ID AB299272; SV 1; linear; genomic RNA; STD; VRL; 3563 BP. XX AC AB299272; XX DT 02-JUL-2008 (Rel. 96, Created) DT 02-JAN-2014 (Rel. 119, Last updated, Version 2) XX DE Chinese wheat mosaic virus genomic RNA, complete genome, segment: RNA2. XX KW . XX OS Chinese wheat mosaic virus OC Viruses; Riboviria; Virgaviridae; Furovirus. XX RN [1] RP 1-3563 RA Shirako Y.; RT ; RL Submitted (26-MAR-2007) to the INSDC. RL Contact:Yukio Shirako University of Tokyo, Asian Natural Environmental RL Science Center; 1-1-1, Bunkyo-ku, Tokyo 113-8657, Japan XX RN [2] RA Shirako Y., Maejima H.; RT "A Chinese wheat mosaic virus isolate in Japan"; RL Unpublished. XX DR MD5; f5730edb895258906d690bf36081902f. DR RFAM; RF01080; UPD-PKib. DR RFAM; RF01104; SBWMV2_UPD-PKb. XX FH Key Location/Qualifiers FH FT source 1..3563 FT /organism="Chinese wheat mosaic virus" FT /segment="RNA2" FT /strain="Japanese Northern (= JN)" FT /mol_type="genomic RNA" FT /country="Japan:Northern part of the main island" FT /isolation_source="wheat (cv. Koyuki komugi)" FT /collection_date="Jun-2006" FT /db_xref="taxon:83544" FT CDS 207..2603 FT /codon_start=1 FT /transl_table=1 FT /transl_except=(pos:852..854,aa:OTHER) FT /gene="N-CP-RT" FT /product="N-CP-readthrough protein" FT /note="Amino acid redidue at 852..854 (TGA) is unknown" FT /db_xref="GOA:B3IUH7" FT /db_xref="InterPro:IPR001337" FT /db_xref="UniProtKB/TrEMBL:B3IUH7" FT /protein_id="BAG50444.1" FT /translation="MDRFSRLKDEVSTALSKSTGKVTVEDTGEGRTPVTVVLPMAVKSG FT YTGFNRELNVMANTHAYIRLSALLSQVETWQSTRTSVLSHLGIMLNGVSKLGERNFFSR FT SKRFGTHTLDGDEIFCDLGGEGVSQVLTRLTVALGAAKGEGAQSRNAKRGAPPAAGQIE FT TEEQGQTDQSLAISNALGELMTYVSSKEYTMNECYTQDSFEAKYNLKWEGSSXRDGVSD FT KSRVQVVEDLSNRLTLADDLGILPRRDNMGMIIKDEPEVVYSELEDRLLSFEHSVYHPC FT AITVEREITTTSDLLVVPDTEDVEFVENDNVIVTEVMVDDESNYYWLYAVLLIISFLIT FT GFIALSRSFIHFLGDGRQGPGGQTRYRMASALWAVRLWLLRHATLRFCGLGVVRKTHTR FT SSMRRYLRDYNYQLDMWEAAISCSPSEALIVADQHIFVSGVMRLLDYEGDLTCVSDIRK FT VMTDYGMKNFSFEKWLDKQTVSCSLVVLNDKVKNDDVHLDENMLSLENASIEEVLACVI FT ETQRGSLYFNDIIALQFAFKLIGTPEFSDFVLAYKGPLYPCYVEAIKRHGDELANLRVD FT EDRNRQSEKAIEWLLLAGQGAFVVQSGVTVGVLIFRIHKWLKKRLLLRALQSLPSVGGS FT SGGGGGALPMSVLNQFGQALTFDERLAALQHHLDLREDNLDFCSSTDLKQEVANVLATR FT ADDTFHVADVPYVAGVVRSVGSVSTNLGGPVVGGVSARVSDGASSSLVLSNARSTKSRR FT RSVSKKDRVFPGGYSVYSDMLPSKIGGKSGVSSLKMKIASKPLAI" FT CDS 207..854 FT /codon_start=1 FT /transl_table=1 FT /gene="N-CP" FT /product="N-terminal extension coat protein" FT /db_xref="GOA:B3IUH8" FT /db_xref="InterPro:IPR001337" FT /db_xref="UniProtKB/TrEMBL:B3IUH8" FT /protein_id="BAG50445.1" FT /translation="MDRFSRLKDEVSTALSKSTGKVTVEDTGEGRTPVTVVLPMAVKSG FT YTGFNRELNVMANTHAYIRLSALLSQVETWQSTRTSVLSHLGIMLNGVSKLGERNFFSR FT SKRFGTHTLDGDEIFCDLGGEGVSQVLTRLTVALGAAKGEGAQSRNAKRGAPPAAGQIE FT TEEQGQTDQSLAISNALGELMTYVSSKEYTMNECYTQDSFEAKYNLKWEGSS" FT CDS 324..854 FT /codon_start=1 FT /transl_table=1 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:B3IUH9" FT /db_xref="InterPro:IPR001337" FT /db_xref="UniProtKB/TrEMBL:B3IUH9" FT /protein_id="BAG50446.1" FT /translation="MAVKSGYTGFNRELNVMANTHAYIRLSALLSQVETWQSTRTSVLS FT HLGIMLNGVSKLGERNFFSRSKRFGTHTLDGDEIFCDLGGEGVSQVLTRLTVALGAAKG FT EGAQSRNAKRGAPPAAGQIETEEQGQTDQSLAISNALGELMTYVSSKEYTMNECYTQDS FT FEAKYNLKWEGSS" FT CDS 2652..3173 FT /codon_start=1 FT /transl_table=1 FT /gene="p19" FT /product="p19" FT /db_xref="InterPro:IPR007609" FT /db_xref="InterPro:IPR016567" FT /db_xref="UniProtKB/TrEMBL:B3IUI0" FT /protein_id="BAG50447.1" FT /translation="MTTRIHSCEKCANGFSNVICVSKYRTSVYKSLGLDPVKCRLPADC FT GVNCGMPAAFVLVKGHPELSMDGFCGEKHRGYVVSGAWRSAQLRTLNAELDKLVAREES FT LRSQIRGLNEAIKTSTAPVYAPIKLQKLKVEAFNVDEKIQARSTDLCDAMTSVMAKLST FT DSSPKKTRAE" XX SQ Sequence 3563 BP; 903 A; 661 C; 944 G; 1055 T; 0 other; gtatttcaat ctgtacaagt gcggtgttaa ccaaactaat tcagatatac ctttcttatc 60 ccgaaaagaa ataaaatatt ttcgggaatc gtggtaactg atactttgga actgtattct 120 aagccaggtt taggcccgtt atgcgataaa tcctaggttg gtggagaata ctgtttcgtt 180 gttgaggtga ctgctgttac gcggcgctgg ataggttcag taggctgaag gacgaggttt 240 ctaccgcgtt atctaagtct acagggaaag taaccgttga ggacactggt gagggtagga 300 cgccggttac ggtggtatta cccatggccg tgaaatctgg ttatactggt ttcaacaggg 360 agttgaatgt tatggccaat actcatgcat atatacgtct cagtgctctt ttgagccaag 420 ttgagacatg gcagagtacg aggacgagtg tgttgtctca ccttggtatt atgttgaacg 480 gggtaagtaa gttgggggaa cgcaatttct tctcacggag taaacgcttc ggtactcata 540 cccttgacgg ggatgagatc ttttgcgacc ttggcggaga gggggtcagt caggtactga 600 ctagactcac tgtcgctctc ggtgctgcta aaggtgaagg ggcgcagtcc aggaatgcaa 660 agaggggagc accgccggct gctggccaga tagaaacaga agaacaaggg cagactgatc 720 aatcgttggc tatatctaat gctttgggcg aactgatgac ttatgttagt tcgaaagaat 780 acaccatgaa tgagtgttac acacaggatt ctttcgaggc taagtataat cttaagtggg 840 aaggttcgag ttgacgggat ggcgtctcgg acaagagtag ggtccaagtg gtggaggatc 900 tgtctaacag actcacactg gctgacgacc tgggtatctt accgagacgc gacaacatgg 960 ggatgatcat caaagatgaa cctgaagttg tgtactcaga actagaagac agattactga 1020 gttttgagca ttcagtttat catccctgtg cgataacagt tgagagagag ataactacta 1080 ctagtgatct actggttgta cctgacactg aagatgtgga gttcgttgag aacgataatg 1140 ttatcgtcac ggaagtcatg gtggatgatg aatccaatta ctattggctt tacgcggtcc 1200 tgctcatcat ctcctttctt attactggtt ttatagctct gtcacgttct tttattcact 1260 ttcttggtga tggcagacag ggaccaggtg gacaaacacg gtatagaatg gccagtgcgt 1320 tgtgggccgt aagactgtgg ttacttcgtc acgctacatt acgtttctgt ggattgggtg 1380 tcgttcgcaa aacgcatacc aggagttcca tgcgtaggta cttgcgtgac tacaattatc 1440 agcttgacat gtgggaagct gctatcagct gttcccccag cgaggcactg atagtggcag 1500 atcaacatat attcgtatct ggtgtcatgc gtttgcttga ttacgagggt gatctaacat 1560 gtgtcagtga catcagaaaa gtgatgaccg actacggaat gaaaaatttt tcttttgaaa 1620 aatggttaga caagcagacc gttagttgtt ctctagtcgt cctgaatgat aaagtaaaaa 1680 atgatgatgt gcatctcgat gaaaatatgt tatctttgga gaatgcatcc atcgaggagg 1740 ttcttgcatg cgttattgaa acacaaaggg gtagtctcta ctttaatgac atcatcgctt 1800 tgcagttcgc ttttaaactc attggtacac ctgaattttc agactttgta cttgcttaca 1860 aaggccctct gtatccttgt tacgttgaag ctataaagag acatggtgac gagttggcta 1920 atttgcgagt tgatgaagac agaaacagac agagtgaaaa agctatcgag tggttgctgt 1980 tagcaggtca aggtgctttt gttgtacaat caggtgtgac ggtgggagtt ctcatctttc 2040 ggattcataa atggttgaag aagaggttgt tgttgcgtgc tttacagtct ctaccgtctg 2100 tgggtgggag ttctggtgga ggtggtggtg cactgcctat gtcagtgctc aatcagtttg 2160 gtcaggctct cacgttcgat gagcgtttgg cggcgttgca acaccatctt gatcttagag 2220 aggataactt ggatttttgc tcttctactg accttaaaca agaagttgct aacgttcttg 2280 ctactagggc tgacgatacg tttcatgttg ctgacgtgcc gtacgttgcc ggtgttgtta 2340 ggtctgttgg gtctgtgtcc accaatcttg gtggacctgt tgttggaggt gtaagtgcca 2400 gggtctctga cggtgccagt tcttctctag tgttgagtaa tgcgcgtagt actaagtcta 2460 ggcgtcgttc agtgtccaag aaagataggg tctttcctgg tggttacagt gtgtatagtg 2520 atatgttacc tagtaaaata ggtgggaaaa gtggtgtgag tagtttgaaa atgaaaattg 2580 ctagtaagcc tttggcgatc tagcatgttg tttttgcatt cacactcaat cttaccatta 2640 acgtaatcgt tatgactact cgtattcatt cttgtgagaa gtgtgctaac ggtttttcta 2700 acgtcatctg cgttagtaag tatcgtacta gcgtgtataa atctctgggt ttggatcctg 2760 ttaaatgtcg tctgcctgca gattgtggtg ttaattgtgg tatgcctgca gcttttgttc 2820 tggtgaaagg acatccagag ttgtccatgg atggtttctg cggtgaaaaa cataggggtt 2880 atgtggtttc aggggcatgg cgtagtgctc aacttcgaac cttaaatgct gagttggata 2940 agttggttgc cagggaagaa tcgttgcgtt cgcagattcg cggtctgaat gaggccatta 3000 agacctcaac cgcacccgtt tacgctccaa ttaaacttca aaagctgaaa gttgaagctt 3060 tcaatgtcga tgaaaaaata caggctcgta gcactgatct ctgtgatgcg atgacttctg 3120 ttatggctaa gctgtcaact gattcctcac cgaagaaaac tcgtgcggag taattgtgta 3180 tgtccttact gacatctgcg tttgtatctg tgtgtgcgtg ctggattcgg taaccaggat 3240 aaataacccg gccgaaaacc gttccaaaaa atatggaata aagaggggca attctgtcac 3300 tttggttaaa gagtttcaca ctctttaaaa atgacgcggt ctttgcgata aaagatggtg 3360 cttgctattt cacctaaatc gaaatagcga ctgggcgtcc cgcagtacgt ttaaactgtg 3420 gactatcctc tagtctctac tgatgtaatt gaaaaaagat cagtattaga ttgtgatggg 3480 gagcgactgg gtgtcgcggt tgctaagaca cagcaactaa gaggggttca attccccccc 3540 aaaccggtgg gtaaaccggc cca 3563 //