ID AB295644; SV 1; linear; genomic RNA; STD; VRL; 4020 BP. XX AC AB295644; XX DT 18-AUG-2007 (Rel. 92, Created) DT 18-AUG-2007 (Rel. 92, Last updated, Version 1) XX DE Radish mosaic virus genomic RNA, segment RNA2, complete sequence. XX KW . XX OS Radish mosaic virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Comovirus. XX RN [1] RP 1-4020 RA Namba S., Yamaji Y., Oshima K., Komatsu K.; RT ; RL Submitted (02-MAR-2007) to the INSDC. RL Shigetou Namba, The University of Tokyo, Graduate School of Frontier RL Sciences; Yayoi 1-1-1, Bunkyo-ku 113-8657, Japan RL (E-mail:anamba@mail.ecc.u-tokyo.ac.jp, RL URL:http://papilio.ab.a.u-tokyo.ac.jp/planpath/, RL Tel:81-3-5841-5053(ex.25054), Fax:81-3-5841-5090) XX RN [2] RX DOI; 10.1007/s00705-007-0993-2. RX PUBMED; 17533551. RA Komatsu K., Hashimoto M., Maejima K., Ozeki J., Kagiwada S., Takahashi S., RA Yamaji Y., Namba S.; RT "Genome sequence of a Japanese isolate of Radish mosaic virus: the first RT complete nucleotide sequence of a crucifer-infecting comovirus"; RL Arch. Virol. 152(8):1501-1506(2007). XX DR MD5; ca243366ac002dd558ae8dbbd59d70e8. XX FH Key Location/Qualifiers FH FT source 1..4020 FT /organism="Radish mosaic virus" FT /segment="RNA2" FT /strain="Japanese" FT /mol_type="genomic RNA" FT /db_xref="taxon:328061" FT CDS 417..3704 FT /codon_start=1 FT /transl_table=1 FT /product="RNA2-polyprotein" FT /db_xref="GOA:A7M6L2" FT /db_xref="InterPro:IPR003181" FT /db_xref="InterPro:IPR003182" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:A7M6L2" FT /protein_id="BAF75831.1" FT /translation="MTYFSPQNHFVNYILARHGCDEDSGDFRVSPQQKYNELLVQSPLK FT FVFFIFFFHFVVFIERLFGFRFAADSWLSYRFQGLWRSLRKPIEFAKARKAALAEFSPQ FT PFVFLDPIITYSADSFIDMEQVMERGVAAKALMVQDKVSINKKHKYEGIKDCIPSGKDM FT YVFRQKMFDMLMRRRRSKEVDITRIEGSEIIETKHMDVGTLTPGENVVLNVKLVDDDRA FT LSSRASDYTLHHSVRESKYATAMHVGAIEVIFDSFASPSSDIVGGMVLVDTAHKTVENA FT VRSVFVTGLAGGKMIRVLMYPNTLVEIGPKMNERFKLVCTTSNSDIADGFNLAAVKVNV FT VGCTQSLTARYVPQPFLEQCLNEERGTVVEYLGQMSYVMHNSNEISEEFLAQQTMAFDL FT GSNLRLQGSSSGASLQRSTSMKYLVGPRQSFKQLELDKEPSAFERKRLEAKDGADKFRD FT STFVDPVYGKTRRAFGQTSMTRSLLNRFSSANETEGTPLDTKIARTKILLTKVMAGGKI FT LYTARLSDVLLNKDQRAAISFQRTHVQHRKLVALATLGVPENTGCALMMCYNSGVRGKA FT VVDAYTASAEASVIWNPACQRQAVLEIDVNPCQSGWSYQYLRQTNSYFNVVCISGWTTT FT PLTDLSMTIDWYLSSEESVTSIYYASGGNSVIKLNRWMGRLIFPQGTETTMQRMPLAIG FT GGAGGNGLVYMNMPNALCSLWRYIRGGVKFEIIKLSSPYVKATIAFFIAFTDVDATSPN FT LEAYPHKLVQFAEIQDRVTIEFDKDEFVMAWSSQVHTNVPLDQDGCPYLYAVVHDCAGS FT TIPGDFNIGVVLKEMVDVEAIGRHPGWKGARPLPASPQGLRKSASGVWNELYTIRGPPE FT AKSTEVVQFAIDLVGVGISTAGRGTWSLETSNSPMNNLLRTATWKSGTVHFQVLMEGNP FT LVKRGDWASYCEISLVQSAKDTTLSSRNWVMKDPSSWELEFDVKIEGPNAGFENWEAHL FT SNQTSWYLTFAVYNPDQTTVFTVNGMLNDDFCCAGNTLMPPFLEPQSITSDRTPLSQMI FT FNYEDNLVRDTDPPDPDNVRERAETSSDHERRLQQQKKRGFNNKFAF" XX SQ Sequence 4020 BP; 1130 A; 746 C; 973 G; 1171 T; 0 other; tattaaaatt ttattgaaat tttgataaac cgcaatcagg accagtgtcc gaacagttac 60 ttttgaactc aattttcaac gaagacaggt aattggctta caaaccgatc agactgtcat 120 tgagaacaaa ataatcaggt tacgaacagg ctcgcgagag cattttgtgc gaagtaaggg 180 acacttgtat agtctcattg gtgcttttgc atctttgagc gatacggtta ccttgttgtt 240 tgcattccta accagacgaa ggtgggtaac gagcttataa acttgtcaga ccaccacagg 300 aaacgatagt gcgatttcac attgctgtgc ctcttagaga atatcagata ttgtgaacgc 360 gtacgctggg gttagaagtc acgcccgtct aaaatcaatt aaatcattgg acgtgaatga 420 cttacttttc tcctcaaaat cattttgtga attacatatt agctaggcac ggttgcgacg 480 aggattcagg ggacttccga gtctctcctc aacaaaaata caacgaattg ttagtacaat 540 ctcctttaaa gtttgttttc tttattttct ttttccattt tgtagttttt atagaacgct 600 tgtttggatt ccgatttgct gcagacagtt ggttgtcata ccgctttcaa ggtttgtgga 660 gaagtttaag aaagcccatc gagtttgcca aagctcgaaa ggctgctcta gcagaatttt 720 caccgcaacc attcgttttc ttagacccca ttattacata ttcagcagat agttttatag 780 atatggaaca agttatggaa cgtggagtgg cagcgaaagc cctgatggtg caagacaagg 840 tgtcaattaa caagaaacat aagtatgagg gcatcaagga ttgcattccg tcaggaaagg 900 atatgtacgt ttttcgccag aaaatgtttg acatgttgat gcgccgaaga aggagcaagg 960 aagtcgacat cactcgcatt gaagggagtg aaataataga aacgaaacac atggacgttg 1020 ggactttgac tcctggcgag aatgttgtgt tgaatgtcaa gcttgtggac gacgatagag 1080 ctctaagcag tagggctagc gattacactc ttcaccactc tgtgcgtgaa tcaaagtatg 1140 ccacagccat gcacgttgga gctattgaag ttattttcga tagttttgcg tccccttcta 1200 gtgatatagt tgggggaatg gttttggtag atacagccca caaaacagtc gaaaatgctg 1260 tgcggagtgt gtttgtgaca ggattggcag gtgggaagat gatacgtgta ctcatgtacc 1320 caaatacgct agttgaaatc ggacccaaaa tgaatgagag attcaagttg gtgtgcacta 1380 cttctaatag tgatattgca gatggtttta acctggctgc agtcaaagtc aatgtagtgg 1440 gatgtactca gagtttgact gcacgatatg tgccacaacc gtttctggaa caatgtctca 1500 atgaggagcg tggcaccgtt gttgagtact taggacaaat gtcctatgtg atgcacaatt 1560 ccaacgagat atctgaagaa tttctagcgc aacagacaat ggcatttgat cttggaagca 1620 acttgcgttt gcaagggtct tcatctggag catccttgca gcgctctact tcaatgaaat 1680 atttggttgg accaagacag agctttaaac agctggagct ggacaaagag ccatcggcat 1740 ttgaaaggaa aagacttgag gcaaaggacg gtgcggacaa gtttcgagat tcaacgtttg 1800 tggatcctgt atatgggaaa acgagaagag cttttggaca gacttctatg acgcgctctc 1860 tgctcaatag attttcctct gccaatgaaa cggagggaac tccgcttgat accaagatag 1920 caagaaccaa gattttgctc acaaaggtaa tggcaggggg aaaaattttg tacacagcgc 1980 gcttgagtga cgttctccta aacaaggatc aaagagctgc tatttccttt caaagaactc 2040 acgttcaaca taggaaattg gtggctttag ctacgttagg agtgccagaa aacactggat 2100 gtgctctaat gatgtgctac aacagtggag tacgaggaaa agcagtcgtt gatgcctata 2160 cagcgtcagc agaagctagt gtgatttgga atccagcctg tcagcggcaa gcggtgcttg 2220 aaatagatgt gaatccatgt caaagcggat ggagctacca gtacctcaga cagaccaata 2280 gctacttcaa cgtagtgtgc atctcgggtt ggacgacaac tcccttgacg gacttgtcca 2340 tgaccataga ctggtatctg agttctgaag agagtgtaac ttccatatat tatgcttcag 2400 gtggcaattc tgtgataaag ctgaataggt ggatgggacg tttaattttc ccacagggaa 2460 cggaaacaac catgcaacgt atgcccttag ctataggagg tggtgcagga ggaaatggac 2520 tggtgtacat gaatatgcca aatgctttgt gttctctgtg gagatatatc agaggaggag 2580 tcaagtttga gataatcaag ctaagctctc cctatgtaaa ggcaaccata gctttcttta 2640 tagcttttac tgatgttgat gccacttcgc ctaatcttga agcatatcct cacaagcttg 2700 ttcaatttgc agaaattcag gacagagtga caatcgagtt tgataaagat gagtttgtca 2760 tggcctggtc ctcgcaggtt cataccaatg tgcctctgga tcaggatggc tgtccatatt 2820 tatatgcagt ggttcacgat tgtgcaggat caaccattcc tggtgatttt aacataggag 2880 ttgttttaaa agaaatggtt gatgtagaag ccataggcag acatccagga tggaaagggg 2940 ctcggccttt gcctgcgtca ccccaaggac tgcgtaagag cgcgtcgggt gtgtggaatg 3000 agttgtacac aattagaggt cctcccgagg ccaagtccac cgaggtcgtt cagtttgcca 3060 ttgatctcgt gggcgttgga atttctaccg caggacgtgg aacatggtcg ttggaaacta 3120 gtaacagtcc catgaacaac ttgctgcgta cagccacgtg gaagagtgga acagtccatt 3180 ttcaagttct tatggaggga aatcctttgg ttaaaagggg agattgggct tcttactgtg 3240 aaatttcatt agtccagagt gctaaagata caacattgtc gagccgtaac tgggtcatga 3300 aagatccctc atcatgggag ctggagttcg atgttaaaat tgaaggacct aatgctggct 3360 ttgaaaattg ggaggctcat ctgagcaatc aaacaagttg gtatctaacg tttgcagttt 3420 acaaccctga tcaaaccact gtgttcactg taaatgggat gttgaatgat gatttttgct 3480 gtgctggcaa tacactgatg cctccttttc tagaaccaca aagtataact tcagatagga 3540 cacccctgtc gcagatgatc ttcaattatg aggacaattt ggtaagggac acagatccac 3600 cagatccaga caatgtacgg gaaagggcgg aaactagcag tgatcatgag cgtagattgc 3660 aacagcaaaa gaagcgtggt ttcaacaata aatttgcatt ttagagtggt tttcttttga 3720 acattttcct agctttcctt gttttctagt atttgtggtt tgtttgtttt cttttctttt 3780 cttatttaga ggctttaaat tttaatgttc ttcttttctt ttcttatttg tactttaagt 3840 gaatttgaat gttggtttga atattagatt aaatcttctt tggatgtttg aaagtctgtg 3900 gaaacattcc ggttcaggga gtaggaccgc ctaggaggta ggactctggg tttaattgct 3960 ctcacatgtt ataaatagaa tacattcgct tactttggtt attgagtgtg ttttcttttt 4020 //