ID AB304848; SV 1; linear; genomic RNA; STD; VRL; 6937 BP. XX AC AB304848; XX DT 01-MAR-2008 (Rel. 95, Created) DT 01-MAR-2008 (Rel. 95, Last updated, Version 1) XX DE Asparagus virus 3 genomic RNA, complete genome. XX KW . XX OS Asparagus virus 3 OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-6937 RA Hashimoto M., Yamaji Y., Oshima K., Namba S.; RT ; RL Submitted (24-MAY-2007) to the INSDC. RL Contact:Shigetou Namba The University of Tokyo, Graduate School of RL Agricultural and Life Sciences, Department of Agricultural and RL Environmental Biology, Laboratory of Plant Pathology; 1-1-1 Yayoi, RL Bunkyo-ku, Tokyo 113-8657, Japan XX RN [2] RX DOI; 10.1007/s00705-007-1052-8. RX PUBMED; 17955163. RA Hashimoto M., Ozeki J., Komatsu K., Senshu H., Kagiwada S., Mori T., RA Yamaji Y., Namba S.; RT "Complete nucleotide sequence of asparagus virus 3"; RL Arch. Virol. 153(1):219-221(2008). XX DR MD5; a88551b3bc5b9f06c4fd18eef659478b. XX FH Key Location/Qualifiers FH FT source 1..6937 FT /organism="Asparagus virus 3" FT /strain="J" FT /mol_type="genomic RNA" FT /db_xref="taxon:445435" FT CDS 82..4926 FT /codon_start=1 FT /transl_table=1 FT /gene="RdRp" FT /product="RNA dependent RNA polymerase" FT /db_xref="GOA:B1B3N8" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR005123" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR037151" FT /db_xref="UniProtKB/TrEMBL:B1B3N8" FT /protein_id="BAG12158.1" FT /translation="MAKVRASLERIRDPSVQTAISEAAYAHVRPVLKEALVNCPYALTD FT AEADCLENFGITVNPYATQTHTHAACKAIENRLLEIVGKHLPKERCTMLFLKRSKLRYL FT RRAAALKDDFINQDVEPKDLFRYDRDTIRTRLKDINTPIAYMSDTLHFMSHSELIHIFA FT DSPKLQTMLATVVLPIEAVHRRSALYPALYSINYGPKGFEYIPGNHGGGAYFHPYDTLD FT WLKVRQLQGKDYYGIDTDLTLTFQLVESLGANHLFIIQRGDLRTPLMRTFCRNALVTMP FT KIFCPESMNANRPLTKTKAMQMLMYCKSVKQVSERDIYAKFRQIISTQELELYEPDEIV FT HLCNYFNFVAHLDSITCYEDLLGNSLWRRLTIPIRTTITKALDFFRGQQSFSKLLGALK FT WESFSYSLEPIDFTVRYHSASARLLSSKTGLAVPAAAAIIKDSRSDPTLFSEEDLEEAP FT FEDFLGRLSFPPNAPRNDPTSTDDSDGSPDTPDDPPVEPSPAGPAPANEASTSSTSSGP FT PVHHSDWQSATILHMLTNLPFLQLKGRRAYFFATHPVIDYGHDRVLYSTLAWPSTLTDI FT VSSLHILTNACLVQVYEEGASIPWHRDNERCYEFDPITTLNFGKATFEFEGGVALKLDE FT GDWFSMAGPLLHLRHRVTAHSPMRISLTFRLHKHNMLGVPLPDGLTLPFTPAPEEPTTP FT HSNDGTSSGANDTTATKPDPPPTSFRSPIHPDPAADLTKQPVTPLPWASWVPLLQNHGF FT DGQQMQHDPAGNLIIPVQDIHRLAHCAYPDEVPECLRHTLNTIKRHPVEITIDHQRASS FT YASDIKNCRTGKLLAQMDMKWKASFAYKMQHESKTVTGTVIHGCGGSGKSHAIQTWMRT FT LPADQTIVTVITPTVLLRNDWSTKLPILPSDVFKTFEKAIVQPCNPVVIFDDYTKLPPG FT SIEATVMHHSNISYIVLTGDSRQSVYHELNAEAYIATLPEAVDVFTPFCEFYLNATHRN FT VQSLANKLGVYSERQGRLKINFASHHLKASRTPLLVPSTMKRNAMADMGHHSMTYAGCQ FT GLTAPKIQILLDSHTQFCSDRVLYTCLSRAVDSIHFINTGPTTGDYWAKLESTPYLKAF FT IDTYRDEKTELYNSEPASDQPREPEAPTTHFPLAPKPLLEPLVSTLPTKEEREIFSRST FT GYSDTIQTEDPEVQLFQHQQARDETLYWATIDARLSLATPEENLQEFNMKKDVGDILFM FT NYAKVMNLPAEPVEFEERLWEVSAAEVRNVYLSKPVGNLINAAARQSPDFPKHKIALFL FT KSQWVKKVEKLGALKVKPGQTIASFMQETVMLYGTMARYLRKMRQRFQPPNIFINCERT FT PEDLDTFVKTQWNFARPAHTNDFTAFDQSQDGAMLQFEVMKAKFFNVPSEIIEGYIYIK FT LNAAIFLGTLGIMRLSGEGPTFDANTECSIAYNATRFHIDSGTAQVYAGDDMALDRICP FT EKSSFHRLERQLKLTSKPMFPKQVKGDYAEFCGWVITPAGIIKHSLKMYASIQLQKKLN FT NIKESARSYALDLRYAYKLGDSLQDHLTEEEAAYHQQSVRDMHLLHQSETLAHGPSSPP FT HHFATTEPIRTKTQKRNATKRKQKVRLADIAPPAY" FT CDS 4959..5702 FT /codon_start=1 FT /transl_table=1 FT /gene="TGBp1" FT /product="Triple gene block protein 1" FT /db_xref="GOA:B1B3N9" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:B1B3N9" FT /protein_id="BAG12159.1" FT /translation="MEISYIVDLLNFLGFTRSSRPFSLPLVVHGVAGSGKTHLLRKVSL FT HFPELVHCSFTPQLIDPNSGRRQLPASETPTDLLDEYLGGPNPVVRLLKVCDPLQYNCP FT DPEIPHFQSLTTRRFCPLTTTLLNSLFGTNIVSAVPTCCRIEIQDPYSTDPIGTVVTFS FT PEIHTLLSRHGCQPTPISELWGLNIRVVSCYVDSLEEALLNHRAPLFLALTRHTAELHI FT FLFDARTDAAYELRKCLQDPRHRGS" FT CDS 5635..5994 FT /codon_start=1 FT /transl_table=1 FT /gene="TGBp2" FT /product="Triple gene block protein 2" FT /db_xref="GOA:B1B3P0" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:B1B3P0" FT /protein_id="BAG12160.1" FT /translation="MPGLTPPTNYESVFKILAIGALSCLSIYSLRTNHLPHTGDNIHHL FT PHGGNYADGTKRVQYFRPSAPVHGSSKFTAACAILFLTLLILAQSQWPARAVRCSVRVC FT GHCHPDSTMPSNSDR" FT CDS 5837..6094 FT /codon_start=1 FT /transl_table=1 FT /gene="TGBp3" FT /product="Triple gene block protein 3" FT /db_xref="GOA:B1B3P1" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:B1B3P1" FT /protein_id="BAG12161.1" FT /translation="MAVQNSPPPAPFFSSLCSSLLSLNGLLVLSVVLCAYAATVTPTPP FT CQVIVTGEAVRIIGCAEPSHILANLNLAPWNGVKFPILQV" FT CDS 6144..6836 FT /codon_start=1 FT /transl_table=1 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:B1B3P2" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:B1B3P2" FT /protein_id="BAG12162.1" FT /translation="MANTTKDSTSTKAPEPVPVDLSDPTRAPSLKDLQAIKYVSTTTAV FT ATPDEIKLLGDLFKKLGVDGASVGPAMWDLARAYADVQSSRSATLSGTTPSNPAITRQA FT LARQFYVINITPRQFCMYFAKVVWNMMIDSNVPPAGWVKHGLPEDCKFAGFDFFEGVLS FT PSSLDPADGLIRQPSQREVQAHSTAKYGALARQRIQNGNFVSNLAEVTRGRAGGVNSMY FT AIEAPPEL" XX SQ Sequence 6937 BP; 1666 A; 2395 C; 1423 G; 1451 T; 2 other; gaaaacaaaa cgacatcgaa acactcgcag cttatctgsc catataaggg agaataaccg 60 caaaccgcac tatactccca tatggccaaa gttcgagcgt cgttagagag gatccgggac 120 ccatcagtgc aaactgctat ctcagaagca gcttacgctc atgtacgccc cgtcctcaaa 180 gaagcattag ttaattgccc ctacgccctc accgatgccg aagcggactg tttagaaaac 240 ttcggtatca ctgtaaatcc atacgccacc caaacacata cccacgccgc atgtaaagct 300 atagaaaata gattattaga aatagtaggt aaacacctcc ctaaggaacg ctgcaccatg 360 ctcttcctca aacgcagcaa acttaggtac ctccgacgtg ccgccgctct caaagacgac 420 ttcatcaacc aggacgtcga gcctaaagac ctcttccggt atgatcggga caccattcgc 480 accagactca aggacatcaa caccccgatc gcctacatgt ctgacacgct ccattttatg 540 tctcactcgg agcttatcca tatcttcgcc gattccccga agctccaaac catgttggcc 600 acggttgtcc taccaatcga ggccgtgcac cgacgctccg ccctatatcc agccctctac 660 agcatcaact acggacccaa agggttcgag tacattcctg gaaatcacgg cggcggagcc 720 tacttccacc cgtatgacac cttggactgg ttaaaggtgc gccagctcca aggtaaggac 780 tactacggca tcgacaccga cctcactctc accttccaac tcgtcgaaag cctcggggcc 840 aaccacctct tcatcatcca acgtggtgac ctccgcaccc cccttatgcg gaccttctgc 900 cgcaatgccc ttgtcaccat gcccaaaatc ttctgccccg agtctatgaa cgccaaccgc 960 ccactcacca aaacgaaggc aatgcagatg ctcatgtatt gcaagtccgt caaacaagtg 1020 tcagagagag acatatatgc aaaattccga cagatcatct ccacgcaaga gttggagctg 1080 tatgagcctg acgaaatagt gcatttgtgc aactacttca acttcgtcgc tcacctcgac 1140 tccatcacct gctacgaaga cctgttaggc aactctctgt ggcgccggct caccatcccc 1200 attcgcacca cgatcaccaa ggccctagac ttcttccgcg gccagcaaag cttcagtaaa 1260 ctgctgggtg cgcttaaatg ggaatccttc tcctactctc tcgagccgat cgatttcaca 1320 gtgcgctacc acagcgcctc agctcgactc ctctccagca agaccggtct cgctgtccca 1380 gccgctgccg ccatcatcaa agacagccgg tccgacccca ctctgttctc cgaagaggac 1440 ctcgaagaag cccccttcga ggatttccta ggccgactct ccttcccccc caacgccccc 1500 cgcaacgacc ccacttccac cgacgactcc gacggctctc ccgatacacc cgacgaccca 1560 ccagttgagc cgtctcccgc cggacccgcc cccgctaacg aagcctccac gtccagcacc 1620 tcatcaggcc cgcctgtcca ccacagcgac tggcagtcag caaccattct ccatatgctg 1680 accaacctac ctttcctcca attgaaaggc agacgggcat acttcttcgc cacccacccc 1740 gtcatagatt acggccacga ccgtgtgctt tactccactc tcgcttggcc ctccacgctt 1800 accgacatcg tcagctctct tcacatcctc accaacgcat gtttggtgca agtttatgaa 1860 gaaggagctt ccatcccatg gcaccgggac aacgaaaggt gctatgagtt tgacccaatc 1920 actacgctaa acttcggcaa ggccaccttt gaattcgaag gtggcgttgc cctgaaacta 1980 gacgaaggtg attggttctc catggccggg ccactactcc acctgcgcca ccgagtcacc 2040 gcacattctc ccatgcgcat atccctcacg tttcggttgc ataagcacaa catgctgggc 2100 gtgcccctcc ccgacggcct gactctccct ttcacgcccg caccagaaga acctacgaca 2160 cctcactcta acgacggaac cagctccggg gcgaatgaca caaccgccac gaaacccgac 2220 ccccccccca ccagctttcg gtcaccaatc caccccgacc cagcggctga cctcaccaag 2280 cagcccgtca ccccgcttcc ttgggccagc tgggttcccc tgctccaaaa ccatggcttc 2340 gacggccaac aaatgcaaca cgacccggca gggaatttga tcattcccgt gcaggacatc 2400 catcggctgg cccactgcgc ttaccctgac gaagtycctg agtgtctgcg ccacaccctc 2460 aacaccatca agaggcaccc tgttgagatc accatcgacc accaacgcgc cagctcctac 2520 gcatccgaca tcaagaattg ccgcactggc aagctgctgg ctcagatgga catgaagtgg 2580 aaggcctcct tcgcttacaa gatgcagcac gaaagcaaaa ctgtgactgg cacagtcatc 2640 cacgggtgcg ggggttcagg caagtcacac gctatccaaa cttggatgcg cactctcccc 2700 gctgatcaaa ccattgtcac tgtcatcaca cccactgttc tgctccgcaa cgactggagc 2760 accaagctgc ccatcctccc cagcgacgtc ttcaaaactt ttgagaaggc gatcgttcaa 2820 ccatgtaacc cggtggtcat cttcgacgac tataccaaac tcccacccgg ttccattgaa 2880 gcaaccgtca tgcatcacag caacatctcc tacattgtcc taactggaga tagcagacag 2940 tcggtgtacc acgagctcaa tgccgaggct tacatcgcca ccttaccaga ggctgtggac 3000 gtcttcaccc ccttctgcga gttctacctc aacgctacac acagaaatgt gcagtccctc 3060 gccaacaaac tgggagtcta ctcagagaga caaggtcggc tcaaaataaa cttcgcttct 3120 caccacctca aggcttctag gacaccactg ctggtgccct ccacaatgaa gcggaatgct 3180 atggcggaca tgggtcacca tagcatgacc tacgcagggt gtcaagggct caccgcaccg 3240 aagatccaga tcttgcttga cagtcacacc cagttctgtt ccgaccgtgt gttgtacacc 3300 tgcctctccc gcgccgtcga ttcaatacac ttcatcaaca ctggcccgac taccggcgac 3360 tactgggcaa aactcgagag cactccctac ctcaaagctt tcattgacac ctaccgggac 3420 gagaagaccg agctctacaa cagtgagccc gcttctgacc agcccagaga gccggaagct 3480 cccaccactc attttcccct cgcccccaaa ccactactcg agccgctcgt gtcgacactg 3540 cccaccaaag aggaaaggga aattttctct cgctccaccg gctactccga caccatccaa 3600 accgaagatc cggaagtgca gctcttccag caccaacaag cccgagacga aaccctatac 3660 tgggccacta ttgacgctcg cctctctctc gccacccccg aagagaatct ccaagaattc 3720 aacatgaaaa aagacgtggg agacatcctc ttcatgaact acgccaaagt catgaacctc 3780 cccgccgagc cggtggagtt cgaagagaga ttgtgggagg tttctgctgc tgaagtcaga 3840 aacgtctacc tcagcaagcc tgtgggtaac ctcatcaacg cagccgcccg ccaatcaccc 3900 gacttcccaa aacacaaaat cgcccttttc ctgaagtctc agtgggtgaa gaaggtcgag 3960 aaattgggtg ctctcaaagt gaagcccgga cagactatcg cctccttcat gcaggaaact 4020 gtgatgctct acgggacgat ggcccgttac ttacgcaaaa tgaggcaaag attccagccg 4080 cccaacatct tcatcaactg cgagcgaact cctgaggact tggacacctt tgtcaaaact 4140 caatggaatt tcgcccgccc agcccacacc aacgacttca ccgccttcga ccaatctcag 4200 gatggcgcca tgctgcaatt tgaggtcatg aaagctaaat tcttcaacgt gccctccgag 4260 atcatcgagg gatacattta catcaagctt aacgcggcca tcttcctcgg gactctgggc 4320 atcatgcgcc tgtctggcga gggtccaact ttcgacgcaa ataccgaatg ctccatcgcc 4380 tacaacgcca cccgcttcca cattgacagc ggtaccgccc aggtttacgc tggagatgac 4440 atggcccttg accgcatctg ccccgagaag agcagcttcc accgtttgga acgacaactc 4500 aagctcacat ccaaacccat gttcccaaag caagtcaaag gggattacgc tgaattctgc 4560 ggctgggtca tcacccctgc cggcatcatt aagcattccc tgaagatgta cgcctccatc 4620 caactccaga agaagctgaa caacatcaaa gagagtgccc gttcttacgc tctcgacctc 4680 cgttacgctt acaagctggg tgattcactc caagatcacc tcacagaaga ggaggccgcc 4740 taccaccaac aatccgtgcg ggacatgcat ctcctccacc aatcagagac tctcgcccac 4800 ggaccctcca gcccgccaca ccacttcgcc acaacagaac ccatccgcac caaaacacag 4860 aagagaaacg ccaccaagcg taaacaaaaa gtgcggttgg ccgacattgc accacccgct 4920 tactagcggg gttaagtagc cttttctttt tctttgaaat ggaaattagt tatatagtag 4980 atcttttgaa cttcttaggc tttacccgtt ccagccgtcc cttctccttg cccctcgttg 5040 tgcacggtgt cgccggttct ggcaaaactc acctcttgcg gaaagtctcc ctccatttcc 5100 ccgagttggt tcactgcagt ttcacccccc aactcatcga tccaaattcc ggtaggcgcc 5160 aactcccagc ttccgaaaca cccaccgacc tgctcgacga atacctcggc gggccgaacc 5220 cagtcgtgcg cctgctgaaa gtttgcgatc cgctccaata caactgccca gatccggaga 5280 tcccacactt ccaatccctc accaccagac ggttctgccc cctcacgacc accctgctca 5340 actcactgtt cggcaccaac atcgtatcag ccgtccccac ctgctgccgc atcgagatcc 5400 aagacccgta ttccactgat cccatcggca ccgtggtcac tttctctccc gagatccaca 5460 ctcttctatc cagacacggt tgccaaccaa ctccgatttc cgaactctgg ggccttaaca 5520 tccgtgtggt gtcttgctac gtcgattctc ttgaagaggc ccttctgaac caccgcgctc 5580 cattattctt ggcactcacc cgacacaccg ccgaacttca catcttcctc ttcgatgccc 5640 ggactgacgc cgcctacgaa ctacgaaagt gtcttcaaga tcctcgccat cggggctctt 5700 agttgccttt ctatctactc cctccgcact aaccaccttc ctcacaccgg cgacaacata 5760 catcaccttc cgcacggtgg caactacgct gacggcacaa aacgcgtgca atactttcgc 5820 cccagcgccc ctgtccatgg cagttcaaaa ttcaccgccg cctgcgccat tcttttcctc 5880 actctgctca tccttgctca gtctcaatgg cctgctcgtg ctgtccgttg ttctgtgcgc 5940 gtatgcggcc actgtcaccc cgactccacc atgccaagta atagtgaccg gtgaggctgt 6000 acgcatcatc ggctgcgctg aacctagcca catcctcgcc aatctcaatc tagcaccctg 6060 gaacggggtt aagtttccta ttttacaggt ttgaaattat ttgttttctt tctttaggat 6120 cccctacccc acaataaagc ttcatggcga acaccactaa agactcgact tccaccaagg 6180 cgcctgaacc cgtcccagtc gacctctccg accctacccg ggcgccctcg ttgaaagacc 6240 tgcaggccat caagtacgtt tccaccacca ccgctgtggc caccccggac gagatcaaac 6300 tgcttggcga cctcttcaag aaactcggtg tcgacggtgc ctctgtgggc cccgccatgt 6360 gggatcttgc ccgcgcctac gccgatgtcc aatccagtcg ctccgccaca ctctccggca 6420 ccacaccgtc caatccagcc atcactcgcc aagccctggc gcgccaattc tacgtcatca 6480 acatcacacc gcgccaattc tgcatgtact tcgcgaaggt cgtctggaac atgatgatcg 6540 actctaatgt gccaccagct ggttgggtta aacatgggct cccagaagat tgcaagttcg 6600 ctggcttcga tttcttcgaa ggcgtacttt caccctcctc gctcgacccc gccgacggct 6660 tgatccgtca accctcccag cgtgaagtcc aggctcattc taccgccaaa tatggagctc 6720 tcgcccgcca gcgtatccag aacggtaact tcgtgtccaa cttggccgag gtcacccgcg 6780 gacgtgctgg cggcgtgaat tccatgtacg ccatcgaagc tccccccgaa ctataattgc 6840 attagccaac ttaaattaat gcgtgggttt ctatagttta tttcccacag cagactatca 6900 tatttactct ctttgagcgt taataagtac gtgtgtt 6937 //