ID AB287441; SV 1; circular; genomic DNA; STD; VRL; 2762 BP. XX AC AB287441; XX DT 13-JUN-2007 (Rel. 92, Created) DT 06-JUL-2018 (Rel. 137, Last updated, Version 5) XX DE Honeysuckle yellow vein virus DNA, complete genome. XX KW . XX OS Honeysuckle yellow vein virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2762 RA Ogawa T., Ikegami M.; RT ; RL Submitted (15-DEC-2006) to the INSDC. RL Contact:Masato Ikegami Tohoku University, Graduate School of Agricultural RL Science; 1-1 Tutumidori-Amamiyamachi, Aoba-ku Sendai, Miyagi 981-8555, RL Japan XX RN [2] RX DOI; .1016/j.virusres.2008.07.021. RX PUBMED; 18722488. RA Ogawa T., Sharma P., Ikegami M.; RT "The begomoviruses Honeysuckle yellow vein mosaic virus and Tobacco leaf RT curl Japan virus with DNAbeta satellites cause yellow dwarf disease of RT tomato"; RL Virus Res. 137(2):235-244(2008). XX DR MD5; 50f72e29bc110c7e6c2667aee83ca60f. XX FH Key Location/Qualifiers FH FT source 1..2762 FT /organism="Honeysuckle yellow vein virus" FT /host="Lonicera japonica" FT /lab_host="Nicotiana benthamiana" FT /mol_type="genomic DNA" FT /country="Japan:Nara, Uda-gun" FT /isolation_source="honeysuckle with yellow vein symptoms" FT /collection_date="1995-06-23" FT /clone="pBSHNTP1" FT /tissue_type="leaf" FT /note="originally submitted 'Honeysuckle yellow vein mosaic FT virus-[Nara2]'" FT /db_xref="taxon:240865" FT CDS 137..487 FT /codon_start=1 FT /transl_table=1 FT /gene="V2" FT /product="V2 protein" FT /db_xref="GOA:A5LHH6" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:A5LHH6" FT /protein_id="BAF64259.1" FT /translation="MWDPLLNDFPETVHGFRCMLAVKYLLLVESTYSPDTVGFDLIRDL FT ILVVRAKNYVEATCRYRDFHSRLQGTSTSELRRPVCQPCECPHCPRHKQKEIVGSKAHV FT SEAQDIQDVQKP" FT CDS 297..1070 FT /codon_start=1 FT /transl_table=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:A5LHH1" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:A5LHH1" FT /protein_id="BAF64260.1" FT /translation="MSKRPADIGIFTPAFRARRRLNFDGPYVNRVSVPIAQGTSKKRSW FT AQRPMYRKPRIYRMYRSPDVPKGCEGPCKVQSFEKKDDVGHSGKMLCISDITRGNGLTH FT RVGKRFCIKSVYIIGKIWMDENIKLKNHTNNVIFWLVRDRRPVSVPYGFQEAFNMYENE FT PSTATIKQDLRDRLQVLHKFSGTVTGGQYASKEQAMIKRFWRLNHHVTYNHQEAAKYEN FT HTENALLLYMACTHASNPVYATLKIRVYFYDSVQN" FT CDS complement(1067..1471) FT /codon_start=1 FT /transl_table=1 FT /gene="C3" FT /product="C3 protein" FT /db_xref="GOA:A5LHH8" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:A5LHH8" FT /protein_id="BAF64261.1" FT /translation="MDSRTGDTITAAQAWNGAYIWTVPNPLYFKITSHAQRPFNMDQDI FT ITIQIQFNHNLRSQLGLHKCFLTFKIWTHLQPLTSYFLNVFRKRVLEYLDNLGVISINN FT VIRAVDHVLYDVLRGTESVQQFTDIKFNLY" FT CDS complement(1212..1619) FT /codon_start=1 FT /transl_table=1 FT /gene="C2" FT /product="C2 protein" FT /db_xref="GOA:A5LHH9" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:A5LHH9" FT /protein_id="BAF64262.1" FT /translation="MRPSSPSTAHSTQVPIKVQHRLGKRKAPRRRRIDLNCGCSIYVAL FT GCANNGFTHRGHHHCSSGMEWRVYLDSAKSPIFQNHEPRSTAIQHGPGHNNDTDPIQPQ FT PEVSTGSTQVLPDLQDLDSLTTSDLLFLECI" FT CDS complement(1519..2610) FT /codon_start=1 FT /transl_table=1 FT /gene="C1" FT /product="replication associated protein" FT /function="required for initiation of rolling-circle FT replication" FT /db_xref="GOA:A5LHI0" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:A5LHI0" FT /protein_id="BAF64263.1" FT /translation="MAPPKRFQINAKNYFLTYPHCSLTKEEALSQIQALDTITNKLFIR FT ICRELHEDGSPHLHVLIQFEGKYKCTNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKAYM FT EKDGDVVDYGVFQVDGRSARGGCQSANDAYAEAINSGSKSAALSILREKAPKDFVLQFH FT NLNSNLDRIFSPPLEEFVCPFLSSSFDRVPEELEEWAAENVRDSAARPWRPMSIVIEGD FT SRTGKTMWARSLSPHHNYLCGHLDLSPKVYSNSAWYNVIDDVDPHYLKHFKEFMGAQRD FT WQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYTEYLDEDKNAALKAWAIKNASFVTLYGP FT LYSSSHQGSAQIREEESTSQAED" FT CDS complement(2160..2453) FT /codon_start=1 FT /transl_table=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:A5LHI1" FT /protein_id="BAF64264.1" FT /translation="MGALISTFSSSSRENTSARIKDSSTSSPQLGQHISIRTFRELRAR FT QTSKPTWRKTETSLIMEFSRSMEDQLEEVANLPTTLMPRQSTQALNQRPCLY" XX SQ Sequence 2762 BP; 727 A; 559 C; 645 G; 831 T; 0 other; accggatggc cgcccgaaat ttcgtggtgg gccccccctt gtcgaccaat agagttcgtg 60 ccttgaaagt tagataagtg gatgttgacg tcacttttgt ctttatatac gtcagcccta 120 attttaaagg ttaaagatgt gggatccttt acttaatgat ttccctgaaa ccgtacacgg 180 ttttaggtgt atgttagcgg ttaaatacct tcttcttgtt gagtctacat actctccgga 240 tacggtgggt ttcgatttga tacgtgatct tatactcgtt gttcgtgcga agaattatgt 300 cgaagcgacc tgcagatata gggattttca ctcccgcctt cagggcacgt cgacgtctga 360 acttcgacgg cccgtatgtc aaccgtgtga gtgtccccat tgcccaaggc acaagcaaaa 420 agagatcgtg ggctcaaagg cccatgtatc ggaagcccag gatatacagg atgtacagaa 480 gccctgatgt accgaagggg tgtgaaggtc cgtgtaaggt ccagtctttc gagaagaaag 540 atgatgttgg tcactctggt aaaatgttat gtatctccga tattactcgt ggtaatggac 600 ttactcatcg tgtgggtaag agattttgta taaaatctgt ctatatcatt ggaaagatat 660 ggatggatga gaacattaag ctcaagaatc acactaataa cgtgatcttc tggcttgtca 720 gagataggcg ccctgtgtcc gttccttatg gtttccaaga ggcgtttaat atgtatgaaa 780 atgaacctag tacagctacg atcaagcagg atctgagaga tcgcttgcag gtgttacaca 840 agttttctgg tacggttaca ggtggacaat atgcgtctaa ggaacaagct atgatcaagc 900 gtttctggag gttgaatcat catgtcacct acaatcacca ggaggctgct aaatatgaga 960 accatactga aaatgcatta ttattgtata tggcttgtac tcatgccagt aatccagtgt 1020 atgctacatt aaaaatcaga gtgtatttct acgattcagt acaaaattaa taaagattga 1080 attttatatc agtaaattgc tgtacagatt cagttcctct caatacatcg tacaatacat 1140 gatcaactgc cctaattaca ttgttaattg aaattacacc caaattatct aaatactcta 1200 atacacgttt tctaaataca ttcaagaaat aggaggtcag aggttgtaag tgagtccaga 1260 tcttgaaggt caggaagcac ttgtgtagac ccagttgaga cctcaggttg tggttgaatt 1320 ggatctgtat cgttattatg tcctggtcca tgttgaatgg ccgttgagcg tggctcgtga 1380 ttttgaaata taggggattt ggcactgtcc agatatacgc gccattccat gcctgagctg 1440 cagtgatggt gtcccctgtg cgtgaatcca ttgttagcac agcctaatgc gacgtaaata 1500 gaacacccgc agtttagatc aatcctccgc ctgcgaggtg ctttcctctt ccctaatctg 1560 tgctgaacct tgatgggaac ttgagtagag tgggccgtag agggtgacga aggacgcatt 1620 tttaattgcc catgctttta gtgcggcgtt cttgtcctca tctaaatact cggtgtatga 1680 tgacgttggg cctggattgc agaggaagat tgttgggata ccacctttaa tttgaattgg 1740 tttcccgtat ttggtgttgc tttgccagtc cctttgggcc cccatgaatt ctttaaagtg 1800 ctttaggtag tggggatcca cgtcatcaat cacgttgtac caggcgctgt tgctgtaaac 1860 cttggggctt aagtcaagat ggccgcaaag gtaattgtga tgtgggctca acgacctggc 1920 ccacatggtc tttcctgtcc tgctgtcccc ctcaatcaca atactcatgg gcctccacgg 1980 ccgcgcagcg gaatccctga cgttctctgc agcccattcc tcgagttctt ccggaactcg 2040 atcaaaggaa gaagaaagaa aaggacaaac aaattcctcc aacggaggac taaaaatcct 2100 atctaaatta ctatttaaat tatgaaattg taaaacaaaa tctttgggag ctttctccct 2160 taatatagac aaggccgctg atttagagcc tgagttgatt gcctcggcat aagcgtcgtt 2220 ggcagattgg caacctcctc tagctgatct tccatcgacc tggaaaactc cataatcaac 2280 gacgtctccg tctttctcca tgtaggcttt gacgtctgac gagctcttag ctccctgaat 2340 gttcggatgg aaatgtgctg acctagttgg ggagacgagg tcgaagaatc tttgattcgt 2400 gcacttgtat tttccctcga actggatgag aacgtggaga tgagggctcc catcttcgtg 2460 tagttctctg caaattctga tgaataattt atttgttata gtatctaggg cttgtatctg 2520 agagagtgcc tcttcttttg ttagggagca gtgagggtaa gtgaggaaat aatttttggc 2580 atttatttga aatcgttttg gaggagccat tgacttggtc aattggtacc aattgatctc 2640 ttctctggta tcggtacatt ggtaccaata tatagtctgg taccaaatgg cattattgta 2700 attaataaag taatttgaaa ttcaaaattc aaattgggta aagcggccat ccgtataata 2760 tt 2762 //