Dbfetch
ID AB432911; SV 1; linear; genomic RNA; STD; VRL; 3228 BP. XX AC AB432911; XX DT 03-AUG-2008 (Rel. 96, Created) DT 27-JAN-2009 (Rel. 99, Last updated, Version 3) XX DE Grapevine virus E genes for replicase, hypothetical protein, movement DE protein, coat protein, putative nucleic acid binding protein, partial and DE complete cds, strain: TvP15. XX KW . XX OS Grapevine virus E OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Trivirinae; Vitivirus. XX RN [1] RP 1-3228 RA Nakaune R., Nakano M.; RT ; RL Submitted (01-APR-2008) to the INSDC. RL Contact:Ryoji Nakaune National Institute of Fruit Tree Science; Akitsu RL 301-2, Higashihiroshima, Hiroshima 739-2494, Japan XX RN [2] RX DOI; 10.1007/s00705-008-0188-5. RX PUBMED; 18784974. RA Nakaune R., Toda S., Mochizuki M., Nakano M.; RT "Identification and characterization of a new vitivirus from grapevine"; RL Arch. Virol. 153(10):1827-1832(2008). XX DR MD5; a6e3660fc0e177bccca3bbd089fa1ff3. XX FH Key Location/Qualifiers FH FT source 1..3228 FT /organism="Grapevine virus E" FT /host="Vitis labruscana cv. Pione OKY-P15" FT /strain="TvP15" FT /mol_type="genomic RNA" FT /country="Japan:Hiroshima" FT /db_xref="taxon:516956" FT CDS <1..826 FT /codon_start=2 FT /transl_table=1 FT /product="replicase" FT /db_xref="GOA:B3Y536" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:B3Y536" FT /protein_id="BAG68229.1" FT /translation="SHAVLCKFGPILRKTEAQLRAILPPHVLIFSQKNYDDLNTWSKRY FT FDDFSGTDSDYEAFDRSQDGAILSFEICLLKHFLWPEELIEEYKTLKLMMGCQLGDLAV FT MRFSGEFGTFFFNTMCNMAFTYLRYFIGPNQPIAFAGDDMVAPGQLIVNNTMSSILNQL FT ELKAKVNYSDSPLFCGWRMSPYGIVKDPNLLLDRLEMKKAEGKLEDCLANYALEASYGY FT RLSEHLCELNIDLDAFQELIRKIVMLKGKLPKQIASLFDDSDDIISSDEDLE" FT CDS 833..1408 FT /codon_start=1 FT /transl_table=1 FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:B3Y537" FT /protein_id="BAG68230.1" FT /translation="MQVRQLVRSKFDSFTLANKLNRLILEEVALEPELFNPLYFLENED FT QRTLLLNQLVWQLSTSPDSEKLCVFRVQQIDRLACVAYDFDSSSIREIFLYSNFSQHNL FT GELYKFIGCEYLDSCYISKSGEKCTLVTQSGNRVSIDVPLDNIVGMIRRLETLCVVIKP FT ASPKLINAPYMFHGKSSPYKNAPPLPLG" FT CDS 1429..2235 FT /codon_start=1 FT /transl_table=1 FT /product="movement protein" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:B3Y538" FT /protein_id="BAG68231.1" FT /translation="MERAEIKAFTVKNRKNGLENFKEMRAVIDKGKVYDEELLDKLFGK FT STVLKSSVCSEVFVVNGKVCTEIELVAEGVTDGIEKEKTPFMHVGCIVIGFMSLARSSS FT GTYKVVIQDDRLKGENKNICAFKFSAQDKVAAFADFPDYCLAVEDLCSGFSIRVLIESE FT DTGFEDNAHPLAINIIGICKFLDDTLETKMIIKRHGKHMYQRICATEVLDPNIGTLQEN FT PTALIDDALMSDVRKAIEKANGVKSDPIRSHDRVRGKDPGIHSRTH" FT CDS 2156..2755 FT /codon_start=1 FT /transl_table=1 FT /product="coat protein" FT /db_xref="GOA:B3Y539" FT /db_xref="InterPro:IPR008879" FT /db_xref="UniProtKB/TrEMBL:B3Y539" FT /protein_id="BAG68232.1" FT /translation="MESKAIRSALMTVFAAKIPGFTAEPTNPEQVSMNNNILANLFGNI FT AIIGTSASVLSYPISVPCYNLESGRIFGAETVGEPLKVAQLVMYMIAVRNSTVDPPLAN FT LTLRQMCTPFAPEAYLFLRTAASSKIYTQLARKMTRIGNKEPQVVFDFAKGLPLSSLTR FT SEASCIQVMHQRLFRTEGAKAVFDAQSQVGESSVEV" FT CDS 2773..3123 FT /codon_start=1 FT /transl_table=1 FT /product="putative nucleic acid binding protein" FT /db_xref="InterPro:IPR008891" FT /db_xref="UniProtKB/TrEMBL:B3Y540" FT /protein_id="BAG68233.1" FT /translation="MGSAYLGESRSAAKRRAVRYGRCYCCGRLECNGNVHTTISQDQVK FT QAIRTPATRFITENEGNYKNAAINLALSDLVRMGKSEYPYKFKYNKAPMGMRSPEETPE FT FYFWNDSDFNAT" XX SQ Sequence 3228 BP; 949 A; 606 C; 792 G; 881 T; 0 other; ctcccatgct gttttatgca aattcgggcc aattctgaga aaaactgagg ctcaattgag 60 ggcgatcttg ccaccacatg tgttgatatt ttctcaaaag aattatgatg atctcaacac 120 ctggagtaag aggtacttcg atgactttag tggcacagat agcgattatg aagcttttga 180 cagatcacaa gatggtgcta tcttatcttt cgagatatgt ctgctgaagc actttttgtg 240 gcctgaagag ctcatagaag agtacaagac tctgaaactg atgatgggtt gtcaattggg 300 cgatttggct gtgatgaggt tctcggggga atttggcaca ttcttcttta atacaatgtg 360 caacatggcc ttcacctact taaggtattt cataggaccg aatcaaccca tagcatttgc 420 tggggatgac atggtggcac caggccaact cattgtaaac aataccatga gctccatttt 480 gaaccaactt gaacttaaag caaaggtgaa ttacagtgat tcacctttat tctgtggttg 540 gagaatgagc ccatatggta ttgtcaagga ccctaatcta ttactggata ggctggagat 600 gaaaaaggct gaaggtaagc tggaagactg tttggccaac tatgcccttg aggcaagtta 660 cggttacagg ttaagcgaac acctttgtga gctgaacata gatcttgacg ccttccagga 720 attgattagg aagatagtga tgctcaaagg aaaattgcca aagcaaatag catcactatt 780 cgatgattct gatgatataa taagctctga tgaggactta gaatagcagt agatgcaggt 840 aaggcagcta gttaggagta agtttgatag tttcacttta gccaataaat tgaataggtt 900 aatactagag gaggtagctt tagagcctga actgtttaac ccactgtact tcttagaaaa 960 tgaggatcag cgcactttac tgttaaacca attggtttgg cagttaagta ccagtcctga 1020 ttcagagaag ttatgtgtgt ttagggttca gcagatagat aggttagcct gtgtagccta 1080 tgatttcgat agtagcagca ttagagagat tttcttatat agtaatttta gtcagcataa 1140 tctgggtgag ctctacaagt ttattggatg tgaatacctc gattcctgct acatttcaaa 1200 atcgggtgaa aagtgcacat tggtgacgca gtcaggaaat agggtgagca ttgatgttcc 1260 actggataat atagtgggga tgattaggag attggagact ctgtgcgtgg ttattaaacc 1320 agcctcgcca aaacttatca atgcccctta tatgtttcac ggtaaatcat caccctacaa 1380 gaatgcacct cctttacccc ttggctaagc taccgccact aaactgaaat ggagcgcgca 1440 gagatcaaag cattcacggt gaaaaaccgc aagaatggtc tcgagaattt taaggagatg 1500 cgggctgtga tcgacaaagg gaaggtgtat gacgaagagc tattggacaa gcttttcgga 1560 aaatccaccg tcttaaagtc gtctgtgtgt agcgaggtgt tcgtggtcaa tggcaaagtc 1620 tgcactgaga tagagcttgt ggctgagggt gtgacagatg ggatagaaaa ggagaaaaca 1680 ccattcatgc atgtggggtg catagtcata ggtttcatga gtctggcaag atcttcatca 1740 ggcacataca aggtggtcat acaggatgat aggctcaaag gggagaacaa gaacatttgt 1800 gcattcaaat tctctgctca ggataaagta gcagcatttg ctgatttccc cgactattgc 1860 ctcgctgttg aagatctttg ctcaggtttc tccattaggg tgttgattga gagtgaggat 1920 actgggttcg aggacaatgc tcaccctttg gccataaata tcattggtat atgcaagttc 1980 ctagatgata cacttgagac gaagatgatc attaaaaggc atgggaagca tatgtaccag 2040 cgaatatgtg ccactgaggt cctagaccca aacataggga ctttgcaaga gaatccaacc 2100 gcgcttattg atgatgcact tatgtctgac gtgcggaagg caattgagaa agccaatgga 2160 gtcaaaagcg atccgatccg ctctcatgac cgtgttcgcg gcaaagatcc cgggattcac 2220 agcagaaccc actaacccag agcaggtgtc catgaataat aatatattag ctaatttgtt 2280 tgggaatata gcaataatag gtactagtgc gtcagtcttg tcttacccaa tatctgtccc 2340 ttgttataac ctggagtctg gtcgtatttt tggagctgaa acggtgggtg aaccactcaa 2400 ggtggcccaa ttggtgatgt acatgatagc agtgaggaat tcaactgtag atcctcctct 2460 tgctaatctg actctacgtc aaatgtgcac accatttgcc ccagaggcat acctcttctt 2520 gaggactgct gcaagctcaa aaatatacac tcagctggct aggaaaatga caaggatagg 2580 taataaagag ccgcaagtgg tctttgactt tgcaaaaggt ctgcccttaa gctccttaac 2640 tcgaagtgag gctagttgca tccaagtgat gcaccagagg ctctttcgaa cagaaggcgc 2700 caaggcagta tttgatgctc agtcacaggt tggtgaaagc tcggtggaag tctagactta 2760 gtcaattaag gtatgggtag tgcttatcta ggtgagtctc gtagtgctgc aaaacgtaga 2820 gcggtcaggt atggtaggtg ttattgttgt ggtagattag aatgtaatgg taatgtgcac 2880 acaactatat cacaagatca agttaagcag gccataagaa ccccggcgac taggtttata 2940 accgaaaacg agggtaatta caaaaatgct gcaatcaact tggctcttag tgatctagta 3000 agaatgggga agtctgagta cccatataag tttaaataca ataaagctcc aatgggtatg 3060 cgcagcccag aggaaacgcc agaattctat ttctggaatg atagtgattt caacgcaact 3120 taggcgtgtt ggttgattga ccctactaat agtcaatctt ctctggttag cttagccccc 3180 agggaatact gtcatagggc gaaataacag aaacggtcat accgtttt 3228 //