ID AB287440; SV 1; circular; genomic DNA; STD; VRL; 2762 BP. XX AC AB287440; XX DT 13-JUN-2007 (Rel. 92, Created) DT 06-JUL-2018 (Rel. 137, Last updated, Version 5) XX DE Honeysuckle yellow vein virus DNA, complete genome, isolate: Nara1. XX KW . XX OS Honeysuckle yellow vein virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2762 RA Ogawa T., Ikegami M.; RT ; RL Submitted (15-DEC-2006) to the INSDC. RL Contact:Masato Ikegami Tohoku University, Graduate School of Agricultural RL Science; 1-1 Tutumidori-Amamiyamachi, Aoba-ku Sendai, Miyagi 981-8555, RL Japan XX RN [2] RX DOI; .1016/j.virusres.2008.07.021. RX PUBMED; 18722488. RA Ogawa T., Sharma P., Ikegami M.; RT "The begomoviruses Honeysuckle yellow vein mosaic virus and Tobacco leaf RT curl Japan virus with DNAbeta satellites cause yellow dwarf disease of RT tomato"; RL Virus Res. 137(2):235-244(2008). XX DR MD5; 209c0df81ebd10d1698eab45838ea2bf. XX FH Key Location/Qualifiers FH FT source 1..2762 FT /organism="Honeysuckle yellow vein virus" FT /host="Lonicera japonica" FT /lab_host="Nicotiana benthamiana" FT /isolate="Nara1" FT /mol_type="genomic DNA" FT /country="Japan:Nara, Uda-gun" FT /isolation_source="honeysuckle with yellow vein symptoms" FT /collection_date="1995-06-23" FT /clone="pBSHNG-1" FT /tissue_type="leaf" FT /note="originally submitted 'Honeysuckle yellow vein mosaic FT virus-[Nara1]'" FT /db_xref="taxon:240865" FT CDS 136..486 FT /codon_start=1 FT /transl_table=1 FT /gene="V2" FT /product="V2 protein" FT /db_xref="GOA:A5LHH0" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:A5LHH0" FT /protein_id="BAF64253.1" FT /translation="MWDPLLNDFPETVHGFRCMLAVKYLLLVESTYSPDTVGYDLIRDL FT ILVVRAKNYVEATCRYRDFHSRLQGTSASELRRPVCQPCECPHCPRHKQKEIMGSKAHV FT SEAQDIQDVQKP" FT CDS 296..1069 FT /codon_start=1 FT /transl_table=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:A5LHH1" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:A5LHH1" FT /protein_id="BAF64254.1" FT /translation="MSKRPADIGIFTPAFRARRRLNFDGPYVNRVSVPIAQGTSKKRSW FT AQRPMYRKPRIYRMYRSPDVPKGCEGPCKVQSFEKKDDVGHSGKMLCISDITRGNGLTH FT RVGKRFCIKSVYIIGKIWMDENIKLKNHTNNVIFWLVRDRRPVSVPYGFQEAFNMYENE FT PSTATIKQDLRDRLQVLHKFSGTVTGGQYASKEQAMIKRFWRLNHHVTYNHQEAAKYEN FT HTENALLLYMACTHASNPVYATLKIRVYFYDSVQN" FT CDS complement(1066..1470) FT /codon_start=1 FT /transl_table=1 FT /gene="C3" FT /product="C3 protein" FT /db_xref="GOA:A5LHH2" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:A5LHH2" FT /protein_id="BAF64255.1" FT /translation="MDSRTGDTITAAQAWNGAYIWTVPNPLYFKITSHAQRPFNMDQDI FT ITLQIQFNHNLRSQLGLHKCFLTFKIWTHLQPLTSYFLNVFRKRVLEYLDNLGVISINN FT VIRAVDHVLYDVLRGTEYVQQSQDIKFKLY" FT CDS complement(1211..1618) FT /codon_start=1 FT /transl_table=1 FT /gene="C2" FT /product="C2 protein" FT /db_xref="GOA:A5LHH3" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:A5LHH3" FT /protein_id="BAF64256.1" FT /translation="MRPSSPSTAHSTQVPIKVQHRIGKKRAPRRRRIDLNCGCSIYVAL FT GCANNGFTHRGHHHCSSGMEWRVYLDSAKSPIFQNHEPRSTAIQHGSGHNNVTDSVQPQ FT PEVSTGSTQVLPDLQDLDSLTTSDLLFLECI" FT CDS complement(1518..2609) FT /codon_start=1 FT /transl_table=1 FT /gene="C1" FT /product="replication associated protein" FT /function="required for initiation of rolling-circle FT replication" FT /db_xref="GOA:A5LHH4" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:A5LHH4" FT /protein_id="BAF64257.1" FT /translation="MAPPKRFRIYSKNYFLTYPHCSLTKEEALSQIQALETPTNKLFIR FT ICRELHEDGSPHLHVLIQFEGKYQCTNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKTYM FT EKDGDVLDFGLFQVDGRSARGGCQSANDAYAEAINSGSKSSALSILREKAPKDFVLQFH FT NLNSNLDRIFTPPLEAFVCPFLSSSFDRVPEELEEWAAENVRESAARPWRPMSIVIEGD FT SRTGKTMWARSLSPHHNYLCGHLDLSPKVYSNSAWYNVIDDVDPHYLKHFKEFMGAQRD FT WQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYTEYLDEDKNAALKAWAIKNASFVTLYGP FT LYSGSHQGSAQNREEESTSQAED" FT CDS complement(2159..2458) FT /codon_start=1 FT /transl_table=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:A5LHH5" FT /protein_id="BAF64258.1" FT /translation="MKMGALISMFSSSSRANTNAPINDSSISSPQLGQHISIRTFRELR FT ARQMLRPTWRKTETSLILDFSRSMEDQLEEVASLPTTHTPRQSTQDLSHRPCLY" XX SQ Sequence 2762 BP; 734 A; 562 C; 643 G; 823 T; 0 other; accggatggc cgcccgaaat ttcgtagtgg gccccctatg tcggccaata gagttcgtgc 60 cttgaaagtt agataagtgg atgttgacgt cacttttgtc tttatatacg tcagccctaa 120 ttttaaaggt taaagatgtg ggatccttta cttaatgatt tccctgaaac cgtacacggt 180 tttaggtgta tgctagcggt taaatacctt cttcttgttg agtctaccta ctctccggat 240 acggtgggtt acgatcttat acgtgatctt atacttgttg ttcgtgcgaa gaattatgtc 300 gaagcgacct gcagatatag ggattttcac tcccgccttc agggcacgtc ggcgtctgaa 360 cttcgacggc ccgtatgtca accgtgtgag tgtccccatt gcccaaggca caagcaaaaa 420 gagatcatgg gctcaaaggc ccatgtatcg gaagcccagg atatacagga tgtacagaag 480 ccctgatgta ccgaaggggt gtgaaggtcc gtgtaaggtc cagtctttcg agaagaaaga 540 tgatgttggt cactctggta aaatgttatg tatctccgat attactcgtg gtaatggact 600 tactcatcgt gtgggtaaga gattttgtat aaaatctgtc tatatcattg gaaagatatg 660 gatggatgag aacattaagc ttaagaatca cactaataac gtgatcttct ggcttgttag 720 agataggcgc cctgtgtccg ttccttatgg gttccaagag gcgtttaata tgtatgaaaa 780 tgaacctagt acagctacta tcaagcagga tctgagagat cgcttgcagg tgttacacaa 840 gttcagtggt acggttacag gtggacaata tgcgtctaag gaacaagcta tgatcaagcg 900 tttctggagg ttgaatcatc atgtcacgta caatcaccag gaggctgcta aatatgagaa 960 ccatactgaa aatgcattat tattgtatat ggcttgtact catgccagta atccagtgta 1020 tgctacatta aaaattagag tgtatttcta cgattcagta caaaattaat aaagtttgaa 1080 ttttatatct tgagattgct gtacatactc tgttcctctc aatacatcgt acaatacatg 1140 atcaactgcc ctaattacat tgttaattga aattacaccc aaattatcta aatactctaa 1200 tacacgtttc ctaaatacat tcaagaaata agaggtcaga ggttgtaagt gagtccagat 1260 cttgaaggtc aggaagcact tgtgtagacc cagttgagac ctcaggttgt ggttgaactg 1320 aatctgtaac gttattatgt cctgatccat gttgaatggc cgttgagcgt ggctcgtgat 1380 tttgaaatat aggggatttg gcactgtcca gatatacgcg ccattccatg cctgagctgc 1440 agtgatggtg tcccctgtgc gtgaatccat tgttagcaca gcctaatgcg acgtaaatag 1500 aacacccgca gtttaagtca atcctccgcc tgcgaggtgc tctcttcttc cctattctgt 1560 gctgaacctt gatgggaacc tgagtagagt gggccgtaga gggtgacgaa ggacgcattt 1620 ttaattgccc atgcctttag tgcggcgttc ttgtcctcat ctaaatactc ggtgtatgat 1680 gacgttgggc ctggattgca gaggaagatt gttgggatac cacctttaat ttgaattggt 1740 ttcccgtact tggtgttgct ttgccagtcc ctttgggccc ccatgaattc cttaaagtgc 1800 tttagatagt ggggatccac gtcatcaatc acgttgtacc aggcgctgtt gctgtaaacc 1860 ttggggctta agtcaagatg gccgcaaagg taattgtgat gtgggctcaa cgacctggcc 1920 cacatggtct tccctgtcct gctatccccc tcaatcacaa tactcatggg cctccacggc 1980 cgcgcagcgg attcccttac gttttctgca gcccattcct cgagttcttc tggaactcga 2040 tcaaaagaag aagaaagaaa aggacaaaca aatgcctcca acggaggagt aaaaatccta 2100 tctaaattac tatttaaatt atgaaattgt aaaacaaaat ctttgggagc tttctccctt 2160 aatatagaca aggccgatga cttagatcct gagttgattg cctcggcgta tgcgtcgttg 2220 gcagactggc aacctcctct agctgatctt ccatcgacct ggaaaagtcc aaaatcaagg 2280 acgtctccgt ctttctccat gtaggtctta acatctgacg agctcttagc tccctgaatg 2340 ttcggatgga aatgtgctga cctagttggg gagacgagat cgaagaatcg ttgattggtg 2400 cattggtatt tgccctcgaa ctggatgaga acatggagat gagggctccc atcttcatga 2460 agttctcgac aaattcggat gaacaattta ttggtgggtg tttctagggc ttgaatctgt 2520 gaaagggctt cttctttagt gagagagcag tgtgggtatg tgaggaaata atttttgcta 2580 tatattctaa aacgtttcgg tggagccata tttacaaata tgcccttgta caccgattgg 2640 gagagaaaac ttctttgcag tcaatcggtg tattggtgtg cattatatac tcctctatct 2700 ttttaagttt gaatttcaaa attcaaaatt caaattggta aagcggccat ccgtataata 2760 tt 2762 //