ID AB368496; SV 1; linear; genomic RNA; STD; VRL; 3371 BP. XX AC AB368496; XX DT 05-FEB-2008 (Rel. 94, Created) DT 18-JAN-2010 (Rel. 103, Last updated, Version 2) XX DE Cucumber mosaic virus genomic RNA, segment RNA1, complete sequence, DE isolate: 42CM. XX KW . XX OS Cucumber mosaic virus (cucumber mosaic cucumovirus) OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-3371 RA Maoka T.; RT ; RL Submitted (14-NOV-2007) to the INSDC. RL Contact:Tetsuo Maoka National Agricultural Research Center for Hokkaido RL Region, Potato Production and Protection Research Team; Hitsujigaoka, RL Toyohira, Sapporo, Hokkaido 062-8555, Japan XX RN [2] RA Iwasaki M., Yamamoto T., Inaba T.; RT "Wilt of cucumber plants grafted on squash rootstocks caused by viruses"; RL Bull. Shikoku Natl. Agric. Exp. St 60:1-88(1996). XX RN [3] RX DOI; 10.1007/s11262-009-0414-6. RX PUBMED; 19866353. RA Maoka T., Saito-Hayano Y., Iwasaki M., Yoshida K., Masuta C.; RT "Mixed infection in tomato to ensure frequent generation of a natural RT reassortant between two subgroups of Cucumber mosaic virus"; RL Virus Genes 40(1):148-150(2010). XX DR MD5; d90b350253a216e94c2dcad8f1b28952. DR RFAM; RF01084; TLS-PK3. XX FH Key Location/Qualifiers FH FT source 1..3371 FT /organism="Cucumber mosaic virus" FT /segment="RNA1" FT /isolate="42CM" FT /serotype="Y" FT /mol_type="genomic RNA" FT /country="Japan:Kagawa, Toyonaka" FT /isolation_source="cucumber" FT /collection_date="15-Oct-1986" FT /note="subgroup I" FT /db_xref="taxon:12305" FT CDS 97..3078 FT /codon_start=1 FT /transl_table=1 FT /gene="1a" FT /product="1a protein" FT /db_xref="GOA:B0I4V9" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR021002" FT /db_xref="InterPro:IPR022184" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:B0I4V9" FT /protein_id="BAF93465.1" FT /translation="MATSSFNINELVASHGDKGLLATALVDKAAHEQLEEQLQHQRRGR FT KVYVRNVLSVKDSEVIRNRYGGKYDLHLTQQEFAPHGLAGALRLCETLDCLDSFPSSGL FT RQDLVLDFGGSWVTHYLRGHNVHCCSPCLGIRDKMRHTERLMNMRKIILNDPQQFDGRQ FT PDFCTHPAADCKVQAHFAISIHGGYDMGFRGLCEAMNAHGTTILKGTMMFDGAMMFDDQ FT GVIPELNCQWRKIRNAFSETEDVTPLVGKLNSTVFSRVRKFKTLVAFDFINESTMSYVH FT DWENIKSFLTDQTYSYKGMTYGIERCVINAGIMTYKIIGVPGMCPPELIRHCIWFPSIK FT DYVGLKIPASQDLVEWKTVRILTSTLRETEEIAMRCYNDKKAWMEQFKVILGVLSAKSS FT TIVINGMSMQSGERIDINDYHYIGFAILLHTKMKYEQLGKMYDMWNASSISKWFAALTR FT PLRVFFSSAVHALFPTLRPREEKEFLIKLSTFVTFNEECSFDGGEEWDVISSAAYVATQ FT AVTDGKVLAAQKAEKLAEKLAQPVDEVSDSREVPSSTPDDTADVCGKEQEVSELDSLSA FT QTRSPITRVAERATAMLEYAAYEKQLHDTTVSNLKRIWNTAGGDDKRNSLEGNLKFVFD FT TYFTVDPMVNIHFSTGRWMRPVPEGIVYSVGYNERGLGPKSDGELFIVNSECVICNSES FT LSAVTRSLQAPTGTISQVDGVAGCGKTTAIKSIFEPSTDMIVTANKKSAQDVRMALFKS FT SDSKEACTFVRTADSVLLNECPTVSRVLVDEVVLLHFGQLCAVXSKLKAVRAICFGDSE FT QIAFSSRDASFDMRFSKIIPDETSDADTTFRSPQDVVPLVRLMATKALPKGTHSKYTKW FT VSQSKVKRSVTSRSIASVTLVDLDASRFYITMTQADKASLISRAKEMNLPKTFWNERIK FT TVHESQGISEDHVTLVRLKSTKCDLFKQFSYCLVALTRHKVTFRYEYCGVLNGDLIAEC FT IARA" XX SQ Sequence 3371 BP; 850 A; 737 C; 815 G; 968 T; 1 other; gttttattta caagagcgta cggttcaacc cctgcctcct ctgtaaaact accctttgaa 60 aacctctctt ttctaatctt ttctttgtaa attcctatgg cgacgtcctc gttcaacatc 120 aatgaattgg tagcctccca cggcgataaa ggactactcg cgaccgccct cgttgataag 180 gcagctcatg agcagctcga ggagcaatta cagcatcaac gtaggggccg taaggtctac 240 gttcggaatg ttctgagcgt aaaggattcc gaagttattc ggaatcggta tggaggaaag 300 tacgacctcc atcttaccca gcaggagttt gctccccacg gcctagctgg tgccctccgc 360 ttgtgtgaaa ctctcgattg tctagactct ttcccttctt caggtctgcg gcaggacctc 420 gtcttagact tcggaggaag ttgggtcaca cattacctcc gcggacacaa cgtacactgc 480 tgttctccct gtttgggaat ccgtgataaa atgcgccaca cggaacgttt aatgaacatg 540 cgcaagatca tcttgaacga tccacaacag ttcgatggtc gacagccgga cttctgcacc 600 catcctgctg ctgattgcaa agtacaagcc cactttgcta tatctattca tggaggttat 660 gatatgggct ttagaggatt gtgtgaggca atgaatgctc acggaaccac cattttgaag 720 ggaacgatga tgttcgatgg tgcgatgatg tttgacgacc aaggtgtaat tcctgaactt 780 aactgtcagt ggaggaagat taggaatgct ttctctgaaa ctgaagacgt cacaccgtta 840 gttggtaaac tcaattccac agtattttct cgtgtgcgta aattcaagac tttggtagct 900 ttcgatttca ttaacgaatc tactatgtct tatgttcatg attgggagaa tataaaatct 960 tttctaacgg accagaccta ttcttacaaa ggaatgactt acggtattga gcgttgtgtc 1020 attaatgctg gtatcatgac gtacaagatc atcggagtac ctgggatgtg tccacccgaa 1080 ctcattcgac attgtatttg gttcccctct attaaagact acgtcggtct aaagattccc 1140 gcgtcacagg atctagttga gtggaaaaca gtgcgtattt taacgtcaac attgcgtgaa 1200 actgaagaga ttgctatgag gtgttacaat gataagaagg cgtggatgga acaatttaag 1260 gtcatcttag gtgttctatc tgctaaatca tctaccattg ttatcaatgg tatgtccatg 1320 caatctggtg aacggataga catcaatgat tatcactaca ttgggttcgc cattcttctt 1380 cacacaaaaa tgaagtatga gcagctggga aaaatgtatg atatgtggaa tgcttcgagt 1440 atttcgaagt ggtttgcagc gttgactcgt ccgctgcgtg tatttttctc tagtgctgtc 1500 cacgcgctgt tcccgacctt gagaccccgc gaggaaaaag aattcctgat taagctctcc 1560 accttcgtga cttttaatga agagtgctca tttgacggtg gagaggaatg ggacgtgata 1620 tcatctgctg catacgttgc tacacaggct gttactgatg ggaaagtttt ggctgcgcag 1680 aaagccgaga agctcgctga aaagcttgca caacccgtgg atgaggtatc agacagccgt 1740 gaggtgccat cttcaacacc cgatgatact gccgatgttt gtggaaagga gcaagaagtt 1800 tcggaacttg actcattatc ggctcagaca cgttccccca tcactagagt tgctgaaagg 1860 gctactgcca tgttggagta cgccgcttat gagaaacagc tacatgacac cacagtgtct 1920 aatttgaaac gtatttggaa tacggcgggc ggtgatgaca agagaaactc cctcgaaggt 1980 aatttgaagt ttgttttcga tacgtatttc actgtcgacc ccatggtgaa cattcacttt 2040 tcgacgggtc ggtggatgcg tcctgtgcct gagggaattg tttactctgt tggttataat 2100 gaacgcggtt taggtccgaa gtctgatgga gagcttttca ttgtcaatag tgagtgtgtg 2160 atatgtaata gcgagtcttt atctgctgtc acacgctctc ttcaagctcc gactggaacc 2220 atcagtcaag tcgatggagt cgctggttgt gggaaaacta ctgcaattaa atccattttt 2280 gagccatcca ctgacatgat cgttaccgcg aataagaagt ccgcccaaga tgtgcgtatg 2340 gcacttttca aatcgtcaga ctctaaggaa gcgtgcacct ttgttcgaac agccgattct 2400 gtcctactta atgaatgtcc gactgtgagt agggttttgg ttgatgaggt cgtattgcta 2460 cactttggtc aattgtgtgc tgttaygtcc aaactgaagg ctgtgcgagc tatatgtttt 2520 ggggattcgg agcaaattgc tttttcttct cgagatgcct cgtttgacat gcgtttctct 2580 aagatcattc ctgatgagac tagtgatgcg gacaccacat tccgtagccc acaagatgtc 2640 gtgccgcttg tgcgtctaat ggctacgaag gcccttccga aaggaactca ttcgaaatac 2700 acgaaatggg tttctcaatc taaagtgaag agatctgtca catcccgttc tattgctagt 2760 gtgacattag ttgacctgga tgcttctagg ttttacatca cgatgactca agctgataaa 2820 gcttcactga tttcgagggc gaaagagatg aacttaccga agaccttttg gaacgaaagg 2880 attaagaccg tacatgaatc tcaaggtatt tctgaagatc acgttacttt ggtaagatta 2940 aagagcacaa agtgtgacct gtttaaacag ttttcttact gtcttgttgc tttgactagg 3000 cacaaggtca ccttccgcta cgagtattgc ggtgtattga atggcgattt gatcgccgaa 3060 tgtattgctc gtgcttagcg gttcccctcc ttcgggcggg atctgagttg gcggtaatct 3120 acaaaccgtc tgaagtcact aaacgttaac ggtcgcgttt acggtgaacg ggttgtccat 3180 ccagcttacg gctaaaatgg tcagtcgtgg agaaatccac gccagtagac ttacaagtct 3240 ctgaggcgcc tttgaaacca tctcctaggt ttcttcggaa ggacttcggt ccgtgtactt 3300 ctagcacaat gtgttagttt caggggtacg ggtgcccccc cactttcgtg ggggcctcca 3360 aaaggagacc a 3371 //