Dbfetch
ID AB299271; SV 1; linear; genomic RNA; STD; VRL; 7147 BP. XX AC AB299271; XX DT 02-JUL-2008 (Rel. 96, Created) DT 02-JAN-2014 (Rel. 119, Last updated, Version 2) XX DE Chinese wheat mosaic virus genomic RNA, complete genome, segment: RNA1. XX KW . XX OS Chinese wheat mosaic virus OC Viruses; Riboviria; Virgaviridae; Furovirus. XX RN [1] RP 1-7147 RA Shirako Y.; RT ; RL Submitted (26-MAR-2007) to the INSDC. RL Contact:Yukio Shirako University of Tokyo, Asian Natural Environmental RL Science Center; 1-1-1, Bunkyo-ku, Tokyo 113-8657, Japan XX RN [2] RA Shirako Y., Maejima H.; RT "A Chinese wheat mosaic virus isolate in Japan"; RL Unpublished. XX DR MD5; 5e2aacf000888ffc0d22548344790110. DR RFAM; RF01106; SBWMV1_UPD-PKb. XX FH Key Location/Qualifiers FH FT source 1..7147 FT /organism="Chinese wheat mosaic virus" FT /segment="RNA1" FT /strain="Japanese Northern (= JN)" FT /mol_type="genomic RNA" FT /country="Japan:Northern part of the main island" FT /isolation_source="wheat (cv. Koyuki komugi)" FT /collection_date="Jun-2006" FT /db_xref="taxon:83544" FT CDS 102..5678 FT /codon_start=1 FT /transl_table=1 FT /transl_except=(pos:4152..4154,aa:OTHER) FT /gene="p212" FT /product="p212" FT /note="Amino acid redidue at 4152..4154 (TGA) is unknown" FT /db_xref="GOA:B3IUH4" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013664" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:B3IUH4" FT /protein_id="BAG50441.1" FT /translation="MPIDSSSILGIISEEDVIRAAISTSATKFGSQLHSTVCDHVKETY FT LDAMERQKTKKKIDVRRDLSQEQLQLLNDLYPERHIVSSNCERGTHSFAAASRKIETDL FT LLSRIPKKSWVYDIGGNWATHIKRNDGRRVHCCCPTIDIRDSARKTVRWASIEKYLDEK FT DEIPTEVGERIKRVQADEIKIYENLKNKRAQPEDLDGKWYCGNKFEECVFRAERAYAMA FT IHSIYDIDLMDLANALEEKRIKIMSGTFLFSVDLLLGKKSGSLPTMDGFFEVEGDYVKY FT GFKNDTNPGYKHKLSQLMKYLTKTFVVAKGGTIYYLELTEQRGDVMFFTMTDATEARMN FT GVVADESFKCIPIDNKSEVVFPIFEVDKQTDSLIFSEVLLSKDFVQRAIEYTGRLKPNQ FT LTPDNVNTYLTSTNNTIIIGGSSRKNTTKVDATLIQQITTTLVVWTELMNLRQKRVLEK FT LRLQMKDDVDFKSLAHTAFLKVFGKVSYYQRALRCFANWLSYVHGTDAIQFHDVPLYAE FT ITDRVKLWKTHAPNQGFVLDMEDLDVKIKMHEVSEREKRDVSRCIVSGKLGELQIHSEP FT SNNEEQTNGDYRDTRRRTTFEDLLEGEVATNFLDDWCEKNDHFNFSRDDALSKYAWGLK FT LLKGIWEFLLPPMDFAPVYVDDEQARLRMVHVNERRNTSDTGADGDVAACEVAADFSKA FT MDTLVDVVKKMDQKKLELVDKVKTSAVAVVELSKTKPVTGNSCAVDLWADFEKDLDDDD FT ESGCGVSMVTKGKEVCQDNVGPVLLCGSSSRSSVSEVEKETDVVSVTDFGSTPAASCGG FT MVLDESVSVTSNDASVELPVTATTVATVETGNADAVIASSDESAFSDVNDKSWGSVAEE FT ESDDTFYSCSGVISDKVKKSNLPKRPDFSKFPTVQQKAKHEAMWYLQCKIVSDRTTLRS FT IIDDHLRGMFHNGTCELPKDSAFLDYTADNSGTWMYGKPSRFGHSYGVGFSLDTRQRVS FT KCELVKLMWNHDSRGQVNQKPVNTRAFQYLLLSELSFMMNEMIIYRNLQQVMRKRERTK FT QARITLRDGVPGCGKSTWILNNANPTKDMILSVGKEATEDLKEKFMKKHRCVESDLKRI FT RTVDSFLMHDYDKYRAATVHFDEALMAHAGMVYFCADILGAKKVICQGDSQQIPFINRV FT ESITLQYSKLVIDETEHVRLTYRSPVDVAHYLTKKSWYSGGRVTTKNPVMRSMKTVGPR FT DVKPMTSVHCVPYFKDAQYLTFTQSEKTDLYKALRNKGPVTVNTVHETQGKTFDDVIVV FT RLKTTENEIYPGGRKGQPYEIVATTRHRRSLVYYTAIEDRLFEDISDMQDVMESKLMKS FT LCPEFDKXRFGSKYESILICDREVRVPDVGTPAIMQDFYDKVLPGNSTMDSHFDGYEVS FT TSDISIELENCTVQPNKNVRVWQDKRGLVPVMRTAMPPNRQNLPVEAMLALKKRNMAAP FT KLQEAVNEFEVIERTINRAKEIFFNVELIDDSELSTRESNLRWWRRQSTTARAQMKKEM FT RVLHEIDLCFYSYCIKGGEKPKMDRSPQHEYGALQTVVFPDKIVNALFGPVTKEINERI FT RMALKPHVVYNSRMNADELNRTVEFLDPDEDYNAFEIDFSKFDKSKTSLHIRAVIELYK FT LFGLNDLIALLWEKSQCQTKVKDFVNGITAYLLYQQKSGNCDTYGSNTWSAALALLESM FT PLEKAKFMIFGGDDSLILFPKQQVVEDPCRRLASLWNFDCKLFDFEHNMFCGKFLLKIG FT DRFKFAPDPMKLITKLGRKDIADGRLLSEIFVSIGDNFRSYRDYRILEQLCLAVRERYK FT TDEDPTATLITLKKYIFDFKLWASLFNYSGEFVESRVDRNFEW" FT CDS 102..4154 FT /codon_start=1 FT /transl_table=1 FT /gene="p153" FT /product="p153" FT /db_xref="GOA:B3IUH5" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR013664" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:B3IUH5" FT /protein_id="BAG50442.1" FT /translation="MPIDSSSILGIISEEDVIRAAISTSATKFGSQLHSTVCDHVKETY FT LDAMERQKTKKKIDVRRDLSQEQLQLLNDLYPERHIVSSNCERGTHSFAAASRKIETDL FT LLSRIPKKSWVYDIGGNWATHIKRNDGRRVHCCCPTIDIRDSARKTVRWASIEKYLDEK FT DEIPTEVGERIKRVQADEIKIYENLKNKRAQPEDLDGKWYCGNKFEECVFRAERAYAMA FT IHSIYDIDLMDLANALEEKRIKIMSGTFLFSVDLLLGKKSGSLPTMDGFFEVEGDYVKY FT GFKNDTNPGYKHKLSQLMKYLTKTFVVAKGGTIYYLELTEQRGDVMFFTMTDATEARMN FT GVVADESFKCIPIDNKSEVVFPIFEVDKQTDSLIFSEVLLSKDFVQRAIEYTGRLKPNQ FT LTPDNVNTYLTSTNNTIIIGGSSRKNTTKVDATLIQQITTTLVVWTELMNLRQKRVLEK FT LRLQMKDDVDFKSLAHTAFLKVFGKVSYYQRALRCFANWLSYVHGTDAIQFHDVPLYAE FT ITDRVKLWKTHAPNQGFVLDMEDLDVKIKMHEVSEREKRDVSRCIVSGKLGELQIHSEP FT SNNEEQTNGDYRDTRRRTTFEDLLEGEVATNFLDDWCEKNDHFNFSRDDALSKYAWGLK FT LLKGIWEFLLPPMDFAPVYVDDEQARLRMVHVNERRNTSDTGADGDVAACEVAADFSKA FT MDTLVDVVKKMDQKKLELVDKVKTSAVAVVELSKTKPVTGNSCAVDLWADFEKDLDDDD FT ESGCGVSMVTKGKEVCQDNVGPVLLCGSSSRSSVSEVEKETDVVSVTDFGSTPAASCGG FT MVLDESVSVTSNDASVELPVTATTVATVETGNADAVIASSDESAFSDVNDKSWGSVAEE FT ESDDTFYSCSGVISDKVKKSNLPKRPDFSKFPTVQQKAKHEAMWYLQCKIVSDRTTLRS FT IIDDHLRGMFHNGTCELPKDSAFLDYTADNSGTWMYGKPSRFGHSYGVGFSLDTRQRVS FT KCELVKLMWNHDSRGQVNQKPVNTRAFQYLLLSELSFMMNEMIIYRNLQQVMRKRERTK FT QARITLRDGVPGCGKSTWILNNANPTKDMILSVGKEATEDLKEKFMKKHRCVESDLKRI FT RTVDSFLMHDYDKYRAATVHFDEALMAHAGMVYFCADILGAKKVICQGDSQQIPFINRV FT ESITLQYSKLVIDETEHVRLTYRSPVDVAHYLTKKSWYSGGRVTTKNPVMRSMKTVGPR FT DVKPMTSVHCVPYFKDAQYLTFTQSEKTDLYKALRNKGPVTVNTVHETQGKTFDDVIVV FT RLKTTENEIYPGGRKGQPYEIVATTRHRRSLVYYTAIEDRLFEDISDMQDVMESKLMKS FT LCPEFDK" FT CDS 5740..6729 FT /codon_start=1 FT /transl_table=1 FT /gene="p37" FT /product="p37" FT /db_xref="InterPro:IPR000603" FT /db_xref="UniProtKB/TrEMBL:B3IUH6" FT /protein_id="BAG50443.1" FT /translation="MTSKDVKGESYESVYNNMLDMQTEAGGANELRLNRQRSFNVENRY FT VEKALIQPGIITKMADAWTSFTKTNKEEGTPYNLSFSCVLINVIPTVPKGYAGTVEVSL FT LDSGLSPLENIIPDQTQMMELGAGPHVMCFFMHYSIPLNDKDRSIKLAFKIDAEMANKG FT MSVMNVYTYWTQRQGDHSSYSEPQRSTCSKLLLGYDKSLKMKTRGDVRRFVGRSLTLHN FT LEQSVPQMLPANINVLKENVPLYRKESIMDLTKDEREKNAKLEELRKTRAIQTGRNVEE FT MKKRQMELLKEARRKTAEDSVAAADKRKYQIGSSSEQPDITFGSFNKV" XX SQ Sequence 7147 BP; 2110 A; 1234 C; 1841 G; 1962 T; 0 other; gtatttcttt ctctctacgt cgttagacag tgtagagtgt ttggaatact tgttgcaata 60 caaaggcacg cttcggcgat aaatcctttg tttgtaacaa aatgccgatc gatagcagtt 120 cgatacttgg tattattagt gaagaggatg tcattagggc cgccatcagt actagtgcca 180 caaaatttgg ttcgcagttg catagtactg tgtgcgatca tgttaaagag acgtacttgg 240 atgctatgga aagacaaaaa acaaaaaaga aaatagatgt gaggcgtgac ttgtcacagg 300 aacagctcca acttttaaat gacctttatc cggagagaca cattgtgtca agcaattgtg 360 aaagaggtac gcacagcttt gcagcggctt cgaggaagat cgagactgat ctgttattga 420 gtcgtatccc taaaaaatcg tgggtctacg atattggggg caactgggcc acgcacatca 480 agcgcaacga tgggcgtagg gtacattgtt gttgccctac tattgacata agagattctg 540 cgaggaagac tgttaggtgg gcgtctatag aaaaatattt ggatgagaag gacgagatac 600 ccactgaagt cggtgaacgt attaagcgtg tgcaagctga tgaaattaag atttatgaga 660 atttgaagaa taaaagagct cagcctgagg atttagatgg taagtggtac tgtggaaaca 720 agtttgagga gtgtgtgttc agagcagaga gagcatatgc gatggccatc catagcattt 780 atgatattga tcttatggat ctggccaatg ctttagaaga aaaaagaata aagatcatga 840 gtggtacatt cctgttttcg gttgacctgt tacttggaaa gaagagcgga tcactgccaa 900 ccatggatgg tttctttgag gtggaaggtg actacgtgaa atatggtttc aaaaatgata 960 caaacccagg ttataagcat aagctcagtc agctgatgaa gtatctgacg aagacttttg 1020 tcgtcgcaaa aggaggaact atttactacc tagagcttac tgaacagcga ggtgatgtga 1080 tgttcttcac aatgacggat gcgacggaag cgaggatgaa cggtgttgta gctgacgagt 1140 cattcaagtg cataccaatt gataataagt ctgaggttgt atttcccata ttcgaggtgg 1200 ataaacagac tgattcgttg attttttccg aggtattatt gtcaaaagat ttcgttcaaa 1260 gggctatcga atacacagga aggcttaaac cgaatcaact cactccggat aatgtgaata 1320 cctatttgac ttccaccaac aatactatca ttattggtgg ttcatcaaga aagaatacta 1380 cgaaagtcga tgctacgttg attcagcaaa ttactaccac tctggtggtt tggacggagc 1440 ttatgaattt gcgccaaaag agggtgttgg agaagttaag gttgcagatg aaagacgatg 1500 tggatttcaa gtcgttggcg catactgcgt ttttgaaggt attcggtaaa gtgagctact 1560 atcagagagc gttacgttgt ttcgctaatt ggctttcgta cgtgcatggc actgatgcca 1620 ttcaatttca cgatgtccct ctgtatgcag agatcacaga cagagtgaag ttgtggaaga 1680 cgcacgcacc gaatcagggc tttgtgcttg acatggaaga cttggatgtg aagatcaaaa 1740 tgcatgaggt gtccgaaaga gaaaagagag atgttagtcg gtgcatagtg tctgggaagt 1800 taggggagtt acagatccat tctgaacctt ctaataatga agaacaaacc aacggtgatt 1860 atcgtgacac tcggagacgt acaacttttg aagacctgtt ggagggtgaa gtggctacga 1920 attttcttga tgattggtgt gagaagaatg atcatttcaa tttttcgcgt gatgacgcct 1980 tgtctaagta tgcttggggt ttgaaattac tgaaaggtat ttgggagttt ttactcccgc 2040 ctatggattt cgcgcccgtt tatgtcgatg atgagcaagc aagactaagg atggtccatg 2100 tgaatgaaag gagaaatact tctgataccg gtgctgacgg agacgtcgca gcttgtgaag 2160 ttgcagcaga tttttcgaaa gcgatggaca cgttggttga cgtggtaaag aagatggatc 2220 agaaaaagct ggaactagtt gacaaggtga aaacatcggc ggttgctgtt gtcgaactga 2280 gtaagactaa acctgttact ggtaacagct gcgcggtgga tctctgggct gattttgaga 2340 aggacttgga cgacgatgat gaatctggtt gtggcgtttc catggtgact aaaggtaaag 2400 aagtatgcca agataatgtc ggaccggtgc ttttgtgtgg tagttcttca cgctcctctg 2460 ttagtgaagt ggagaaagaa actgatgtgg ttagtgtgac tgattttggg agtactcctg 2520 ccgcaagttg cggaggaatg gttcttgatg aatcggtaag cgttacgagt aacgatgctt 2580 cggtcgaact acctgtcact gctacaactg tcgcgacagt tgagacgggg aatgcggacg 2640 ccgtgatcgc tagtagcgac gagtcagctt ttagtgacgt taacgacaag tcgtggggct 2700 cggtcgctga ggaagaaagt gatgacactt tttattcatg ctctggtgtg atttcagaca 2760 aagtgaagaa aagtaatttg ccgaagaggc cagatttttc gaaatttcct actgtgcaac 2820 agaaggcgaa acacgaggcg atgtggtatc tacaatgcaa gatcgtttct gataggacca 2880 ctctgaggag tattattgat gaccatctgc gggggatgtt tcacaatgga acttgtgaac 2940 tgcctaaaga ttcagctttt ttggactata ctgccgataa cagcgggacc tggatgtacg 3000 ggaaaccgtc acgttttggt cacagttatg gagttggttt ttcactggac acgaggcaga 3060 gagtaagtaa gtgtgaactt gtgaagttga tgtggaatca tgacagccgt ggtcaggtaa 3120 atcagaaacc agtgaatacg agagctttcc agtatttact gcttagtgaa ctctccttta 3180 tgatgaacga gatgataata taccgtaacc ttcagcaggt gatgcgcaag agggagagga 3240 ctaaacaggc acgtattaca ttgagagatg gagttcctgg ttgcggaaaa tctacgtgga 3300 ttctgaacaa tgcaaatccc acaaaagata tgattctatc ggtgggaaaa gaggcaactg 3360 aggatttaaa agagaaattt atgaaaaaac acaggtgtgt ggaatccgac ttgaagagga 3420 taagaactgt ggattctttt cttatgcacg attatgacaa gtacagggca gcaaccgtac 3480 actttgacga ggcacttatg gcgcacgctg gtatggtgta cttttgtgct gatatactcg 3540 gtgctaagaa ggtcatttgt caaggtgatt cccaacaaat accttttatt aatcgcgttg 3600 aatctatcac attgcagtac tcaaagcttg taattgacga gactgagcat gtgcgactaa 3660 cgtacagatc tcctgttgac gtggctcatt atcttaccaa aaaatcgtgg tacagtggag 3720 gaagagttac tacaaagaac cctgtgatga gatctatgaa aactgtggga ccgagagacg 3780 tcaaacctat gacgtcagtt cactgtgttc cttattttaa agacgcgcag tacttgacgt 3840 ttacgcaatc tgaaaaaact gatttgtaca aggcgctgag gaataaaggc ccagtcacag 3900 tgaataccgt gcatgagact cagggaaaaa cttttgatga cgtcattgtg gtgaggttaa 3960 aaactacaga aaatgagatt tacccaggtg gtaggaaagg tcaaccttac gaaattgtgg 4020 caacaaccag acatcgacgg tcattggttt attatactgc gattgaagac aggcttttcg 4080 aagatattag tgacatgcag gatgtcatgg agagcaaact catgaagagt ttgtgtcccg 4140 aattcgacaa atgacggttt gggtcgaaat atgagtccat cttaatatgc gatagagagg 4200 taagggtacc tgatgtagga acacctgcaa ttatgcagga cttctacgac aaggtgttac 4260 ctggaaattc aacgatggat tcacatttcg acgggtatga agtttctaca tctgacataa 4320 gcatcgaatt ggagaactgc acagtacaac ccaacaaaaa tgttagggtg tggcaagaca 4380 agaggggttt ggtaccggtg atgcggactg ctatgccgcc taatcgacag aatcttccgg 4440 ttgaggccat gttagcgttg aaaaaacgga atatggcagc accgaaattg caagaagctg 4500 tcaatgaatt tgaggtgata gagaggacta taaatcgtgc caaagagatc ttctttaatg 4560 tggaactgat cgacgacagt gaactttcta ctagagaatc caacttgcgt tggtggagaa 4620 gacaatctac aaccgcgagg gcgcagatga aaaaggaaat gcgggtattg catgagatag 4680 acctgtgttt ttacagttat tgcatcaaag gtggtgaaaa acctaagatg gacagatcac 4740 cccagcacga atacggagcg ttacagacgg tggtgtttcc cgataaaatt gtgaacgctc 4800 tcttcggtcc ggtcacgaag gaaatcaatg agcgtatcag aatggctttg aaaccgcatg 4860 ttgtgtacaa ttcgagaatg aatgccgatg aactcaaccg tacagttgag ttcttagatc 4920 cagacgaaga ttacaatgcg tttgaaatcg atttttcaaa attcgacaaa tcaaaaacgt 4980 cgttgcacat tcgagcggtt atcgagctat acaagctttt cggtctgaat gatttgatcg 5040 cccttctgtg ggagaaatcg caatgtcaga ctaaggtaaa ggactttgta aatggtatta 5100 ccgcgtattt gctttatcag cagaaatcgg gtaattgcga cacatatggt tcaaacacat 5160 ggtccgcggc gttagcattg ttggaatcaa tgccattgga aaaagcaaag tttatgatct 5220 tcggaggtga cgactcattg atcctttttc caaaacaaca ggttgtggaa gatccctgca 5280 ggaggcttgc ctcactgtgg aactttgact gcaagctgtt tgattttgag cacaacatgt 5340 tctgtgggaa attcttgctt aagattggag acaggttcaa atttgcacct gatcctatga 5400 agttgattac gaaactgggt cgtaaggata ttgctgatgg gagattgttg tctgagattt 5460 ttgtgtctat cggagataat ttccggtctt accgggatta caggatactc gaacaacttt 5520 gtttggccgt acgagaaagg tacaagactg atgaagatcc gacggctacg ttgattactt 5580 tgaagaagta catcttcgat tttaagcttt gggctagttt gtttaattat agtggtgagt 5640 ttgtggagag tagagtagat aggaactttg aatggtaatt cgctgtttct cgttgttttt 5700 atcttttgtt cgcttctctt ttcctcttta ctgctaatca tgacttctaa agatgtcaaa 5760 ggtgaatcgt acgagtcggt gtacaacaat atgttggata tgcaaactga agcgggcggt 5820 gcaaatgagt tgcgtctgaa caggcagagg agtttcaatg ttgagaatcg gtatgtcgaa 5880 aaagcactca ttcaaccggg gattattaca aagatggccg atgcatggac gagctttaca 5940 aaaacgaaca aagaggaagg gaccccatat aacttgtctt tcagctgcgt gttaataaac 6000 gttataccaa cagtacctaa aggttacgca ggtactgtgg aagtatcatt gcttgattcg 6060 ggcctgtcac cgcttgagaa tatcattccg gatcagacgc aaatgatgga gttgggcgcg 6120 ggaccacatg tgatgtgttt ctttatgcat tacagcatac ctttaaatga caaggatcgt 6180 tcaatcaagt tagctttcaa aattgatgca gagatggcta acaaaggtat gagtgtgatg 6240 aacgtctaca cttattggac gcaaagacag ggggatcatt cttcgtattc tgaacctcag 6300 aggtcaactt gttcgaagtt gcttttgggt tatgataaga gtttgaagat gaagacgaga 6360 ggagatgtcc gacgtttcgt tggtcgttca cttactttgc acaatttaga gcaatctgtg 6420 ccacagatgc ttcctgctaa tattaatgtg cttaaagaga atgtcccttt gtatcggaaa 6480 gagagtataa tggatctcac taaagatgaa agggagaaaa atgctaagtt ggaggaactt 6540 agaaaaactc gtgccattca aacaggacgc aatgtcgaag agatgaagaa gaggcagatg 6600 gagctgttga aagaggctcg tcgtaagacg gctgaggatt cggtcgctgc tgctgacaag 6660 cgtaagtatc aaattggttc atccagtgag caaccggaca tcacttttgg ttcttttaat 6720 aaggtgtgat aggtgtgtat actatgcata tatacattat tgtatatggc ttgtaagttt 6780 actattatat ttgtactttg tattattaca ttgtaaaaat agtctaactt gtcggacaga 6840 gacaagtcgt ttccagtacg ataactggaa ccgcttgata agcgggttag aaaacaatca 6900 aacctatttg agcaggttgc gctcaaacgt ggtcattacg ataaatgact ctgttaacca 6960 aacagaagta aattggttac gtagtacagt gcgttaaact gtacgactat cttctagtcc 7020 ctattgatgt aattgaaaaa agatcaatat tgggcaatga cgaagagcga ctgggcgtcg 7080 cggctgctaa gacacagcag ttaagagggg ttcaattccc ccccgaaccg gagggttatc 7140 cggccca 7147 //