ID AB279739; SV 2; linear; genomic RNA; STD; VRL; 3789 BP. XX AC AB279739; XX DT 26-OCT-2006 (Rel. 89, Created) DT 28-JAN-2009 (Rel. 99, Last updated, Version 4) XX DE Arabis mosaic virus genomic RNA, segment RNA2, complete sequence, isolated DE from butterbur. XX KW . XX OS Arabis mosaic virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus. XX RN [1] RP 1-3789 RA Imura Y.; RT ; RL Submitted (24-OCT-2006) to the INSDC. RL Contact:Yoshiyuki Imura Nihon University, College of Bioresource Sciences, RL Lab. of Plant Pathology; 1866 Kameino, Fujisawa, Kanagawa 252-8510, Japan RL URL :http://hp.brs.nihon-u.ac.jp/~byouri/ XX RN [2] RX DOI; 10.1007/s11262-008-0268-3. RX PUBMED; 18696225. RA Imura Y., Oka H., Kimata K., Nasu M., Nakahama K., Maeda T.; RT "Comparisons of complete RNA-2 sequences, pathological and serological RT features among three Japanese isolates of Arabis mosaic virus"; RL Virus Genes 37(3):333-341(2008). XX DR MD5; 4efa2055a648f8c836805f40af72fbf4. DR EuropePMC; PMC3314827; 22218961. XX FH Key Location/Qualifiers FH FT source 1..3789 FT /organism="Arabis mosaic virus" FT /segment="RNA2" FT /mol_type="genomic RNA" FT /country="Japan:Hiroshima" FT /isolation_source="naturally infected butterbur plant" FT /db_xref="taxon:12271" FT CDS 254..3622 FT /codon_start=1 FT /transl_table=1 FT /gene="RNA2" FT /product="polyprotein P2 123KDa" FT /db_xref="GOA:A0A9J6" FT /db_xref="InterPro:IPR005054" FT /db_xref="InterPro:IPR005305" FT /db_xref="InterPro:IPR005306" FT /db_xref="InterPro:IPR021081" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:A0A9J6" FT /protein_id="BAF35851.2" FT /translation="MVKFYYSNRRLVCWAVSKNLHLGGSVEQWLQCVEDSAFRAEVKSD FT VVANRDHPTAIRTFSYKVGYGPIDDPRYADWGYVLTGVATPGLRGGVVPPPTEPVKAHE FT VVEVPQPRVEIPSPPPVPTYTLYRSVGAFAPTRSGFIRAIVERLRRKRAESTAAALFAE FT LPLEYPQGAPLKLTVIQKMGMVRYQSWKLWYDTSDARISGHYKGVSPFPPPPPPPKPLT FT FREKLAAACSRQVSGRIFSFQTSLGLNMAQTCRVAIPSISICCASSRGTDGRTTGGQTV FT AQEADPLYHRVASNTAPARQAWISERRQAIRRREQANSLQSLAAQTDQPVTFEQARNAY FT LGAAEMIDQGLPLLPPLRNAYAPRGLWRGPSTRANYTLDFRLSGIPTGENTLEILYNPV FT ADEEMDEYRDRGMSAVVIDALEIAINPFGMPGNPTDLTVVATYGHERNVERAFIGSAST FT FLGNGLSRAIFFPGLQYSQEEPRRESIIRLYVASTNATVDADSVLAAISVGTLRQHIGS FT LHNRTVANSVHNAQVRGTTLRAAMMGNTIVVSPEGGLVTGAPNANVTIGGSSSVRMVGP FT LAWENVQEPGRQFTIQSRSRSVRVDRNADLPEAQPRTSTTTRGLAGRGSVQVPKDCKAG FT AFLKTLNLRDMISGFSGIQYEKWIAAGLVMPDFKVVIRYPANAFTGLTWVMSFDAYNRI FT TSSITTTASPTYTLSVPHWLLHHKNGTTTCEVDYGKLCGHAMWFSTTTFETPKLHFTCL FT TGNNKALAADWEFVVELYAEFEAADSFLGKPNFVHRNGAFEGSFEYFTLPPLNYALNTI FT AAYKSIPLNLGQTLSDGTSKVYNFNNTLLSYYLGLGGKLRGRVLFCSPIFYGVVLRIVS FT EWNGVTNNWNQLFKYPGVNLEQEGPFEIEIRSPFHRTPMRLQGTQTASSMSSINMYAVS FT GPIAPGGETADMAVVVQIDEIALPDLSAPAFPNDFFLWVDFSAFTIDQEEFVVGSRFFD FT FTSTTCTVALGTNPFAHMIACHGLHRGVLELKLEWSLVEEFGKSTGSVILTHLVGDKAT FT GLDGGSRVCAIQDMGCLTELFVGNFAGPNPNTALDAYSRWLAIKLDKARSMKILRVLCR FT PKGDFEFYGRTCFKV" XX SQ Sequence 3789 BP; 915 A; 837 C; 955 G; 1082 T; 0 other; atgttaaaaa atttatagga atcatattaa ggcgatcccc ttaatacctg ttactgtgac 60 ttgttttccg acgaagcgtt taagaaacgc accaaaacga agagtttaag aaactcatta 120 gtgtccaagg cgaagagttt aagaaactca ttttcatata ccgcatttca attttacgtt 180 ctatttattt aagtacttta aaattgcgtt tattttgatt ttgttttgtt tccttttcgt 240 tttcttgacc tttatggtca aattttatta ctccaacagg cgtctggtct gttgggccgt 300 ttctaagaac ctccatctgg gaggttctgt agaacaatgg ctccagtgtg tggaggactc 360 tgcctttagg gcagaggtta aatctgatgt ggttgctaac cgtgaccacc caacggctat 420 ccgcaccttc tcatacaagg tggggtatgg cccaattgac gaccccagat atgctgactg 480 gggttacgtt ttgactgggg ttgccacccc aggacttagg ggaggagttg ttcccccacc 540 gaccgagccg gttaaagctc atgaggttgt ggaggtgcca caaccgaggg tggagattcc 600 atcgccacct cctgttccca cttacactct ttacaggagt gtgggtgctt tcgcacctac 660 aaggtccgga tttatccggg ccattgtgga aagactccgc cggaaaaggg cggagtcaac 720 agctgcggca ctgtttgccg aacttccttt ggagtatccg caaggtgctc cattaaagct 780 gaccgtcatc cagaaaatgg ggatggtccg ctaccagagc tggaagctct ggtatgatac 840 ttctgatgcc cggatttctg ggcattacaa gggagtgtct ccttttcccc cccctccccc 900 accaccgaaa cccctgactt tcagggaaaa gcttgctgca gcttgcagca ggcaggtgtc 960 ggggaggatt ttctccttcc agacctccct gggccttaat atggcccaga cgtgtagagt 1020 tgctattcct agcatctcta tatgctgtgc ctcttctagg ggcacggatg gtcgtactac 1080 tggcgggcaa actgttgccc aagaagcgga cccactctac catagagtgg cgtctaatac 1140 cgcgcccgcc aggcaggcat ggatctccga acgccgtcag gctattagga gacgtgagca 1200 agccaacagc ttgcagagcc ttgctgctca gactgatcaa ccggtcacgt ttgagcaggc 1260 acgaaatgca tatctcggag ctgccgagat gattgatcaa ggcttgccgt tgttgccccc 1320 tttgcgtaat gcgtatgcgc ctaggggttt gtggaggggt ccctcgacaa gagccaatta 1380 tactcttgat tttcggctca gtgggatacc caccggtgag aataccctcg aaattctcta 1440 taatccggtc gcagacgagg aaatggacga ataccgtgac aggggtatgt ccgctgtggt 1500 gattgacgcc ttggagatag caataaatcc ttttggaatg ccaggcaatc ccacagatct 1560 tactgtcgta gcgacgtacg ggcatgagcg aaatgtggaa cgcgctttta taggctctgc 1620 ttcaaccttt cttggaaatg ggttgtcgcg agccatcttc ttccccggct tgcaatatag 1680 tcaggaagaa ccaaggcgcg aatctatcat tcgcctgtat gtcgcttcta ctaatgccac 1740 tgttgatgct gattctgtgt tagcagctat tagtgtgggg actttgcgtc aacacattgg 1800 ttcgcttcat aatagaacag tggcaaattc tgttcataat gcgcaagtgc gtggcacaac 1860 tctcagagcg gccatgatgg gtaacaccat tgttgtttct ccagaggggg gtcttgtcac 1920 cggagctcct aatgctaatg tcacaatagg agggagttcc agtgtgcgca tggtcggtcc 1980 gcttgcatgg gaaaatgtgc aggaacctgg gaggcagttc accatccaga gcagatctag 2040 gtctgttagg gtggatcgaa atgctgatct ccccgaagcc caacctcgaa caagcacaac 2100 aactagaggt ttggctggga gggggtctgt ccaggtccca aaagattgca aggcgggagc 2160 attcctgaaa actctgaacc tcagagatat gattagtggg ttttcaggaa tccagtatga 2220 gaagtggata gcagctggct tggttatgcc agattttaag gttgtaatac gctatccggc 2280 caatgcattc acggggttaa cgtgggttat gagttttgat gcttacaacc gaattactag 2340 tagtattaca actactgcta gtcccacgta taccctttca gtccctcatt ggcttttgca 2400 ccataaaaat gggactacta catgtgaggt ggactatggg aagttgtgtg gtcacgcaat 2460 gtggttctca acaaccacat ttgaaactcc aaaacttcat ttcacatgtt taactggaaa 2520 taacaaagca ctcgcagcgg attgggagtt cgttgtagag ttatatgcgg aatttgaggc 2580 cgctgacagt tttcttggga aacccaattt tgtgcacaga aatggtgcat ttgagggttc 2640 ctttgaatat tttactctcc caccccttaa ttacgcgcta aacaccatag ctgcgtataa 2700 aagtataccc ctaaacttgg ggcaaacctt gtctgatggc actagcaaag tgtataactt 2760 taataatact ttgcttagct attacttagg tttgggggga aaacttaggg gaagggtgct 2820 tttctgtagc cccattttct atggtgttgt tctccgtatt gtgagcgagt ggaatggagt 2880 aaccaacaat tggaatcagc tcttcaagta tccaggtgtg aacttggaac aagaagggcc 2940 attcgaaatt gaaataaggt ctcctttcca ccgtactccc atgcgactgc aaggcacaca 3000 aacagcgagt tccatgagct cgattaatat gtatgcagtg tccgggccaa ttgcgcctgg 3060 aggagaaacg gctgacatgg cagtagtagt gcaaattgat gaaatagcac tgccagatct 3120 ctcagccccg gcttttccta atgatttttt cctgtgggtg gatttttctg ccttcactat 3180 agatcaggag gaatttgttg tgggttccag attctttgac tttacttcca ccacatgcac 3240 agtggcatta gggactaatc cttttgccca catgatagca tgccatggtt tacaccgcgg 3300 cgtgctagag ttgaaattgg agtggagttt ggttgaggag tttgggaaga gtactggtag 3360 tgttattctt acccacctcg tgggagataa agctactggc cttgatggcg gatcccgtgt 3420 ttgtgctata caagacatgg gttgtttgac tgagctgttt gttggtaact ttgcgggacc 3480 caatccaaac acagctcttg atgcgtatag ccgttggctg gcgataaagc tagacaaagc 3540 tcggagtatg aaaatactaa gagtcttgtg tcgacccaaa ggggattttg aattttatgg 3600 aagaacttgt ttcaaagtat aatccccttg gtttgttgta acttagtgta aatagagtgt 3660 ttactgcttt tgtgtgtttt atttcatgca tttagtggcg acagctagtt gtttgtcctt 3720 tggactagct tgctatgttg gacacaaaaa gattttcttt atttcttttt agtctctttt 3780 gcattttgt 3789 //