ID AB279740; SV 2; linear; genomic RNA; STD; VRL; 3709 BP. XX AC AB279740; XX DT 26-OCT-2006 (Rel. 89, Created) DT 28-JAN-2009 (Rel. 99, Last updated, Version 4) XX DE Arabis mosaic virus genomic RNA, segment RNA2, complete sequence, ioslated DE from narcissus. XX KW . XX OS Arabis mosaic virus OC Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; OC Picornavirales; Secoviridae; Comovirinae; Nepovirus; Nepovirus arabis. XX RN [1] RP 1-3709 RA Imura Y.; RT ; RL Submitted (24-OCT-2006) to the INSDC. RL Contact:Yoshiyuki Imura Nihon University, College of Bioresource Sciences, RL Lab. of Plant Pathology; 1866 Kameino, Fujisawa, Kanagawa 252-8510, Japan RL URL :http://hp.brs.nihon-u.ac.jp/~byouri/ XX RN [2] RX DOI; 10.1007/s11262-008-0268-3. RX PUBMED; 18696225. RA Imura Y., Oka H., Kimata K., Nasu M., Nakahama K., Maeda T.; RT "Comparisons of complete RNA-2 sequences, pathological and serological RT features among three Japanese isolates of Arabis mosaic virus"; RL Virus Genes 37(3):333-341(2008). XX DR MD5; a5b1741a029ecf56594b47584c2ba811. DR EuropePMC; PMC3314827; 22218961. XX FH Key Location/Qualifiers FH FT source 1..3709 FT /organism="Arabis mosaic virus" FT /segment="RNA2" FT /mol_type="genomic RNA" FT /country="Japan:Niigata" FT /isolation_source="naturally infected narcissus plant" FT /db_xref="taxon:12271" FT CDS 261..3515 FT /codon_start=1 FT /transl_table=1 FT /gene="RNA2" FT /product="polyprotein P2 119KDa" FT /db_xref="GOA:A0A9J7" FT /db_xref="InterPro:IPR005054" FT /db_xref="InterPro:IPR005305" FT /db_xref="InterPro:IPR005306" FT /db_xref="InterPro:IPR021081" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:A0A9J7" FT /protein_id="BAF35852.2" FT /translation="MGILYSIYRFIDGPPPERTFNLYQGNFRETQAILREAEEARQNMY FT RFLELPLEYPQGAPLVLPTEPVKAQEVVVPSVKVIPSPPPIPRPYFRPIGAFAPTQSGF FT IRATVERLTRERDESRAAALFAELPLEYPQGVPLVVPRGFVAMRWTYHATWRRWYDTSD FT ERALHIHPGGPALPPSPPPPPIQRPSSFEERLQAALQRQSCAKAFALETSLGFNMALVG FT KTTIPSTSVCCAGGRTTGGQTIAQEADPINHRVASNTAPGRAQWISERRSALRRREQAN FT SLQGLAAQTDMTFEQARNAYLGAADMIEQGLPLLPPLRNAYAPRGLWRGPSTRANYTLD FT FRLNGIPTGQNTLEILYNPVADEEMDDYRDRGMSAVVIDALEIAINPFGMPGNPTDLTV FT VATYGHERNMERAFIGSSSTFLGNGLARAIFFPGLQYSQEEPRRESLIRLYVASTNATV FT DADSILAAISVGTLRQHIGSLHNRTVASSVHAAQVQGTTLRATMMGNAVVVSPEGSLVT FT GTPEANVQIGGGSSMRMVGPLAWENVEEPGQTFTIRNRSRSMRVDRNADVGVALPRMST FT TTRGLAGRGSVQVPKDCQAGKYLKTLDLRDMISGFSGIQYEKWITAGLIMPDFKVVIRY FT PANAFTGITWVMSFDAYNRITSSISTTASPAYTLSVPHWLLHHKNGTTSCDIDYGELCG FT HALWFSATTFESPKLHFTCLTGNNKELAADWEFVVELYAEFEAAKTFLGRPNFIYSADA FT FNGSFKFLTIPPLEYDLSTTSAYKSVSLLLGQTLVDGTHKVYNYNNTLLSYYLGVGGVV FT KGKVHICSPCTYGIVLRVVSEWNGVTNNWNQLFKYPGCYIDEDGNFEIEIRSPYHRTPL FT RLLDGQAASSFTSTLNFYAISGPIAPSGETAKMPVVVQIDEIALPDLSVPTFPNDYFLW FT VDFSAFTVDTEEYVIGSRFFDISSTTSTVALGDNPFAHMIACHGLHCGVLDLKVMWDLE FT GEFGKSSGGVTITRLCGDKATGMDGASRVCALQDMSCETELYVGNYAGANPNTALSLYS FT RWLAIKLDKAKSMKMLRVLCKPRGNFEFYGRTCFKV" XX SQ Sequence 3709 BP; 892 A; 796 C; 905 G; 1116 T; 0 other; atgaaaaatt ttgtggagtt ttcatataaa cgcaatccac aaccctttca accaagagtt 60 taagaaactc aaaattgttc tttgccaatc cgttaagagc ggaaacaaag tcaaaccgtt 120 aagagcggta ccaaagcgaa gagtttaaga aactcacaac tgccttcttt ttctttctta 180 cttacgtgtt ttatttgttt agcgtttgtg tagtccgctt ctttggagga gcatattgtt 240 tcttttaatt ttctgccctt atgggcattt tatattctat ctaccggttc atcgatggtc 300 cgccacctga gcggaccttt aatctatacc aggggaactt ccgcgaaact caggctatcc 360 ttagagaggc tgaggaggcg cggcaaaaca tgtataggtt ccttgagcta ccgttggagt 420 atcctcaggg tgctcccttg gtgttgccga ccgagccggt taaagctcaa gaggtggtgg 480 tgccatctgt gaaggtcatt ccttcaccgc cccccattcc aaggccctat ttcaggccaa 540 ttggggcgtt tgcaccaacc cagtctggat ttatccgggc caccgtggaa agacttaccc 600 gggaacggga tgagtcaaga gctgcggcac tctttgccga attgcctttg gagtatcctc 660 aaggtgttcc tttggttgtc ccccgtggct ttgtggccat gaggtggact tatcatgcca 720 cctggaggcg gtggtatgac actagtgatg agcgtgccct gcatattcat cctggtggtc 780 ctgctttgcc tccatccccc cccccccccc caatccaaag accatcctct tttgaggaga 840 ggttgcaggc tgcccttcaa aggcagtcct gtgccaaggc ttttgccctg gaaacttcgc 900 tgggctttaa tatggccttg gtgggaaaga ctactatccc cagcacttct gtgtgctgtg 960 ctggtggtag gactactggt gggcaaacca ttgcccaaga agctgatcct attaatcata 1020 gggtcgcttc caacacagcc cccggtaggg cacaatggat ctcagagcgt cgtagtgctc 1080 tgagacgaag agaacaggct aatagcctgc agggtcttgc tgctcaaact gatatgacat 1140 ttgagcaggc caggaatgcg tatcttggcg ctgctgatat gatagagcaa ggcctaccgt 1200 tactgcctcc attgagaaat gcttatgcac ctcgtggtct gtggagggga ccttctacca 1260 gagccaatta cactttggat ttcaggctca atggaattcc cacaggacaa aatactttag 1320 aaatattgta caatcctgtg gcggatgagg aaatggatga ctaccgtgat aggggtatgt 1380 cagcagtcgt gattgatgca ctggaaattg ctatcaatcc ttttgggatg ccaggcaatc 1440 cgactgatct tactgtcgtg gcaacgtatg ggcatgaacg caacatggag cgtgccttta 1500 ttggttcctc gtcaaccttc cttgggaatg gtttggccag ggctatcttc tttcctggtt 1560 tacaatatag ccaggaggaa cctaggcgcg aatctcttat tcgcctgtat gttgcttcta 1620 ccaacgccac tgttgatgct gattctatct tggcagccat tagtgtgggc actttgcgcc 1680 aacacattgg ttcgctacac aatagaacag tggcgagttc tgtgcatgct gctcaagtgc 1740 aaggcaccac tttgagagct accatgatgg gtaatgctgt tgtggtttct cctgaaggaa 1800 gtcttgttac cggaaccccc gaggctaatg ttcaaattgg aggtggttcc agcatgcgaa 1860 tggttggtcc tctggcatgg gaaaatgttg aagaaccagg ccagaccttt actataagaa 1920 accgctcccg gtctatgcga gtagatcgga atgctgatgt tggagttgct cttcctagaa 1980 tgagtactac aacgcgggga cttgctggaa gaggttctgt tcaggtgcct aaagattgcc 2040 aggcgggaaa gtacctgaaa acccttgact tgagagacat gattagcggg ttttcaggta 2100 ttcagtatga aaagtggatc actgctggac ttataatgcc agattttaaa gtggtgattc 2160 gctatccagc caatgccttt acaggcatta cgtgggttat gagctttgat gcctataatc 2220 gaataactag tagtatttct actactgcta gtcctgcgta caccctgtca gttcctcatt 2280 ggctgttgca tcacaaaaat ggaacaacct catgtgatat tgattatggg gagctctgtg 2340 gccatgcttt gtggtttagt gccactactt tcgagagccc caaacttcat ttcacatgcc 2400 tcactggaaa taacaaagaa cttgctgcag attgggagtt tgtagttgag ttatatgctg 2460 agtttgaggc agcaaaaact tttcttggga gacccaattt catttatagc gctgatgctt 2520 ttaatgggtc tttcaagttt ctgactatcc caccactgga atatgacctg agtactacca 2580 gtgcctacaa aagtgtgtcc cttcttttgg gccaaactct tgttgatggg actcataaag 2640 tgtataatta taataataca cttttgagtt actatcttgg tgttggtggt gtggtcaagg 2700 gcaaagtgca tatatgtagc ccttgtactt atggcatagt cctaagagtt gttagtgaat 2760 ggaatggggt cactaacaac tggaatcaac tgtttaaata ccccgggtgt tatatcgatg 2820 aggatgggaa ttttgaaatt gaaattcgtt ccccatatca tcgaactcca ctgcgcttac 2880 tggatggaca ggcagcgagc tctttcacga gcacgctgaa tttctatgca atttcggggc 2940 caattgcccc gagtggagaa actgctaaga tgccagtggt agtgcaaatt gacgaaattg 3000 cattaccaga tctttccgtc ccgactttcc ctaatgatta ttttctttgg gtggactttt 3060 ctgctttcac tgttgataca gaagagtatg taatagggtc gaggtttttt gatatttcct 3120 ctaccactag tactgtcgcc ctgggagata atccttttgc ccacatgata gcttgtcatg 3180 ggctccattg cggagttctt gatcttaagg taatgtggga tttggaaggc gagtttggaa 3240 agagctctgg tggtgttact atcacacgtt tgtgtggtga taaggccact ggcatggacg 3300 gagcttctcg tgtctgtgct ttacaagaca tgagttgtga aactgaactg tatgttggga 3360 attatgccgg tgctaatcct aatacagcac tatccctgta cagtcgttgg cttgctatta 3420 agctagacaa agctaagagt atgaaaatgc tcagagtgtt gtgcaagcca agaggaaact 3480 ttgaattcta tggaagaaca tgctttaagg tttagtttcc ttaaatagtc ttgggaatct 3540 gactataaaa gacccacctg tattatattt atatttagtt tgtttactgc ttttgtgtgt 3600 ttaatttcat gcttttagtg gcgacagtgt gttgtttgtc ctttggacac acttgccttg 3660 ttggacgcaa aaagattttt attttctttt tactgctttt gtaaatttt 3709 //