ID AB377113; SV 1; linear; genomic DNA; STD; VRL; 2746 BP. XX AC AB377113; XX DT 05-FEB-2008 (Rel. 94, Created) DT 16-FEB-2011 (Rel. 107, Last updated, Version 4) XX DE Tomato leaf curl Philippines virus - Los Banos:L3 DNA, segment A, complete DE sequence. XX KW . XX OS Tomato leaf curl Philippines virus - Los Banos:L3 OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2746 RA Matsuda N., Bajet B.N., Sharma P., Ikegami N.; RT ; RL Submitted (24-JAN-2008) to the INSDC. RL Contact:Naoki Matsuda Graduate School of Agricultural Science, Tohoku RL University; 1-1, Tsutsumidori-Amamiyamachi, Aobaku, Sendai, Miyagi RL 981-8555, Japan XX RN [2] RX DOI; 10.1007/s00705-008-0065-2. RX PUBMED; 18357407. RA Matsuda N., Sharma P., Bajet N.B., Ikegami M.; RT "Molecular characterization of a new strain of tomato leaf curl Philippines RT virus and its associated satellite DNAbeta molecule: further evidence for RT natural recombination amongst begomoviruses"; RL Arch. Virol. 153(5):961-967(2008). XX RN [3] RX DOI; 10.1007/s00705-010-0837-3. RX PUBMED; 21053032. RA Sharma P., Matsuda N., Bajet N.B., Ikegami M.; RT "Molecular analysis of new isolates of Tomato leaf curl Philippines virus RT and an associated betasatellite occurring in the Philippines"; RL Arch. Virol. 156(2):305-312(2011). XX DR MD5; e2805d5c8da19c58bc5ac8f276021564. XX FH Key Location/Qualifiers FH FT source 1..2746 FT /organism="Tomato leaf curl Philippines virus - Los FT Banos:L3" FT /segment="A" FT /mol_type="genomic DNA" FT /country="Philippines:Laguna" FT /isolation_source="tomato" FT /db_xref="taxon:499613" FT CDS 145..489 FT /codon_start=1 FT /transl_table=1 FT /gene="V2" FT /product="pre-coat protein" FT /db_xref="GOA:B0I522" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:B0I522" FT /protein_id="BAG06855.1" FT /translation="MWDPLVHPFPESLHGFRCMLAIKYLQSLQNKYSPDTVGHEFLKDF FT ICILRSKNYAEAFNRYSNVVANVYNTSEAQLRESVQSPCLCPHCPRHVLQAKVMDLQAH FT VSQAQDVQNV" FT CDS 305..1081 FT /codon_start=1 FT /transl_table=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:B0I523" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:B0I523" FT /protein_id="BAG06856.1" FT /translation="MPKRSIDTVTSLPMSITRRRLNYGSQYSLPASVPTVPDMSYKRRS FT WTYRPMFRKPKMYRMYRSRDVPRGCEGPCKVQSYEQRHDIAHVGKVICVSDVTRGNGLT FT HRVGKRFCVKSVYVLGKVWMDENIKTKNHTNTVMFFLVRDRRPYGTPQDFGQVFNMYDN FT EPSTATVKNDNRDRYQVLRKFQATVTGGQYASKEQAIVKRFMKINNHVTYNHQEAAKYD FT NHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN" FT CDS complement(1078..1479) FT /codon_start=1 FT /transl_table=1 FT /gene="C3" FT /product="C3 protein" FT /db_xref="GOA:B0I524" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:B0I524" FT /protein_id="BAG06857.1" FT /translation="MDSRTGEPITAAQAENGVYTWTITNPLYFKISQHDKMPFLKNHDI FT ITVQIQFNHNLRKALGIHQCFLICKIWTHLHPQTWRFLRVFKYQCMKYLYSLGVISINN FT VIRAIKHVLYAVIQTIDVQISHIIKFNIY" FT CDS complement(1220..1627) FT /codon_start=1 FT /transl_table=1 FT /gene="C2" FT /product="C2 protein" FT /db_xref="GOA:B0I525" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:B0I525" FT /protein_id="BAG06858.1" FT /translation="MQNSSPSHNHCTQIPIKVQHKIAKRRPIRRRRIDLPCGCSYYLGL FT NCASYGFSHRGTHHCSSGREWRIYLDDNKSPLFQDIPTRQDAVLEKPRHHNSTDTVQPQ FT PEESVGNSSMFSDLQNLDSFTSSDLAFLKSI" FT CDS complement(1533..2615) FT /codon_start=1 FT /transl_table=1 FT /gene="C1" FT /product="replication-associated protein" FT /db_xref="GOA:B0I526" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:B0I526" FT /protein_id="BAG06859.1" FT /translation="MAPPRPFKINAKNYFLTYPQCSLTKEDALSQLQNLNTPTNKKFIK FT ICRELHEDGSPHLHVLIQFEGKYQCQNQRFFDLVSPTRSAHYHPNIQGAKSSSDVKSYI FT DKDGDTLEWGEFQVDGRSARGGQQSANDAYAKAINAGSKSEALNVIRELAPKDFVLQFH FT NLSANLDRIFAPPLEVFVSPFPSSSFNQVPKELEEWVSENVRDAAARPWRPKSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDSWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEDKNSPLKDWALKNAEFITIAQPL FT YSNTHQSPTQNSEAATNTQA" FT CDS complement(2168..2458) FT /codon_start=1 FT /transl_table=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:B0I527" FT /protein_id="BAG06860.1" FT /translation="MGALISTCLSNSRENTSARISDSSTWYPQPGQHITIRTFRELNQA FT PTSSPISTRTETPSNGVSFRSMEDLQEGVNNRPMTLTPKQLTQEVSRRLLM" XX SQ Sequence 2746 BP; 732 A; 533 C; 601 G; 880 T; 0 other; accgtgggcc gcgcaaattt tttttttata ttgggcctaa tggaccttta ggatgtcggt 60 ctcgaccaat ggaaacgttc cctcatcgct tatttattaa ttggtcccct atttaaccct 120 tggtggctac gtttttcttt aaaaatgtgg gatcctctgg tacatccctt tcctgaaagc 180 ttacacggct tcagatgtat gcttgccatc aaatatcttc agagcttaca gaataaatat 240 tctcctgata ctgttgggca tgagtttttg aaagatttta tatgcatatt gcgaagtaag 300 aattatgccg aagcgttcaa tagatacagt aacgtcgttg ccaatgtcta taacacgtcg 360 gaggctcaat tacgggagtc agtacagtct ccctgcctct gtccccactg tcccagacat 420 gtcttacaag cgaaggtcat ggacttacag gcccatgttt cgcaagccca agatgtacag 480 aatgtataga agccgtgatg ttcctcgtgg gtgtgaaggc ccatgtaagg ttcagtctta 540 tgaacagcgt catgatatag cccatgtggg taaggtcata tgtgtgtctg atgttactcg 600 tggtaatggg ctcacacatc gtgttggaaa gaggttttgt gtaaagtctg tgtatgtgtt 660 ggggaaggtc tggatggatg agaacatcaa gactaagaat cacactaaca ctgtcatgtt 720 ttttttagtt cgtgatagga gaccctatgg gactccccag gattttggtc aggtttttaa 780 catgtatgat aatgagccta gtactgcaac tgttaaaaat gataatagag atcgatatca 840 agttcttcgt aaatttcaag ctaccgtgac tggaggtcag tatgcaagca aggagcaagc 900 aatagtcaag aggttcatga agattaacaa tcatgttact tacaatcatc aagaggctgc 960 gaagtatgat aaccatacag agaacgcttt actgttgtat atggcttgta ctcatgctag 1020 taacccagtg tatgctacgt tgaaaatcag aatctatttt tatgattctg ttcagaatta 1080 ataaatattg aattttatta tatgagaaat ttgtacatct attgtttgaa ttacagcgta 1140 cagtacatgc ttgatagccc taattacatt gtttatgcta ataactccta aactatacaa 1200 atacttcata cactgatatt taaatactct taagaaacgc caagtctgag gatgtaaatg 1260 agtccagatt ttgcagatca gaaaacattg atgaattccc aacgctttcc tcaggttgtg 1320 gttgaactgt atctgtactg ttatgatgtc gtggtttttc aagaacggca tcttgtcgtg 1380 ttgggatatc ttgaaataaa ggggatttgt tatcgtccag gtatatacgc cattctctgc 1440 ctgagctgca gtgatgggtt cccctgtgcg agaatccata cgaagcacaa ttaagtccta 1500 aatagtaaga gcagccgcaa ggaagatcaa ttctacgcct gcgtattggt cgccgcttcg 1560 ctattttgtg ttggactttg atgggtattt gagtacaatg gttgtgcgat ggtgatgaat 1620 tctgcattct ttagcgccca gtctttgagt ggagaatttt tatcctcatc caagtactct 1680 ttatacgacg acgtaggtcc tggattgcag aggaagattg ttgggattcc acctttaatt 1740 tgaattggtt tcccgtactt cgtgttgctt tgccagtctc tttgggcccc cataaactct 1800 ttaaaatgct ttaggtagtg ggggtcgacg tcatcaatga cgttgtacca cgaatcatta 1860 ctgtagacct ttggactgag gtccagatgt ccacataaat aattatgtgg tcccagagat 1920 ctagcccaca tcgtcttccc cgttcgacta tcgccctcta ttacaatact tttaggtctc 1980 caaggccgcg cagcggcatc ccttacattc tcggacaccc attcttcaag ttcttttgga 2040 acttgattga aagatgaaga aggaaaagga ctaacaaaaa cctctaaagg aggtgcaaaa 2100 atcctatcta aatttgcact taaattatga aattgtaaaa caaaatcttt tggtgctaat 2160 tccctaatta cattaagagc ctccgactta cttcctgcgt taattgcttt ggcgtaagcg 2220 tcattggccg attgttgacc ccctcttgca gatcttccat cgacctgaaa ctcaccccat 2280 tcgagggtgt ctccgtcctt gtcgatatag gacttgacgt cggagcttga tttagctccc 2340 tgaatgttcg gatggtaatg tgctgacctg gttggggata ccaagtcgaa gaatcgctga 2400 ttctggcact ggtattttcc ctcgaattgg ataagcacgt ggagatgagg gctcccatct 2460 tcgtgtaatt ctcgacagat ctttatgaat tttttatttg ttggtgtatt taggttttgt 2520 aattgggaaa gtgcatcttc tttagtaaga gagcactgtg gataagtgag gaaataattt 2580 ttggcattta ttttaaatgg tcttggagga gccattgact tggtcaatcg gtgtctctac 2640 taattctcta gcaatcggtg tattggtgtc ctatatatag ttagacacca aatggcaaaa 2700 gtgtaatttt tttatgggct tacaagcggc ccacgactat aatatt 2746 //