ID AB444585; SV 1; linear; genomic RNA; STD; VRL; 2424 BP. XX AC AB444585; XX DT 27-SEP-2009 (Rel. 102, Created) DT 30-MAY-2020 (Rel. 144, Last updated, Version 2) XX DE Melandrium yellow fleck virus genomic RNA, segment RNA3, complete sequence, DE strain: KU1. XX KW . XX OS Melandrium yellow fleck virus OC Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; OC Martellivirales; Bromoviridae; Bromovirus. XX RN [1] RP 1-2424 RA Narabayashi T., Iwahashi F., Kaido M., Okuno T., Mise K.; RT ; RL Submitted (01-JUL-2008) to the INSDC. RL Contact:Kazuyuki Mise Kyoto University, Laboratory of Plant Pathology, RL Graduate School of Agriculture; Kitashirakawa-oiwake-cho, Sakyo-ku, Kyoto RL 606-8502, Japan XX RN [2] RA Narabayashi T., Iwahashi F., Kaido M., Okuno T., Mise K.; RT "Melandrium yellow fleck bromovirus infects Arabidopsis thaliana and has RT genomic RNA sequence characteristics that are unique among bromoviruses"; RL Arch. Virol. 154:1381-1389(2009). XX DR MD5; c7f493ba0a40e0053e2bc850bbfb2a9a. XX FH Key Location/Qualifiers FH FT source 1..2424 FT /organism="Melandrium yellow fleck virus" FT /segment="RNA3" FT /strain="KU1" FT /mol_type="genomic RNA" FT /db_xref="taxon:545259" FT 5'UTR 1..428 FT repeat_region 53..449 FT /rpt_type=DIRECT FT /rpt_unit_range=53..250 FT /note="One short ORF (230-256) is present in this region." FT misc_feature 65..81 FT /note="First polypyrimidine tract with heterogeneous length FT among clones" FT misc_feature 263..280 FT /note="Second polypyrimidine tract with heterogeneous FT length among clones" FT CDS 429..1316 FT /codon_start=1 FT /transl_table=1 FT /gene="3a" FT /product="3a protein" FT /db_xref="InterPro:IPR000603" FT /db_xref="UniProtKB/TrEMBL:C8KH77" FT /protein_id="BAI40163.1" FT /translation="MSNLVKPFTGRSSTVTEQVGSSNNNTLISEIFSEKAIKEMASECK FT LGMYTNLSSDKMFNYIDLVPKTQMSKLISWTKSEYEQGKVPSTGVLSIPRVLLFIVRTV FT SSSVSGSITVRLCDSGVIATSGGLDSIDNQECTVQLSALPALIALSPSYDCPMEVLGGN FT KGRNRCFGLVTQLNGVVGVTGTVAMTHAYWNASFKVKPNNYKSYSPRHVSVTAFDRLQA FT YGKKELKQYIKNISNQNVDHGLLLGSNSNFSNDNVITSVEELDESPVNDSKPKIAMSAK FT SIAGVPASAPKPRR" FT misc_feature 1317..1561 FT /note="intercistronic region" FT CDS 1562..2140 FT /codon_start=1 FT /transl_table=1 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:C8KH78" FT /db_xref="InterPro:IPR002009" FT /db_xref="UniProtKB/TrEMBL:C8KH78" FT /protein_id="BAI40164.1" FT /translation="MSTPGTVKMTRAQRRAAARRAAKPQINKRIQPVIVEPPTSGLGRA FT IKALGGHTITKWETSCPEIKAKSSIQITIPLPSELSSERNKVLKVGRVLLWLGLLPSIN FT GQVKACVTQTNPVPGAAFQSALAIADSSKEVVSAMYVDIFKGITIEDFVNDLAIYVYSA FT VDVAAKDIIVHLEVEHVRPVLDDYFTPLH" FT 3'UTR 2141..2424 XX SQ Sequence 2424 BP; 641 A; 508 C; 521 G; 754 T; 0 other; ataaaataaa ataaaattct ttctaattgc ttgactccga taaagcaact aattgtagaa 60 tttacttttt cttttttttc caatttatcg tttcggtgta tctttaaggt tggaacacac 120 agtaccctac tcttgttagt aggtcctccc gttggacggc ttggaagaaa atactgttga 180 cctataattc ctctcagcgt tcccgaaact ttagattgtt ttaaagaaaa tgtctaacct 240 agttaaaccc ttgtagaatt tactttttct ttttttttcc aatttatcgt ttcggtgtat 300 ctttaaggtt ggaacacaca gtaccctact cttgttagta ggtcctcccg ttggacggct 360 tggaagaaaa tactgttgac ctataattcc tctcagcgtt cccgaaactt tagattgttt 420 taaagaaaat gtctaaccta gttaaaccct ttacaggtcg ttcttctact gttacggaac 480 aggttgggag ttcgaataat aacactctta tcagtgagat tttctccgag aaggccatta 540 aagaaatggc ttctgaatgc aaactcggaa tgtatacaaa tttgagctct gataagatgt 600 ttaattatat cgatctcgtt ccaaaaacac agatgtctaa gttaatatct tggactaaat 660 ctgaatatga acaaggcaaa gtaccgtcca caggcgttct tagtatccct agagtactct 720 tatttattgt tagaacagtt tcatccagtg tttcaggttc tattactgtc aggctatgtg 780 actctggcgt gattgctaca tctggtggcc ttgattccat agataatcaa gagtgcaccg 840 tgcagttgtc cgcccttccc gctcttatag ctctttcgcc gagctatgat tgcccgatgg 900 aggtcctagg tggcaataaa ggcagaaaca gatgttttgg actggtcact caattaaatg 960 gagtcgtggg tgttactgga accgtcgcta tgacgcatgc ttattggaat gcttccttta 1020 aggttaagcc gaataactat aaaagttatt ctccaagaca tgtgtctgtc accgcattcg 1080 atagacttca ggcttatggt aagaaagagc ttaaacaata tattaagaac atttctaacc 1140 agaatgtgga tcatggtctt ttgctcggtt caaattcgaa tttttccaat gacaatgtta 1200 ttacatctgt agaagaatta gacgagtctc cggttaatga tagtaaaccg aagattgcta 1260 tgtccgccaa atctatcgct ggagttccag cttcagcccc taaaccccgt agataatcgg 1320 ataacttcta atgtgattgc ttaaacagct acatggatag gagaccacgg acagccgtta 1380 ggatcagcga tcgcctgctt ctgtagggtt caattcccta tgttcagaac gtcgtggtga 1440 gataggtcct ccgtggaggt tatttgaagt gtagtttgtt tggttgtcgt gttagaagtc 1500 taacataact ttctcatgtc tttgacgtga gtatttcata ttatatataa atatttacac 1560 tatgtcaaca cctggaaccg ttaagatgac tagagctcaa aggcgagcag ccgctagacg 1620 tgctgctaag cctcagatta ataagcgcat ccaaccggtg attgttgaac cgcctacttc 1680 tggcttaggt agagccatta aggcgttagg aggacatact attactaagt gggagaccag 1740 ttgccctgag atcaaagcca aaagctcgat tcaaattacc atacccttgc cttcagaact 1800 ctcttccgag aggaataaag ttctgaaagt ggggcgtgtg cttctttggc tcggcttgct 1860 tcccagtatc aatgggcaag ttaaggcttg tgttactcag actaatcctg ttcccggcgc 1920 ggctttccaa tccgctttgg cgattgctga ttcctctaag gaggtcgtct cggctatgta 1980 cgtagatatc ttcaaaggca ttaccattga agatttcgtc aatgatttgg cgatctacgt 2040 gtactccgcc gttgatgttg ccgctaagga cataattgtg cacctggaag ttgaacacgt 2100 caggcctgtg cttgacgatt atttcacccc actgcattag ttagctacct tgctgccagt 2160 cataactggc ccctcgcacc gggtaatgtg cgtctgggaa gatatccggc ctgctaggtt 2220 atagccccgt gacagggtta aatgtttgtt ctaaccgttt caataaacgg tagtcgtggt 2280 tgacacgctg agacctttac caagtgtctc aagacgtcta tactggttac tccttgccgg 2340 ttgcgagaat catcacacat agtgtgaatc gaggattcgg gcgttgccaa tcacataagt 2400 gattggtggt cataaaggag acca 2424 //