ID AB287439; SV 1; circular; genomic DNA; STD; VRL; 2763 BP. XX AC AB287439; XX DT 13-JUN-2007 (Rel. 92, Created) DT 06-JUL-2018 (Rel. 137, Last updated, Version 5) XX DE Honeysuckle yellow vein virus DNA, complete genome, isolate: DE Honeysuckle:Ibaraki. XX KW . XX OS Honeysuckle yellow vein virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2763 RA Ogawa T., Ikegami M.; RT ; RL Submitted (15-DEC-2006) to the INSDC. RL Contact:Masato Ikegami Tohoku University, Graduate School of Agricultural RL Science; 1-1 Tutumidori-Amamiyamachi, Aoba-ku Sendai, Miyagi 981-8555, RL Japan XX RN [2] RX DOI; .1016/j.virusres.2008.07.021. RX PUBMED; 18722488. RA Ogawa T., Sharma P., Ikegami M.; RT "The begomoviruses Honeysuckle yellow vein mosaic virus and Tobacco leaf RT curl Japan virus with DNAbeta satellites cause yellow dwarf disease of RT tomato"; RL Virus Res. 137(2):235-244(2008). XX DR MD5; a98d2a083968c2300e218dd332e9aa17. XX FH Key Location/Qualifiers FH FT source 1..2763 FT /organism="Honeysuckle yellow vein virus" FT /host="Lonicera japonica" FT /lab_host="Nicotiana benthamiana" FT /isolate="Honeysuckle:Ibaraki" FT /mol_type="genomic DNA" FT /country="Japan:Ibaraki" FT /isolation_source="honeysuckle with yellow vein symptoms" FT /collected_by="Masato Ikegami" FT /collection_date="2001" FT /clone="pBSHIG-1" FT /tissue_type="leaf" FT /note="originally submitted 'Tobacco leaf curl Japan FT virus-[Honeysuckle:Ibaraki]'" FT /db_xref="taxon:240865" FT CDS 138..488 FT /codon_start=1 FT /transl_table=1 FT /gene="V2" FT /product="V2 protein" FT /db_xref="GOA:A5LHG4" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:A5LHG4" FT /protein_id="BAF64247.1" FT /translation="MWDPLLNEFPETVHGFRCMLAVKYLLSVEATYSPDTIGYDLIRDL FT IGVIRAKNYVEASCRYRDFHSRLQGTAPSELRQPVCQPCECPHCPRHKPKESMGSKAHV FT SEAQDVQNVQKP" FT CDS 298..1071 FT /codon_start=1 FT /transl_table=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:A5LHG5" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:A5LHG5" FT /protein_id="BAF64248.1" FT /translation="MSKRPADIGIFTPVSKVRRRLNFDSPYANRVSAPIALATNRRRAW FT AQRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSFEKKNDVGHSGTLLCVSDITRGNGLTH FT RVGKRFCIKSVYIIGKIWMDENIKTKNHTNNVLFWLVRDRRPGSTPYGFQEAFNMFENE FT PSTATVKQELRDRLQVLHRFSATVTGGQYASKEQAIIKRFWKLNHHVTYNHQEQAKYEN FT HTENALLLYMAATHASNPVYATLKIRVYFYDSVQN" FT CDS complement(1068..1472) FT /codon_start=1 FT /transl_table=1 FT /gene="C3" FT /product="C3 protein" FT /db_xref="GOA:A5LHG6" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:A5LHG6" FT /protein_id="BAF64249.1" FT /translation="MDSRTGDTITAAQAWNGAYIWTVPNPLYFKITNHAQRPFNMDQDI FT ITIQIQFNHNLRSQLDLHKCFLTFKIWTHLQPLTSYFLNTFRTNVLDYLDNLGVISINN FT VIRAVDHVLYDVLGGTEYVQQLNDIKFKLY" FT CDS complement(1213..1620) FT /codon_start=1 FT /transl_table=1 FT /gene="C2" FT /product="C2 protein" FT /db_xref="GOA:A5LHG7" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:A5LHG7" FT /protein_id="BAF64250.1" FT /translation="MRPSSPSTAHSTQVPIKVQHKIGKTRAPRRRRIDLNCGCSIYVAL FT DCANHGFTHRGHHHCSSGMEWRVYLDSTKSPIFQNHEPRSTAIQHGSGHNNDTDTVQPQ FT PQVSTGSTQVLPDLQDLDSLTTSDLLFLEYI" FT CDS complement(1520..2611) FT /codon_start=1 FT /transl_table=1 FT /gene="C1" FT /product="replication associated protein" FT /function="required for initiation of rolling-circle FT replication" FT /db_xref="GOA:A5LHG8" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:A5LHG8" FT /protein_id="BAF64251.1" FT /translation="MAPPNRFRINSKNYFLTYPHCSLTKEEALSQIQSLQTPTNKLFIR FT ICRELHEDGSPHLHVLIQFEGKYQCTNQRFFDLVSPTRSAHFHPNIQAAKSSSDVKTYM FT EKDGDVADFGVFQIDGRSARGGCQSANDAYAEAINSGSKSSALNILREKAPKDFVLQFH FT NLNSNLDRIFTPPLEVFVSPFLSSSFDRVPEALEEWAAENVRDSAARPWRPMSIVIEGD FT SRTGKTMWARSLSPHHNYLCGHLDLSPKVYNNSAWYNVIDDVDPHYLKHFKEFMGAQRD FT WQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYTEYLDEDKNGALKAWAIKNATFITLYGP FT LYSGSHQGSAQNREDESTSQTED" FT CDS complement(2161..2454) FT /codon_start=1 FT /transl_table=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:A5LHG9" FT /protein_id="BAF64252.1" FT /translation="MGALISTCSSSSRENTNAQINDSSTSSPQLGQHISIRTFRRLRAR FT QMLRPTWRKTETSLILECSRSMEDQLEEVASLPTTHMPRQSTQDLSHRHSIY" XX SQ Sequence 2763 BP; 732 A; 555 C; 635 G; 841 T; 0 other; accggatggc cgcccgaaat ttcgtggtgg gccccccctt gtcggccaat gatattcgtc 60 tctcgaatcc tagataagtg gatagtgacg tatgcttttg tctttatata cgtcagccct 120 aattttaaac tttaaccatg tgggatcctt tacttaacga atttcctgaa accgttcacg 180 gttttaggtg tatgcttgcg gttaagtact tgttatcggt agaagctaca tactctccgg 240 ataccatagg ttatgatttg attcgtgatc ttataggtgt cattcgtgcc aagaactatg 300 tcgaagcgtc ctgcagatat agggattttc actcccgtct ccaaggtacg gcgccgtctg 360 aacttcgaca gcccgtatgc caaccgtgtg agtgccccca ttgccctcgc cacaaaccga 420 aggagagcat gggctcaaag gcccatgtat cggaagccca ggatgtacag aatgtacaga 480 agccctgatg tgcctaaggg gtgtgaaggc ccgtgtaagg tccagtcatt cgagaagaaa 540 aatgatgttg gtcattctgg tactctgctc tgtgtatctg atattacccg tggtaatggg 600 cttactcatc gtgttgggaa gagattttgt ataaaatcag tttatataat tggtaaaata 660 tggatggatg aaaatattaa gaccaagaat cacactaaca acgtgttatt ctggttggtt 720 agagatagac gacctggttc aaccccttat ggatttcagg aggcattcaa tatgtttgag 780 aatgaaccca gcacggcgac tgttaagcaa gaattaagag atcgtttgca ggttttacac 840 agatttagtg cgactgttac tggtggacaa tatgcgtcta aggaacaagc gatcataaaa 900 cggttttgga agttgaatca tcatgtcact tacaatcatc aagagcaggc taaatatgag 960 aatcatactg aaaatgcttt attattgtat atggctgcta ctcatgccag taatcctgtg 1020 tatgctactt taaagatcag agtgtatttc tatgattcag tgcaaaatta ataaagtttg 1080 aattttatat catttaattg ctgtacatat tccgttcctc ccaatacatc gtacaataca 1140 tgatcaactg ccctaattac attgtttatt gaaattacac ccaaattatc taaataatct 1200 aatacatttg tcctaaatgt attcaagaaa taggaggtca gaggttgtaa gtgagtccag 1260 atcttgaagg tcaggaagca cttgtgtaga tccagttgag acctgaggtt gtggttgaac 1320 tgtatctgta tcgttattat gtcctgatcc atgttgaatg gccgttgagc gtggttcgtg 1380 attttgaaat ataggggatt tggtactgtc cagatatacg cgccattcca tgcctgagct 1440 gcagtgatgg tgtcccctgt gcgtgaatcc atggtttgca caatccagag cgacgtaaat 1500 agaacaaccg cagtttaggt caatcctccg tctgcgaggt gctctcgtct tccctatttt 1560 gtgctgaacc ttgatgggaa cctgagtaga gtgggccgta gagggtgatg aaggtcgcat 1620 ttttaattgc ccatgccttt agtgcgccgt tcttgtcctc atctaaatac tcggtgtacg 1680 atgacgttgg tcctggattg cagaggaaga ttgttgggat accaccttta atttgaattg 1740 gtttcccgta ctttgtgttg ctttgccagt ccctttgggc ccccatgaat tccttaaagt 1800 gctttaggta gtggggatcc acgtcatcaa tcacgttgta ccaggcgctg ttgttgtaaa 1860 ccttggggct taagtcaaga tggccgcaaa gatagttatg atgtgggctc aacgacctgg 1920 cccacatggt cttccctgtt ctgctatccc cctcaatcac aatactcatg ggcctccatg 1980 gccgcgcagc ggaatccctg acgttctctg ccgcccattc ttcgagtgct tccggaactc 2040 gatcaaagga agaagataaa aaaggagaaa caaaaacctc caacggagga gtaaaaatcc 2100 tatctaaatt actgtttaaa ttatgaaatt gtaaaacaaa atctttggga gctttctccc 2160 ttaatatatt gagtgccgat gacttagatc ctgagttgat tgcctcggca tatgcgtcgt 2220 tggcagactg gcaacctcct ctagctgatc ttccatcgat ctggaacact ccaaaatcag 2280 cgacgtctcc gtctttctcc atgtaggtct taacatctga cgagctctta gccgcctgaa 2340 tgttcggatg gaaatgtgct gacctagttg gggagacgag gtcgaagaat cgttgatttg 2400 tgcattggta ttttccctcg aactggatga gcacgtggag atgagggctc ccatcttcat 2460 gtagttcacg acagattcgg ataaacaatt tatttgttgg tgtttgtaag gattgaattt 2520 gggaaagtgc ttcttctttg gttagagagc agtgtggata tgtgagaaaa taatttttgc 2580 tatttattcg aaaacgattt ggtggtgcca tatttacaaa tatgcccttg tacaccgatt 2640 gggagagaaa aactctttgc tatgaatcgg tgtattggtg tacaatatat actcctctat 2700 cttttgaaaa gtaatttgaa aattcaaaat tcaaattggt aaagcggcca tccgtataat 2760 att 2763 //