcc 2820 tctgttaagt ggtatgatgg cataatcgag aagattcagg ataccatgta tacgttgtat 2880 agcaaggaaa taagtgagtg gccaatggga cttaagattg ttgttggagt tttgctcaca 2940 tcactttttg gagctggact ctggaagttg atgggagttc tccagggaac gggtagcgta 3000 gctgccttgg gagtgactgc tgccacccat ttcggccatg agcatggagg agctagagcc 3060 actgtacaaa gtcggaaacc taatcggtat gatgtagcgc aatataagta cagaaatgtt 3120 cccattacta agcgtgcttg ggcacaggga gacatgccta tcagccatgc aacggcaatg 3180 atttttgatc gcatcaaggc aagctggcaa tatgggcata cggaagctca aattgcaatg 3240 gtgcctggaa ggcgcttcat cggttactcc cacttctttc gtacaataga gcgtccaatc 3300 caggtgcgga tacacacagc tagtggctct cagcccttgt tttacaagcc tgagaacatg 3360 cattattttg aggaaagcga gctttgtgtg tatgaggata gtgctcttca ggacatagcg 3420 cacacatgct gggacttgtt tgaatgggat tttgagcaga ttcagcaaga ttctttcaaa 3480 gcgttgtttc tttcatgcaa aaggaagagc agcactggac aaccaaaccc agagtgggcc 3540 gatatagatg tgagaacacg ctcagaatca cttatggtgc aagaaggaga gtactcacgt 3600 gttctcccac gctatttgga atacacggca ccaacagtta accacgattg tggttccttg 3660 attgtggctg aagtgaataa gacgttcaag attgttggtg ttcatgtagc tggctccggt 3720 ggcactaaag gatatgcttg tttgttgccc ccacttgtta agaaagttca agcacagcat 3780 gcgcagaagt attttgatta cttgccattt gcagagaaag aaggtgaggg tatagaaaag 3840 gttgccatgt tacaaaaagg catccatatt cccttaccca caaaaacagc gctggttgag 3900 acacctgttg agtggcattt ggacacgcct tgcgataagt atcccagcat tttgtctaat 3960 gaagatcctc gcttggaggt gtctggtcaa actgactatg atccatttaa agctggcatt 4020 ctgaaataca aagatcctat gggggttttg gacaacaagt tgctggtgga ggtctgtgag 4080 gagattgaac agagctggct ggactgtaaa gaagagggtg aaacgtttga agaagttagt 4140 ttggaacaag ccattaatgg agtcaaagat gttgactata tggatagaat tccacttgcg 4200 acgtcagaag gatttcctca tattttgtcc cgggcacatg gtgaaaaagg caaaatacgt 4260 ttcgtggaag gcgattctga ggaaatgatg ttgattccag gaaccagcgt atcagaagct 4320 cttgacatta tggaggccca gctggaaaac gaagttccaa ctttaattgg aatagagtgc 4380 cccaaagatg agaagctgcc acaccggaag atatttgaga agcctaagac acgttgtttt 4440 tctatcttac caatggaata caatttgttg gtgcgtagaa ggttcttgac ttttgtccgc 4500 tttattatgc gaaacaggaa tgtgttaccg tgtcaggttg ggattaatcc ttatggcatg 4560 gagtggacgg atctggcaat gcgtttgaag agaaagggca acaacatctt gtgctgtgat 4620 tacagtagtt ttgatgggtt gctttccaag caagtgatga aagctatgtc tgacatgata 4680 aacaacttct gtggtggtaa tgagagttcc aaacgaaagc gagagcactt gctaatggct 4740 tgttgttctc gatatgccat ttgtaagaac acagtatgga aagttgagtg tggtattcca 4800 tccgggtttc ctctcactgt gatatgcaac tccattttca atgagatttt gattagatac 4860 agcttcaagg caattttgcg ctctcagaag atacccgata tgatttcggt gagttttgat 4920 gaatacgtga gtatggttgt ctatggagat gataatttgc tgtctgtgaa tgaggtaatt 4980 aagccctatt ttgatggtaa acggttgaag gaatttttag ctactctcca tatcaccatc 5040 actgatggga aggacaaaac aagcccattt cttcaatttc ggtgtctaga agactgtgat 5100 tttctcaaga gaggattcaa aaaccgaggt ttgtattggg atgctccaga ggagaaggag 5160 agtttgtggg cacagcttca ttatgtgaat gccaacaatc ttgaaaagca cgaagcctac 5220 aagacaaatc tcgtgactgt cttacgtgaa ctgttcatgt gggacaaaaa tgagtgtgct 5280 gagcttagaa gaaaggcgct tcagagaatt tcatggttag aaccgagtga tttacagacg 5340 gttgctcaga tagaagcttg gtatgctgga aatagaggaa agtatttacc agattcgagt 5400 gatagcataa gtatgcttct acagaaggag aacttgggcc ctttattggc accccaggga 5460 gagcagagag gaatagaaat cacacccaga gtgagaaccg ccaatttggc acatgaaagc 5520 tttaaaacag ctaaggatga tgaggtgtgg atcttgtgtc aaacaatgta tccacatggg 5580 cgtttaccag agggagttat tgctgttaat tggccagttg ggacaggaag aggtggcttg 5640 ccaacgtcta cttggatgga tgagaacttc aagcgttcca catccgagct tcggaaaaaa 5700 ctgagatgtg ctttggacaa tggcaagaga ttggtctttg ctacacgaga aggaattcta 5760 ccgtgcaaca tcatggccgt attacttttg gtacttgaaa agaagatgaa gccggaggag 5820 agtaatgtga ttttatccgc agctattttg caatgtaagt cattaggtta tttgcctaga 5880 gagtgtgatt ttgcttttta gatttgtaca tcttctttgt gcatttgaaa gtctgtggaa 5940 atgcactggt tcatggaaca ggaccaccta ggaggtagga ctctgggttt tattgttctt 6000 gtgtgctata tataaattac cataaatatt gttttagttt ctatatagat atttggttat 6060 ttt 6063 //