ID AB295643; SV 1; linear; genomic RNA; STD; VRL; 6064 BP. XX AC AB295643; XX DT 18-AUG-2007 (Rel. 92, Created) DT 18-AUG-2007 (Rel. 92, Last updated, Version 1) XX DE Radish mosaic virus genomic RNA, segment RNA1, complete sequence. XX KW . XX OS Radish mosaic virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Comovirus. XX RN [1] RP 1-6064 RA Namba S., Yamaji Y., Oshima K., Komatsu K.; RT ; RL Submitted (02-MAR-2007) to the INSDC. RL Shigetou Namba, The University of Tokyo, Graduate School of Frontier RL Sciences; Yayoi 1-1-1, Bunkyo-ku 113-8657, Japan RL (E-mail:anamba@mail.ecc.u-tokyo.ac.jp, RL URL:http://papilio.ab.a.u-tokyo.ac.jp/planpath/, RL Tel:81-3-5841-5053(ex.25054), Fax:81-3-5841-5090) XX RN [2] RX DOI; 10.1007/s00705-007-0993-2. RX PUBMED; 17533551. RA Komatsu K., Hashimoto M., Maejima K., Ozeki J., Kagiwada S., Takahashi S., RA Yamaji Y., Namba S.; RT "Genome sequence of a Japanese isolate of Radish mosaic virus: the first RT complete nucleotide sequence of a crucifer-infecting comovirus"; RL Arch. Virol. 152(8):1501-1506(2007). XX DR MD5; a447d43025eeb74d1d308fbc99aa8c99. DR EuropePMC; PMC2861173; 20229114. XX FH Key Location/Qualifiers FH FT source 1..6064 FT /organism="Radish mosaic virus" FT /segment="RNA1" FT /strain="Japanese" FT /mol_type="genomic RNA" FT /db_xref="taxon:328061" FT CDS 340..5901 FT /codon_start=1 FT /transl_table=1 FT /product="polyprotein" FT /db_xref="GOA:A7M6L1" FT /db_xref="InterPro:IPR000199" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="UniProtKB/TrEMBL:A7M6L1" FT /protein_id="BAF75830.1" FT /translation="MACVTLDRDQQSYALIPYVTDKHVTWLLKCYVRVNTFDPDFPVTK FT RLERLRQHHFDLLCLGYGAFVMHRNAMAHVPRTVETADFIFEDYHQFLCDLVTGNAGIT FT RLRKYINVCYGTYLDMVLEFSACTLDDEGDEDFELQGLKSCLHSLANYIPSTLDRAISW FT STNKVIDGIRARFEEVVAEWCPMAMQACSWISNIWDKVTVWVQESIEAMRWFLKGAREL FT FYYGVSILTASCVIGIVEKILVATNLLAPNRGLVEAFLSSAALTGAFMSFKKKEDPTPM FT ITMISVLAGVVSAAVTAMFGAPCVAVLQGPVELLESAATALGIFCETTLLSMGKTCQAV FT NQISTCAGNLKAMAGKLFGILQDFIWKVFGMESRFLRDASLMFEEDVDQWLKDIAECQD FT SYLAKAYSSQDDIMKMQALVKKGHDMRSKVLKVTSRISPVLANTVTRGVESVEKLLRES FT LCQGVKATRRIPFVVYAYGESRTGKTLVVDKLITDFQNHFGLGKDTVYSRNPIDQYWSG FT YRRQPIVSIDDFGAVTCDPSMEAQMIPLVSSAPLPLTMAAIEEKGMMFDSKFIFCSSNL FT LEASPESKLQDNQAFRNRRHVLINVKLDATKPYNMHDFTENQIYQILKYDNGTYVVQAE FT FHTYGDLFSYCLERWEKHENEQTANLANSLEEPKADGDFINFEFLMHTLIRRNLPDKMV FT DVIFEERTKTQFVPLVTYRRKGKLWSYYVSPEGRIQTIAESLEDPKALAKEVESMDFLR FT RMYEMLRYNEETDLIVKMHLKDLAREDFYDDKMNYIGTFGNEREHALMRSTFDSMAGWH FT KVVLCGMGVLQDRCSSVKWYDGIIEKIQDTMYTLYSKEISEWPMGLKIVVGVLLTSLFG FT AGLWKLMGVLQGTGSVAALGVTAATHFGHEHGGARATAQSRKPNRYDVAQYKYRNVPIT FT KRAWAQGDMPISHATAMIFDRIKASWQYGHTEAQIAMVPGRRFIGYSHFFRTIERPIQV FT RIHTASGSQPLFYKPENMHYFEESELCVYEDSALQDIAHTCWDLFEWDFEQIQQDSFKA FT LFLSCKRKSSTGQPNPEWADIDVRTRSESLMVQEGEYSRVLPRYLEYTAPTVNHDCGSL FT IVAEVNKTFKIIGVHVAGSGGTKGYACLLPPLVKKVQAQHAQKYFDYLPFAEKEGEGIE FT KVAMLQKGIHIPLPTKTALVETPVEWHLDTPCDKYPSILSSEDPRLEVSGQTDYDPFKA FT GILKYKDPMGVLDNKLLVEVCEEIEQSWLDCKEEGETFEEVSLEQAINGVKDVDYMDRI FT PLATSEGFPHILSRAHGEKGKIRFVEGDSEEMMLIPGTSVSEALDIMEAQLENEVPTLI FT GIECPKDEKLPHRKIFEKPKTRCFSILPMEYNLLVRRRFLTFVRFIMRNRNVLPCQVGI FT NPYGMEWTDLAMRLKRKGNNILCCDYSSFDGLLSKQVMKAMSDMINNFCGGSESSKRKR FT EHLLMACCSRYAICKNTVWKVECGIPSGFPLTVICNSIFNEILIRYSFKAILRSQKIPD FT MIPVSFDEYVSMVVYGDDNLLSVSEVIKPYFDGKRLKDFLATLHITITDGKDKTSPFLQ FT FRRLEDCDFLKRGFKNRGLYWDAPEDKESLWAQLHYVNANNLEKHEAYKTNLVTVLREL FT FMWDKNECAALRRKALQRISWLEPSDLQTVAQIEAWYAGNRGKYLPDSSDSISMLLQKE FT NLGPLLAPQGEQRGIEITPTVRTANLAHESFKTAKNDEVWILCQTMYPHGRLPEGVIAV FT NWPVGTGRGGLPTSTWMDENLKRPTSELRKKLRCALDNGKRLVFATREGILPCNIMAVL FT LLALEKKMKPEESNVILSAAILQCKSLGYLPRECDFAF" XX SQ Sequence 6064 BP; 1709 A; 1121 C; 1516 G; 1718 T; 0 other; tattaaaatt ttattgaaat tttgataaac cgcaatcagg accagtgtcc gaccagttac 60 agttacattc tcaattactt gtgaaggtag gtaaggggct cagaaacctc tcagactact 120 attgagattg gaaatttgtc acgcgttttc ccaagctttc ttgggcaagc cattgtgtgc 180 ttgctactta gattgtcatt gagaacttaa gtgttgttag ttgttctgcg tttacatcat 240 tgctgtgccc tttacaagag gaatatcaga tattgcttgt aaacaccgtc acccatttgc 300 ttggttcaaa cataccgcag gctttaagcc attaaaataa tggcctgtgt tactttggat 360 cgagatcaac agagctatgc tctgatcccg tacgttacag acaaacatgt tacatggctt 420 ctgaagtgtt atgttcgagt gaacactttt gatcctgatt tcccggttac caagcgtctt 480 gagcgcctaa gacagcacca ttttgatctg ctgtgcttgg gttatggggc atttgttatg 540 cataggaatg ccatggcaca tgtgccacgc acagtggaga ctgctgattt tattttcgaa 600 gattatcatc agtttctctg tgatctggtg acaggaaatg ctggaatcac ccgccttaga 660 aaatacataa atgtttgcta tggtacttac ttggacatgg tccttgagtt tagtgcatgc 720 acacttgatg atgaagggga cgaagatttc gagctacaag gcctcaaaag ttgtttacac 780 agcttggcta attacattcc atccaccctg gatagggcca tttcatggtc aactaacaag 840 gttattgatg gtattcgagc gcgctttgaa gaggtggttg ctgaatggtg tcctatggca 900 atgcaggcct gttcctggat ttctaatatc tgggataaag ttaccgtatg ggtacaggaa 960 tccatagagg caatgcgctg gtttttaaaa ggagctcgtg aattgtttta ttatggagtg 1020 tccattttga cggccagctg tgttattggc attgtggaaa aaatattggt tgccacaaat 1080 ttgttggccc ccaatcgtgg acttgtcgaa gcttttttgt caagtgctgc tctgactggg 1140 gcatttatgt cgtttaagaa gaaggaggac ccaacgccaa tgataacaat gatttcagtt 1200 cttgctggag tggtttcagc tgctgttact gccatgtttg gcgcgccctg cgttgctgtg 1260 ttacaaggtc cagttgagtt gttagaaagc gctgctactg cgcttggaat tttctgtgag 1320 acaacattgt tgtctatggg aaaaacctgc caagcagtga accaaattag tacatgcgct 1380 ggaaacctga aggcaatggc aggaaaactc ttcggaattt tacaagattt catttggaag 1440 gtatttggaa tggaatctag atttttgcgt gatgcatccc tgatgttcga ggaagatgtc 1500 gaccagtggc tgaaagatat tgcagaatgt caagattcgt atttggcaaa agcttattct 1560 tcccaggatg acatcatgaa aatgcaagcc ctggttaaga aagggcatga tatgcgttcc 1620 aaagtgctaa aagtcaccag ccgcatttcc ccagttttag caaatacagt tacacgaggc 1680 gtcgagtcgg tggaaaaact gctacgagag tccttgtgtc agggagtgaa agcaacgagg 1740 aggattcctt ttgttgtgta tgcttacgga gaatctagaa ctggtaagac gttggttgta 1800 gataaactca tcacagattt ccagaaccat tttggtcttg ggaaagacac tgtttacagt 1860 agaaatccca ttgatcaata ctggagcgga taccgaagac aacctattgt gagtattgat 1920 gattttggag ctgtcacttg cgatccttct atggaagctc agatgatacc attggtatcg 1980 agtgcacctt tgcctctaac tatggctgcc attgaggaaa aaggaatgat gtttgactca 2040 aagttcatct tttgctcttc caatttgttg gaagcaagcc ctgaaagcaa actgcaagat 2100 aaccaagctt tccgcaatag gaggcatgtt ttgataaatg ttaagctgga tgctaccaag 2160 ccgtacaaca tgcatgactt cacggaaaac cagatctacc agattttgaa atacgacaac 2220 ggcacgtatg ttgtgcaggc cgagttccat acctatggtg acctgttctc atactgtctg 2280 gagagatggg agaagcacga aaatgagcaa acagcaaatc tcgccaacag cttggaagag 2340 ccaaaggcag acggagactt cataaacttc gagttcttga tgcacacact tattagacgg 2400 aatcttccgg acaagatggt tgatgttatc ttcgaggaga gaaccaaaac tcagtttgtg 2460 ccccttgtta cttacaggcg aaaaggaaaa ctctggagct attacgttag cccagaagga 2520 agaattcaaa caatagctga atcgcttgag gatccgaagg cccttgcaaa ggaagtagag 2580 tcaatggatt ttctgcggag gatgtatgag atgttgaggt acaatgagga aacagacttg 2640 attgtgaaga tgcatcttaa agacttagct agagaggact tctatgacga caaaatgaat 2700 tatatcggca cctttggaaa tgaaagggaa cacgcgttaa tgcgatccac ttttgattct 2760 atggcaggct ggcacaaagt tgtattgtgc ggaatgggag ttctccaaga tcgatgttcc 2820 tctgttaagt ggtatgatgg cataattgag aaaattcagg ataccatgta cacgttgtat 2880 agcaaggaaa taagcgagtg gccaatggga cttaagatcg ttgtcggagt tttactcaca 2940 tcactttttg gagctggact ttggaagttg atgggagttc tccagggaac aggtagcgta 3000 gctgccttgg gagtgactgc tgccacccac tttggccatg aacatggagg agctagagcc 3060 actgcacaaa gtaggaaacc taatcggtat gatgtggcgc agtacaagta cagaaacgtt 3120 cccatcacca agcgagcttg ggcacaggga gacatgccta ttagccatgc aacagcaatg 3180 atttttgatc gcatcaaggc aagctggcaa tacgggcaca cggaagctca gattgcaatg 3240 gtgcctggaa gacgcttcat cggttattct catttctttc gtacaataga acgtccaatt 3300 caagtgcgga tacatacagc tagtggttct cagcccttgt tttacaagcc tgagaatatg 3360 cattattttg aggaaagtga gctttgcgtg tacgaagata gtgctctcca ggatatagcg 3420 catacgtgtt gggacctgtt tgagtgggat tttgaacaga ttcagcaaga ttctttcaaa 3480 gcgttgtttc tttcatgtaa gaggaagagc agcacgggac aaccaaatcc agagtgggct 3540 gatatagatg tgagaacacg ctcagaatca cttatggtgc aggaaggaga gtactcacgt 3600 gttctcccac gctatttgga gtacacggca cctacagtta accacgattg tggttccttg 3660 attgtggctg aagtgaacaa gacgttcaag attattggtg ttcatgtagc tggctctggc 3720 ggtaccaaag gatatgcttg tttgttgccc ccacttgtta agaaagttca agcacaacat 3780 gctcagaagt attttgacta cctgccattt gcggagaaag aaggtgaggg catagaaaag 3840 gttgctatgt tacagaaagg cattcacatt cccttaccca caaaaacagc tctggttgag 3900 acacctgttg agtggcacct ggacacgccc tgtgataagt accccagcat cctgtctagt 3960 gaagatcctc gtttggaggt gtccggccaa accgactatg atccattcaa ggctggcatt 4020 ttaaaataca aagatcctat gggtgttttg gacaacaagt tgctggtgga ggtttgtgag 4080 gagattgagc agagctggct ggattgtaaa gaagagggag aaacgtttga ggaagttagt 4140 ttggaacaag ccatcaatgg agtcaaagat gttgactata tggatagaat tccactcgca 4200 acatcagaag gatttcctca tatcttgtcc cgagcacatg gtgagaaagg caaaatacgt 4260 tttgtggaag gtgattctga ggaaatgatg ctgattccag gaaccagtgt gtcagaagct 4320 cttgacatta tggaggccca gctggagaat gaagttccaa ctctaattgg aatagagtgc 4380 cccaaagatg agaaactgcc acatcggaag atatttgaga agcctaagac acgttgtttt 4440 tctattttac caatggaata caatttgttg gtgcgtagaa ggttcttgac ttttgtccgc 4500 tttattatgc gaaacaggaa tgtgctacca tgtcaggttg ggattaatcc ttatggcatg 4560 gagtggacgg atctagcaat gcgtttaaag agaaagggca acaacatctt gtgctgtgat 4620 tacagtagtt tcgatgggtt gctttccaag caagtaatga aggctatgtc tgacatgata 4680 aacaatttct gtggtggtag tgagagttcc aaacgaaagc gagagcactt gctaatggct 4740 tgttgttctc gatatgccat ttgtaaaaac acagtatgga aggttgagtg tggtattcca 4800 tctggttttc ctctcaccgt gatatgcaat tccattttca atgagatttt aattagatac 4860 agcttcaagg caatcttgcg ctctcagaag atacccgata tgattccggt gagtttcgat 4920 gaatatgtga gcatggttgt ctatggagat gacaatttgc tgtcggtgag tgaggtcatt 4980 aagccctatt ttgatggaaa acgattgaag gattttttag ccactctcca tatcactatc 5040 actgacggga aggacaaaac aagcccattt ctacaatttc ggcgtttgga ggactgtgac 5100 tttctcaaga gaggttttaa aaaccgaggt ttgtattggg atgctccaga ggataaggag 5160 agtttgtggg cacagcttca ttatgtgaat gccaacaatc tcgaaaagca tgaagcctat 5220 aagacaaatc tcgtgactgt tttacgcgag ctgttcatgt gggacaagaa tgagtgtgct 5280 gcgctcagaa gaaaggcact tcagagaatt tcatggttgg agccaagtga tttacaaacg 5340 gttgctcaga tagaagcgtg gtatgctgga aatagaggaa agtatctacc agattcgagt 5400 gatagcataa gcatgcttct acagaaggag aacttgggac ctttattggc accccaagga 5460 gagcagaggg gaatagaaat cacacccacg gtgagaactg ccaatttggc acatgaaagc 5520 tttaaaacag ctaagaatga tgaagtgtgg attttgtgtc aaacaatgta tccacatggg 5580 cgtttaccag agggagttat tgctgttaat tggccagttg ggacaggaag aggtggcttg 5640 ccaacgtcaa cttggatgga tgagaacctc aagcgtccca catctgagct tcggaaaaaa 5700 ctgaggtgtg ctttggacaa tggcaagaga ttggtctttg ctacacgaga aggaattctg 5760 ccgtgtaaca ttatggctgt gttacttttg gcacttgaaa agaagatgaa gccagaggag 5820 agtaatgtta tcttgtccgc agctattcta caatgtaaat cattaggtta tttgcctaga 5880 gagtgtgatt ttgcttttta aaatttgtac atcttctttg tgcatttgaa agtctgtgga 5940 aatgcactgg ttcatggaac aggaccccct aggaggtagg actctgggtt ttattgttct 6000 tgtgtgctat atataaatta ccataaatat cgttttagtt tctatataga tatttggtta 6060 tttt 6064 //