Dbfetch
ID AB368448; SV 1; circular; genomic DNA; STD; VRL; 2739 BP. XX AC AB368448; XX DT 01-DEC-2007 (Rel. 94, Created) DT 18-JAN-2009 (Rel. 99, Last updated, Version 3) XX DE Tomato leaf curl New Delhi virus-[cucumber:Thailand] DNA, complete DE sequence, segment: A, isolated from muskmelon. XX KW . XX OS Tomato leaf curl New Delhi virus-[cucumber:Thailand] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2739 RA Ito T., Ikegami M.; RT ; RL Submitted (13-NOV-2007) to the INSDC. RL Contact:Masato Ikegami Tohoku University, Agricultural Science; 1-1, RL amamiya-machi,tsutsumi-dori,aoba-ku, Sendai, Miyagi 981-8555, Japan XX RN [2] RX DOI; 10.1007/s00705-007-0029-y. RX PUBMED; 18193155. RA Ito T., Sharma P., Kittipakorn K., Ikegami M.; RT "Complete nucleotide sequence of a new isolate of tomato leaf curl New RT Delhi virus infecting cucumber, bottle gourd and muskmelon in Thailand"; RL Arch. Virol. 153(3):611-613(2008). XX DR MD5; d71234de5a52cdab9a36c2a69d1543d5. XX FH Key Location/Qualifiers FH FT source 1..2739 FT /organism="Tomato leaf curl New Delhi FT virus-[cucumber:Thailand]" FT /segment="A" FT /mol_type="genomic DNA" FT /country="Thailand" FT /isolation_source="muskmelon" FT /note="Tomato leaf curl New Delhi virus - [Cucumber FT Thailand]" FT /db_xref="taxon:452661" FT CDS 120..458 FT /codon_start=1 FT /transl_table=1 FT /gene="AV2" FT /product="AV2 protein" FT /db_xref="GOA:A9EEH9" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:A9EEH9" FT /protein_id="BAF93941.1" FT /translation="MWDPLLHEFPESVHGLRCMLAVKYLQQIEKTYSPDTVGYDLVRDL FT ILVLRAKNYGEATSRYHHFNARIEGTPTTQLRQPLWNSCSCPHCPRHKSKGLDQQADEQ FT KTQNVQNV" FT CDS 280..1050 FT /codon_start=1 FT /transl_table=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:A6P7K3" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:A6P7K3" FT /protein_id="BAF93942.1" FT /translation="MAKRPADIIISTPASKVRRRLNFDSPYGTRAVVPIARVTKAKAWT FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYILGKIWMDENIKTKNHTNSVMFFLVRDRRPTGTPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGTYASREQALVRKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT CDS complement(1047..1457) FT /codon_start=1 FT /transl_table=1 FT /gene="AC3" FT /product="replication enhancer" FT /db_xref="GOA:A9EEI5" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:A9EEI5" FT /protein_id="BAF93943.1" FT /translation="MITDSRTGEYITADRAESGVYTWEIQNPLYFKILKHDSRPFLTQH FT DIIKIQIQFNHNLRKALGLHKCFLTFQIWTGLRPPIGIFLRVFKTQVLKYLDRLGVIGI FT YNVIRAVYHVLDNVLEQTIDVWTSYDIKLDIY" FT CDS complement(1177..1596) FT /codon_start=1 FT /transl_table=1 FT /gene="AC2" FT /product="transcriptional activator protein" FT /db_xref="GOA:A6P7K5" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:A6P7K5" FT /protein_id="BAF93944.1" FT /translation="MQSSSHSKNHSIPVAKTSLPQKKKKSIRRRRVDLHCGCTYYISIN FT CHDHGFTHRGVHHCGSSREWRIYLGNSKSPVFQNFETRQQTLPNTARHNQDSNTVQPQP FT AESPGTSQVFSNFPNLDGLTPSDWDFLASLQNPGP" FT CDS complement(1499..2584) FT /codon_start=1 FT /transl_table=1 FT /gene="AC1" FT /product="replication-associated protein" FT /db_xref="GOA:A9EEJ1" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:A9EEJ1" FT /protein_id="BAF93945.1" FT /translation="MAPPRRFRIDAKNYFLTYPKCSLTKAETLSQLQALETPTAKKFIK FT ICRELHEDGSPHIHVLIQFEGKFQCKNNRFFDLVSPSRSAHFHPNIQGAKSASDVKAYI FT DKDGDVLEWGVFQIDGRSARGGQQTANDAYAKAINTGNKEDALKVLKELAPKDYVLQFH FT NLISNLDRIFQPPSEVYASPFLISSFDRVPPELVDWVSSNVVCAAARPFRPISIVIEGD FT SRTGKTMWARCLGPHNYLCGHLDLSPKVYSNNAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVMIKGGIPTIFLCNKGPNSSYKEYLDEEKNAELKQWAIKNAVFITLEEPL FT YSGRENIAPTEEEEEHSQEAS" XX SQ Sequence 2739 BP; 746 A; 599 C; 614 G; 780 T; 0 other; accgaatggc cgcgcaaatt tttaggtggg ccctcaacga atgaaattga cgctacattg 60 cttatatagt gcggggggac caataaatag acttgctcac gaagtttgga tccacaaaca 120 tgtgggatcc attattgcac gaatttccag aaagcgttca tggtctacgg tgcatgctag 180 ctgtaaaata tctccaacag atcgaaaaga cctattcccc agacacagtc ggctacgatc 240 ttgtccgaga tctcattctt gtccttcgag cgaagaacta tggcgaagcg accagcagat 300 atcatcattt caacgcccgc atcgaaggta cgccgacgac tcaacttcga cagcccctat 360 ggaactcgtg cagttgtccc cattgcccgc gtcacaaaag caaaggcctg gaccaacagg 420 ccgatgaaca gaaaacccag aatgtacaga atgtatagaa gtcccgacgt gccaaggggc 480 tgtgaaggcc cttgtaaggt gcagtctttt gaatctaggc acgacgtatc gcatattggc 540 aaggtcatgt gtgtcagtga cgttacacga ggaactggac tcacacatcg cgtagggaag 600 cgattctgtg tgaaatccgt ctatattctg ggcaagatat ggatggatga aaacatcaag 660 acaaaaaatc atactaacag tgtcatgttt tttttggttc gtgaccgtcg tcctacagga 720 acaccccaag atttcgggga agtttttaac atgtttgaca atgaaccgag cacagcaacg 780 gtgaagaaca tgcatcgtga ccgttatcaa gtgttacgga agtggcatgc gactgtgacg 840 ggaggaacct acgcatctag ggagcaagca ttagttagga agtttgttag ggttaataat 900 tatgttgttt ataatcaaca agaggccggc aagtatgaga atcatactga aaacgcatta 960 atgttgtata tggcctgtac tcacgcatca aatcctgtat atgctacttt gaaaatccgg 1020 atctatttct atgattcggt aacaaattaa taaatatcga gctttatatc atatgaagtc 1080 catacatcaa tcgtttgttc caatacatta tccaatacat gataaactgc ccttattaca 1140 ttataaattc ctatgacacc caacctatcc aggtacttaa ggacctgggt tttgaagact 1200 cgcaagaaaa tcccaatcgg agggcgtaag cccgtccaga tttggaaagt tagaaaacac 1260 ttgtgaagtc ccagggcttt ccgcaggttg tggttgaact gtatttgaat cttgattatg 1320 tcgtgctgtg ttaggaaggg tctgctgtcg tgtttcaaaa ttttgaaata caggggattt 1380 tgaatttccc aggtatatac gccactctct gctcgatccg cagtgatgta ctcccctgtg 1440 cgtgaatccg tgatcatggc agttgattga tatataatac gtgcacccac aatgcagatc 1500 aactcgcctc ctgcgaatgc tcttcttctt cttctgtggg agcgatgttt tcgcgaccgg 1560 aatagagtgg ttcttcgagt gtgatgaaga ctgcattctt gattgcccac tgcttcagtt 1620 ctgcattttt ttcttcgtcc agatattcct tatagctgct atttggacct ttattgcaca 1680 ggaagatagt gggaattcct cctttaatca tgacaggctt tccgtacttc gtgttgcttt 1740 gccagtcacg ctgggccccc atgaattctt taaagtgctt tagatagtgc ggatcgacgt 1800 catcaattac gttgtaccat gcattattgc tatacacctt tgggctcaga tcgagatgtc 1860 cacacaagta attgtgtggg cctaagcacc gagcccacat tgttttgcct gttctactat 1920 ccccctcaat tactatgctt atgggcctaa aaggccgcgc agcggcacag acaacattgg 1980 acgacaccca atcgacgagt tcaggaggaa ctctgtcgaa ggatgaaatt aaaaatggag 2040 acgcataaac ctcagaagga ggttggaaaa tgcgatctaa attgctaatt aaattatgaa 2100 actgcagaac ataatctttt ggagctaatt cctttaacac tttcaatgca tcttctttat 2160 tccccgtgtt aatcgcctta gcatatgcat cgttggccgt ctgctgacca ccacgagcag 2220 atcgtccatc aatctggaaa acaccccatt ctagaacgtc tccgtctttg tcgatgtatg 2280 ctttgacatc tgacgctgat ttagctccct gaatgttcgg atggaaatgt gctgaccgac 2340 ttggggaaac caagtcgaag aatctgttat tcttgcactg gaatttccct tcgaattgga 2400 tgagaacatg gatatgcgga gacccatcct cgtgaagttc tcgacagatt ttgatgaatt 2460 tcttcgcagt cggggtttct agggcttgca attgggaaag tgtctctgct ttagttagag 2520 agcactttgg atatgttagg aaatagtttt tggcatctat tctgaaacga cgtggcggag 2580 ccataaaact tgtcgttttg attcggcgtc cctcaacttc ctctatgtaa ttggcgtctg 2640 gcgtcccata tataggtagg acgctaaatg gcagaattgt aattttggaa agaaaattac 2700 tttaattcaa aaccctcata gcggccattc gttaatatt 2739 //