ID AB368499; SV 1; linear; genomic RNA; STD; VRL; 3364 BP. XX AC AB368499; XX DT 16-NOV-2008 (Rel. 97, Created) DT 18-JAN-2010 (Rel. 103, Last updated, Version 2) XX DE Cucumber mosaic virus isolate PF segment RNA1, complete sequence. XX KW . XX OS Cucumber mosaic virus (cucumber mosaic cucumovirus) OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-3364 RA Maoka T.; RT ; RL Submitted (14-NOV-2007) to the INSDC. RL Contact:Tetsuo Maoka National Agricultural Research Center for Hokkaido RL Region, Potato Production and Protection Research Team; Hitsujigaoka, RL Toyohira, Sapporo, Hokkaido 062-8555, Japan XX RN [2] RX DOI; 10.1007/s11262-009-0414-6. RX PUBMED; 19866353. RA Maoka T., Saito-Hayano Y., Iwasaki M., Yoshida K., Masuta C.; RT "Mixed infection in tomato to ensure frequent generation of a natural RT reassortant between two subgroups of Cucumber mosaic virus"; RL Virus Genes 40(1):148-150(2010). XX DR MD5; 0455c61479715e948117d2bfb750f799. DR RFAM; RF01084; TLS-PK3. XX FH Key Location/Qualifiers FH FT source 1..3364 FT /organism="Cucumber mosaic virus" FT /segment="RNA1" FT /host="Solanum lycopersicum" FT /isolate="PF" FT /serotype="P" FT /mol_type="genomic RNA" FT /country="Japan:Hokkaido, Kameda, Ohno-cho" FT /collection_date="1982" FT /note="subgroup I" FT /db_xref="taxon:12305" FT CDS 98..3079 FT /codon_start=1 FT /transl_table=1 FT /gene="1a" FT /product="1a protein" FT /db_xref="GOA:B6VQB1" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR021002" FT /db_xref="InterPro:IPR022184" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:B6VQB1" FT /protein_id="BAG84171.1" FT /translation="MATSSFNINELVASHGDKGLLATALVDKAAHEQLEEQLQHQRRGR FT KVYVRNVLSVKDSEVIRNRYGGKYDLHLTQQEFAPHGLAGALRLCETLDWLDSFPSSGL FT RQDLVLDFGGSWVTHYLRGHNVHCCSPCLGIRDKMRHTERLMNMRKIILNDPQQFDGRQ FT PDFCTHPAADCKVQAHFAISIHGGYDMGFRGLCEAMNAHGTTILKGTMMFDGAMMFDDQ FT GIIPELNCQWRKIRNAFSETEDVTPLVGKLNSTVFSRVRKFKTLVAFDFINESTMSYVH FT DWENIKSFLTDHTYSYKGMTYGIERCVINAGIMTYKIIGVPGMCPPELIRHCIWFPSIK FT DYVGLKIPASQDLVEWKTVRILTSTLRETEEIAMRCYNDKKAWMEQFKVILGVLSAKSS FT TIVINGMSMQSGERIDINDYHYIGFAILLLSKMKYEQLGKMYDMWNASSISKWFAALTR FT PLRVFFSSAVHALFPTLRPREEKEFLIKLSTFVTFNEECSFDGGEEWDVISSAAYVATQ FT AVTDGKVLAAQKAEKLAEKLAQPVDEGSDSPEEPSSTPDDTADVCGKEQEVSELDSLSA FT QTRSPITRVAERATAMLEYAAYEKQLHDTTVSHLERIWNMAGGDGKRNSLEGNLKFVFD FT TYFTVDPMVNIRFSSGRWMRPVPDGTVYSVGYNEPGLGPKSDGELFIVNRECVICNSES FT LSAVTRSLQAPTGTISQVDGVAGCGKTTAIKSIFEPSTDMIVTANKKSAQDVRMALFKS FT SDSKEACAFVRTADSVLLNECPTVSRVLVDEVVLLHFGQLCAVMSKLKAVRAICFGDSE FT QIAFSSRDASFDMRFSKIIPDETSDADTTFRSPQDVVPLVRLMATKALPKGTHSKYTKW FT VSQSKVKRSVTSRAITTVTLVDLDPSRFYITMTQADKASLISRAKEMNLPKDFWNERIK FT TVHESQGISEDHVTLVRLKSTKCDLFKQFSYCLGALTRHKVTFRYEYCGVLNGDLIAEC FT VARA" XX SQ Sequence 3364 BP; 852 A; 744 C; 809 G; 959 T; 0 other; gttttattta caagagcgta cggttcaacc cctgcctcct ctgtaaaact accctttgaa 60 aacctctctt tcttaatctt ttctttgtaa aattcctatg gcgacgtcct cgttcaacat 120 taatgaattg gtagcctccc acggcgataa aggactactc gcgaccgccc tcgttgataa 180 ggcagctcat gagcagctcg aggagcaatt acagcatcaa cgcaggggcc gtaaggtcta 240 cgttcggaac gttctgagcg taaaggattc cgaagttatc cggaatcggt atggaggaaa 300 gtacgacctc catcttaccc agcaggagtt tgctccccac ggcctagctg gtgccctccg 360 cttgtgtgaa actctcgatt ggctagactc tttcccttct tcaggtctgc ggcaggacct 420 cgtcttagac ttcggaggaa gttgggtcac acattacctc cgcggacata acgtacactg 480 ctgttctccc tgtctgggaa tccgtgataa aatgcgccac acggaacgtt taatgaacat 540 gcgcaagatc atcttgaacg atccacaaca gttcgatggt cgacagccgg acttctgcac 600 tcatcctgct gctgattgca aagtacaagc ccactttgct atatctattc atggaggtta 660 tgatatgggc tttagaggat tatgtgaggc aatgaatgct cacggaacca ctattttgaa 720 gggaacgatg atgttcgacg gtgcgatgat gtttgacgac caaggtataa ttcccgaact 780 taattgccag tggaggaaga ttaggaatgc tttctccgaa actgaagacg tcacaccgtt 840 agttggtaaa ctcaattcca cagtattttc tcgcgtgcgt aaattcaaga ctttggtagc 900 tttcgatttc attaacgaat ctactatgtc ttacgttcat gattgggaga atataaaatc 960 ttttctaacg gaccatacct attcttacaa aggaatgacc tacggtattg agcgttgtgt 1020 cattaatgct ggtatcatga cgtataagat catcggagtg cctggaatgt gtccacccga 1080 actcattcga cattgtattt ggttcccctc tattaaagac tatgttggtc taaagattcc 1140 cgcgtcgcag gacttagttg agtggaaaac agtgcgtatt ttaacgtcga cattgcgtga 1200 aactgaagag attgctatga ggtgttacaa tgataagaag gcatggatgg aacaatttaa 1260 ggttatctta ggtgttctat ctgctaaatc atctaccatt gttatcaatg gtatgtccat 1320 gcaatctggt gaacggatag acatcaatga ttatcactac attgggttcg ccattcttct 1380 tctctcaaaa atgaaatatg agcaactagg aaaaatgtat gatatgtgga atgcttcgag 1440 tatttcgaag tggtttgcag cgttgactcg tccgctgcgc gtgtttttct ctagtgctgt 1500 tcatgcgctg ttcccgacct tgagaccccg cgaggaaaaa gaattcctga ttaagctctc 1560 caccttcgta acttttaatg aagagtgctc atttgacggt ggagaggaat gggacgtgat 1620 atcatctgct gcatacgttg ctacacaggc tgttactgat gggaaagttt tggctgcgca 1680 gaaagccgag aagctcgctg agaagcttgc acaacccgta gatgagggat cagacagccc 1740 tgaggagcca tcttcaactc ctgatgatac tgccgacgtt tgtggaaagg agcaagaagt 1800 ttcggaactt gactcattgt cggctcagac acgttccccc atcactagag ttgctgaaag 1860 ggctactgcc atgctggagt acgccgctta tgagaaacag ctacacgaca ccacagtgtc 1920 ccatttggaa cgcatttgga atatggcggg cggtgatggc aagagaaact ccctcgaggg 1980 taatttgaag tttgttttcg acacgtattt cactgtcgac cccatggtga acattcgctt 2040 ttcgtcgggt cggtggatgc gtcctgtgcc tgacggaact gtttactctg ttggttataa 2100 tgaacccgga ttaggtccga agtctgatgg agagcttttc attgtcaata gggagtgcgt 2160 gatatgtaat agcgagtctt tatctgctgt cacacgttct ctccaagctc caactggaac 2220 catcagtcaa gtcgacggag tcgccggttg tgggaaaact acggcaatta aatccatttt 2280 tgagccgtcc actgacatga tcgttaccgc gaataagaag tccgctcaag atgtgcgtat 2340 ggcacttttt aaatcgtcag actctaagga agcgtgcgcc tttgttcgaa cagccgattc 2400 cgtcctactt aatgaatgtc caaccgtgag tagggttttg gttgatgagg tcgtattgct 2460 acattttggt caactgtgtg ctgtcatgtc taaactgaaa gctgtccgag ctatatgttt 2520 tggggattcg gagcagattg ctttttcttc tcgagatgct tcgtttgaca tgcgtttctc 2580 taagattatt cctgatgaga ctagtgatgc ggacactaca ttccgtagtc cacaagacgt 2640 tgtgccgctt gtgcgtttaa tggctacgaa ggcccttccg aaaggaactc attcaaaata 2700 cacgaaatgg gtttctcaat ctaaagtgaa gagatctgtc acatctcgcg ctatcactac 2760 tgtgacattg gttgacttgg atccatccag gttttacatt acgatgactc aggctgataa 2820 ggcttcactg atttcaaggg cgaaagagat gaacttacca aaggatttct ggaatgaaag 2880 gattaaaaca gtacatgagt ctcaaggtat ttctgaagat catgtcacct tggtaagatt 2940 aaagagcaca aaatgtgacc tatttaaaca gttttcatac tgtcttggtg ctttgactag 3000 acacaaggtc acattccgct acgagtactg cggtgttttg aatggcgatt taattgccga 3060 atgtgttgct cgtgcttagc gggctttccc tccttcgggc gggatctgag ttggcggtaa 3120 tctataaacc gtctgaagtc actaaacgat tgtttcggtg aacgggttgt ccatccagct 3180 tacggctaaa atggtcagtc gtggagaaat ccacgccagc agacttacaa gtctctgagg 3240 cgcctttgaa accatctcct aggtttcttc ggaaggactt cggtccgtgt acttctagca 3300 caacgtgcta gtttcagggt acgggtgccc ccccactttc gtgggggcct ccaaaaggag 3360 acca 3364 //