ID AB360796; SV 1; linear; genomic RNA; STD; VRL; 6102 BP. XX AC AB360796; XX DT 01-MAR-2008 (Rel. 95, Created) DT 01-MAR-2008 (Rel. 95, Last updated, Version 1) XX DE Plantago asiatica mosaic virus genomic RNA, complete genome, strain: Pr. XX KW . XX OS Plantago asiatica mosaic virus OC Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; OC Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-6102 RA Namba S., Oshima K., Yamaji Y., Komatsu K., Kagiwada S.; RT ; RL Submitted (09-SEP-2007) to the INSDC. RL Contact:Shigetou Namba The University of Tokyo, Graduate School of RL Agricultural and Life Sciences, Department of Agricultural and RL Environmental Biology, Laboratory of Plant Pathology; 1-1-1 Yayoi, RL Bunkyo-ku, Tokyo 113-8657, Japan XX RN [2] RX DOI; 10.1007/s00705-007-1078-y. RX PUBMED; 17987351. RA Komatsu K., Yamaji Y., Ozeki J., Hashimoto M., Kagiwada S., Takahashi S., RA Namba S.; RT "Nucleotide sequence analysis of seven Japanese isolates of Plantago RT asiatica mosaic virus (PlAMV): a unique potexvirus with significantly high RT genomic and biological variability within the species"; RL Arch. Virol. 153(1):193-198(2008). XX DR MD5; cb6e2c27725fd003221d220e97c64687. XX FH Key Location/Qualifiers FH FT source 1..6102 FT /organism="Plantago asiatica mosaic virus" FT /strain="Pr" FT /mol_type="genomic RNA" FT /db_xref="taxon:28354" FT CDS 87..4229 FT /codon_start=1 FT /transl_table=1 FT /gene="RdRp" FT /product="RNA-dependent RNA polymerase" FT /db_xref="GOA:B1B5A3" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:B1B5A3" FT /protein_id="BAG12153.1" FT /translation="MSNVRNVFAQLTDPSLKAVIQDEAYRHLKRELAQTRHNNPFAQTP FT EAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRH FT FHRGPTHGDHFLNAHVEPKDVPRYPQDTIIKRLENIPTSIAFMGDTLHFLSPSFVTALF FT AHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYSQL FT EWLTVGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDVFL FT PAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVN FT YFEFTASLDSHTCFEDILSGNLLQRMLRPLKSGITQLLNFFRGRPSFVKLIKALDWQPI FT TLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQATITAEAALEQQAE FT TPDEHQSLSLKCPTLPEHQLWALHELGNTRCGGPLLPKGPAKLTTVEPCPDLPAENSAN FT PEPPRKTTQTLDLPHPEDPTTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRE FT LPRAEGHAHWQGPDMERIISTLRSFNRYPTPWNPDRSRAKAFTSDVKNSRTGKALHRES FT QVWKETQTMLAENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLD FT WLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFALTHASLELVILTGD FT PRQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNSKFLANKLGVYSSNPCPLKV FT TYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEV FT LYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTATTAEAKPV FT APPCTHFPVEDGTTTLDDFKEELHDKFDREIFNPTHGHTNCVQTDDPTTQLFSHQQAKD FT EALLWETINARLTISNPEANLAEFRAKKDLGDILWENYRKAMKLPNEQPDFSEDLWIRC FT AEEVQNTYLKKSVAQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIA FT SFQQHAVMLYGTMARYMRRFREALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDF FT TAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLTIMRLTGEGPTFD FT ANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQ FT ERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAY FT SLGDDLQDLLSPHQAHLHQVTVRDLVKFGGSPFLNSD" FT CDS 4231..4923 FT /codon_start=1 FT /transl_table=1 FT /gene="TGBp1" FT /product="triple gene block protein1" FT /db_xref="GOA:B1B5A4" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:B1B5A4" FT /protein_id="BAG12154.1" FT /translation="MDIVISALTSNDFQRTNTPISKPLVVHAVAGAGKTTLIQNLLPDH FT PNLSAQTAGTPQSPNLTGAYIRKLTCPEPNKLNLLDEYSALQPLKGSWDVVLADPLQHS FT GLALRPHFVKSVSHRLCPETTKLISKLICPCTSSRSDASTIQFSGLFEGPLLGTIIALD FT PTTQALLQAHGAPFLCPTAALGLEFDTVTVVSALPLEDVQDKVGLYISLSRHRAQLHVR FT SPPPHPTY" FT CDS 4889..5221 FT /codon_start=1 FT /transl_table=1 FT /gene="TGBp2" FT /product="triple gene block protein2" FT /db_xref="GOA:B1B5A5" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:B1B5A5" FT /protein_id="BAG12155.1" FT /translation="MSGAHHLTPPTDYGKPVLAASIGVSLALLVYSATRSTLPHVGDNL FT HALPHGGRYVDGTKSISYFSPNHSKSRDPLPLAFLTVLILSGLILLLSRRGRYTAHCPC FT CGKPHA" FT CDS 5025..5390 FT /codon_start=1 FT /transl_table=1 FT /gene="TGBp3" FT /product="triple gene block protein3" FT /db_xref="GOA:B1B5A6" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:B1B5A6" FT /protein_id="BAG12156.1" FT /translation="MHSRTEADTSTELSPSATSAQTTPSPGTLSHSHSSQSSSSQGSYY FT YYLAAAAILLTALAVVSLTPKPGCTIVITGHSTIIQGQCDFRPELVLAAHPRGLSLELF FT AKFKQTLHHGTQPSTDL" FT CDS 5362..5985 FT /codon_start=1 FT /transl_table=1 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:B1B5A7" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:B1B5A7" FT /protein_id="BAG12157.1" FT /translation="MALNQAPTSDALNAMTFDVSSPSVPTAAELATITQGLTTLGVPAD FT SLLSHALAVVNACFDAGSSAFVTLSGPSPTATISLAQIAGVVKVTTTLRKFCRFYAKII FT WNARLSRNLPPAGFARANIKFEHRWAGFDFFDGLLNPAALEPIGGLTRTPTPDEVTANE FT TARSLNLFEARASNSNLASTSTQFTRGQLSNTAPQVQFLPSPSD" XX SQ Sequence 6102 BP; 1560 A; 2215 C; 1238 G; 1089 T; 0 other; gaaaacaaac ctacacaaac caaacgtcaa cagacataca cggccaaaca gtggtaaccg 60 atttgctcga aagctaggtt aacggtatgt caaacgttcg gaacgtcttc gcccagctca 120 ccgacccctc tctcaaagcc gtcatccaag atgaggccta cagacacctc aaacgtgagc 180 ttgcacaaac tcgccacaac aaccccttcg cccaaacacc cgaagctgcc gacgcgctcg 240 aggcactcgg tattaactcc cacccctacg caatcacccc acacacccac gcagccgcca 300 aagcaattga gtccgacctc tacgaggtgg tatcccacta cctcccaaaa gaaaaccccg 360 tctccttcct cttcatgaag cccgccaaac tcagacactt ccaccgagga cccacccacg 420 gggaccactt cctcaacgcc cacgtggaac ccaaggacgt acccaggtac ccacaggaca 480 caatcatcaa acgcctggaa aacatcccca ccagcatagc cttcatggga gacaccctcc 540 attttctcag cccatccttc gtcaccgccc tcttcgcaca ctccccaaaa ctccaaaccc 600 tgtacgcaac gctcgtcctt ccccccgaag ccctctacag actaaggtca ctctacccac 660 aaatctacac gttgacctac tccgaggacg ggttcatgta cataccgggt ggccatgcgg 720 gagcctcgta cttccacaaa tactcgcagc tcgaatggct cacagtggga cacctcacca 780 cgccaggaca aatcaccgtg accgcccaac ggctggaaac caagggggcg aaccacctct 840 tcatctttca aaggggcaac tacctcaccc ccgaaaggcg cactttcacc accactgaac 900 actacgtcac agtcccggac gtcttcctcc cggccaagta caactgcagg acacccatct 960 caaaaacaat catgatgcag atgttcttct acattaagtc cgtcaaagag gccaaagagc 1020 gcgacatttg ggcaaaattt agacaactca tcagcaccaa agagctccaa cactaccagc 1080 cgtccgaaat caccctgctg gttaactact ttgaattcac cgcctccctc gactcccaca 1140 catgctttga agatatactt tccgggaacc ttttacagcg aatgctccga ccgctgaagt 1200 caggcattac acagctgctg aacttcttta gagggcgccc ctctttcgtc aagctgatca 1260 aggcccttga ctggcaaccc atcaccctgg aatttcccgt gcggaaggtc aacactcacc 1320 tccgaggggc cccggggttc gacagcccat tcgcacgacc acaaccagtc aacccggacg 1380 acgccgaaac cacccaaagc ttccaggcct tctgccaggc caccatcacc gctgaggccg 1440 ccctagagca acaagccgaa acacctgacg agcatcagag cctcagcctc aaatgcccca 1500 cccttccgga acaccagctc tgggccttgc atgaactggg aaacacaaga tgcgggggcc 1560 cactcctacc gaaggggcct gccaaactca caacggtgga gccctgcccg gacctccccg 1620 cagaaaactc agcaaacccc gagcctccga gaaagacaac ccaaaccttg gacctccccc 1680 accccgaaga ccccaccacc ctaccctggg tcgcctggct ccccaaactc aacgccctag 1740 gcttcgaagc cctcgagatc cagactgacc cgtccacagg agaaatgatc atgccaatca 1800 cggacacaag agagctcccc agagcagaag gccacgccca ttggcagggc ccagacatgg 1860 aacggatcat ttccaccctc cgaagcttca acaggtaccc cacaccgtgg aaccccgacc 1920 gatctagagc caaggccttc acctccgacg taaaaaattc ccgaacaggc aaggcgctgc 1980 accgcgagtc tcaagtctgg aaggagaccc aaacgatgct agcggagaac tcgcagacca 2040 acctcgccat ctccgtcatc catggtgcag ggggatcagg caaaagccag gcactacaga 2100 cactcctccg gcagtacccc aacctcccca tcgaggtcgt ccttccaacc aacgagctca 2160 ggctggactg gctaaagaaa ctcccccaca acccccctga acaattcaga acgttcgaga 2220 gagcttttgt ctgctcccgg tgccccgtgg ttatcttcga tgactacggc aagctccccc 2280 agggctatct tgaggccttc gccttgacgc acgcaagcct tgaactcgtc atcctcacag 2340 gagaccccag acagtcgacc caccatgagt ccaacgagga agctctgatc tccaaactcc 2400 cacccgcaac cgcaatattc tcggaacttt cacgctacta catcaatgcc acccaccgaa 2460 actcaaagtt tctggcgaac aaattgggtg tgtactcctc aaacccctgt ccactcaaag 2520 tcacatatgg tttccagcca caaccggggc tccaccttct ggtcccctca cttgtcaaaa 2580 aagcggcttt cactgacgcg ggccacaaag tctccacata tgccggctgt caaggcatca 2640 ctgctccgag ggtacagatt ctcctcgaca atgacacaac catgtgtacc aaggaggtgt 2700 tgtacaccgc actctcccgc gcggtcgaca gcatccactt cgtaaactcc aacgcccagt 2760 ccagtgcgtt ttgggaaaag cttgaggcca caccctacct gaaaaccttc ctaagcctag 2820 ttcgcgaaga taaaattgag gagttcacgg ccaccactgc cgaggccaaa cctgtggccc 2880 ccccgtgcac acacttcccc gtcgaggacg gcaccaccac cttggacgac ttcaaggaag 2940 agctccacga caagtttgac cgggagatct tcaacccgac acatggacac acaaattgcg 3000 tccaaactga cgaccccacc acacagctat tctctcacca acaagcaaaa gacgaggcac 3060 tcctctggga aaccataaat gcacgcctga ccatctccaa tccagaggca aacctcgcgg 3120 agtttcgggc caagaaggac ctgggcgaca tcctgtggga gaactaccgc aaagcaatga 3180 aactgccgaa cgaacaaccg gacttctccg aagacctctg gatccggtgt gcggaagagg 3240 tccagaacac atacctgaag aagtcggtag ctcaaattaa aggaggcgag cgtcgacaat 3300 ccccagactt ccacgaacac cagatcctaa tctttctcaa gtctcaatgg gtcaagaaaa 3360 tggagaagct cggcgcgaaa aagatcaaac ccggccagac catcgcctcc ttccaacagc 3420 atgcggtgat gctgtacggc actatggcgc gctacatgag gagatttcgg gaagccctga 3480 gccctaacaa catcatgata aactgcgaga aaacgcccca agacctctcc cgatgggtcc 3540 tcaactactg ggatttctcc aaaccgtcat acgccaacga cttcaccgcc ttcgaccaat 3600 cccaggacgg ggccatgctg cagttcgaaa tcctcaaggc caaatacttc aacctcccgg 3660 aatgggtcat cgaaggctac ctggacatca agctctcccc aaaaatcttc ctgggcaccc 3720 tgacaatcat gaggctaaca ggggaaggcc ccacattcga cgccaacacg gagtgtaaca 3780 ttgcctacac ccacaccagg ttcgacatcc cggaaggaac agcccaaatc tacgccggag 3840 acgactgcgc catagcccaa gtatgtccag aaaaaccttc attctccctg ctgaagaacc 3900 gtatcgccct ccaagccaag ccagcctaca ccccccagga gagaggtcag tgggccgagt 3960 tctgtggcta cctaatcaca ccaaaaggtc tcatcaaaga ccccctcaag cttcacgcat 4020 ccttggagct tgccaaggcc cagaaaaaag cgggcgtcaa agacgcaatc accaatgtgg 4080 tagccaacta cagcctcgac gccaagctag cctactctct aggcgacgac ctccaagatc 4140 tcctctctcc acatcaagca cacctccacc aggtaacggt tcgtgactta gttaagttcg 4200 gtggctcacc tttccttaac tccgattaac atggacatag tcatctcagc cctaacatct 4260 aacgactttc aaagaactaa cactcccatc tccaagcctc tagtagttca cgctgtagct 4320 ggcgcgggga aaaccacact gatccagaac ctcctccccg accaccccaa cctctccgct 4380 cagaccgccg gaaccccaca atctccaaac ctgaccgggg cttacatccg gaagctcacc 4440 tgcccagaac ctaacaaact caacctcctc gacgagtact ccgccctcca accactcaaa 4500 ggctcctggg acgtcgtgct tgccgaccca ctccaacact caggactcgc gctccgaccc 4560 cacttcgtaa agtcagtcag tcatcgcctc tgcccggaga cgaccaaact catctccaaa 4620 ctcatctgcc cctgcacctc cagccgctct gacgcctcaa ccatccagtt ctccggactg 4680 ttcgaaggac ctctcctggg caccatcatt gccctcgacc ctaccaccca agctctcctt 4740 caagcccacg gagcgccctt cctttgcccc acagccgccc tgggcctcga gtttgacacg 4800 gtcaccgtcg tctccgctct acctctagag gacgtccagg acaaggtcgg actctacatc 4860 agcctttcca gacaccgcgc ccaactacat gtccggagcc caccacctca ccccacctac 4920 tgactacggc aaacccgttc tcgctgcttc cataggagtt tctctcgccc tcttggtcta 4980 ctccgccacc aggtccacgc tcccccacgt cggcgacaac cttcatgcac tcccgcacgg 5040 aggccgatac gtcgacggaa ctaagtccat cagctacttc agcccaaacc actccaagtc 5100 ccgggaccct ctcccactcg cattcctcac agtcctcatc ctctcagggc tcatactact 5160 actatctcgc cgcggccgct atactgctca ctgcccttgc tgtggtaagc ctcacgccta 5220 aacccggctg caccattgtg atcacagggc actccaccat tatccaaggc cagtgcgact 5280 tccgcccgga gcttgtcctc gccgcccacc ctagaggctt aagtttggaa ctctttgcga 5340 aattcaaaca aacgctccac catggcactc aaccaagcac cgacctctga cgccctcaac 5400 gcgatgacct tcgacgtctc atccccgtcc gtccccaccg ccgcggaact ggccacaatc 5460 acccaggggt taacaaccct cggagtcccc gccgactcct tgcttagcca cgccctcgca 5520 gtggtcaacg cctgcttcga cgcgggctcc tccgccttcg tcaccctcag cggaccaagc 5580 cccacagcca ccatctccct cgcccaaatc gccggcgtgg tgaaagtcac caccacgttg 5640 cggaagtttt gccgcttcta tgccaaaatc atttggaacg caagactttc cagaaacctc 5700 ccaccggctg gcttcgctcg ggcaaacatc aagttcgagc accgctgggc aggcttcgac 5760 ttcttcgacg gccttctcaa ccccgccgct cttgaaccca tcggcggact cactcgaacc 5820 ccgacaccag acgaggtcac cgccaatgag acggcaaggt ccctcaacct tttcgaggct 5880 cgtgccagta actccaacct cgcctcaaca tccacccagt tcacccgcgg ccagctctcc 5940 aacacagctc cgcaggtcca atttctccct tccccctccg actagtctag aaccgtggaa 6000 agactttaaa gagtccacgc attgccaaac ttaaccagct ctcgccccgg tgtgtatttt 6060 accgttttaa taagcctacg accagtgaaa gtctggtggg cc 6102 //