ID AB277788; SV 1; linear; genomic RNA; STD; VRL; 2876 BP. XX AC AB277788; XX DT 13-OCT-2006 (Rel. 89, Created) DT 13-OCT-2006 (Rel. 89, Last updated, Version 1) XX DE Rupestris stem pitting-associated virus genes for RNA-dependent RNA DE polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, DE 8.4 kDa hypothetical protein, coat protein, partial and complete cds, DE strain: Ham1. XX KW . XX OS Grapevine rupestris stem pitting-associated virus OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Quinvirinae; Foveavirus. XX RN [1] RP 1-2876 RA Nakaune R.; RT ; RL Submitted (11-OCT-2006) to the INSDC. RL Ryoji Nakaune, National Institute of Fruit Tree Science, Grape and RL Persimmon Research Station; Akitsu 301-2, Higashihiroshima, Hiroshima RL 729-2494, Japan (E-mail:une@affrc.go.jp, Tel:81846454756, Fax:81846455370) XX RN [2] RA Nakaune R., Nakano M.; RT "Rupestris stem pitting-associated virus related to rugose wood disease in RT Japanese grapevines"; RL Unpublished. XX DR MD5; 47e2b833a303ec24c61ae37ea1dc25fd. XX FH Key Location/Qualifiers FH FT source 1..2876 FT /organism="Grapevine rupestris stem pitting-associated FT virus" FT /strain="Ham1" FT /mol_type="genomic RNA" FT /country="Japan:Hiroshima" FT /isolation_source="Vitis labruscana cv. Kyoho" FT /db_xref="taxon:196400" FT CDS <1..802 FT /codon_start=2 FT /transl_table=1 FT /product="RNA-dependent RNA polymerase" FT /db_xref="GOA:Q05JC7" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q05JC7" FT /protein_id="BAF34874.1" FT /translation="QHAVLVRFAPYMRYIEKKLMQALKPNFYIHSGKGLDELNEWVRAR FT GFTGVCTESDYEAFDASQDHFILAFELQVMRFLGLPEDLILDYEFIKIHLGSKLGSFAI FT MRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAGDDMCANRRLRLKTEHAGFLNMI FT CLKAKVQFVTNPTFCGWCLFKEGIFKKPQLIWERICIAREMGNLDNCIDNYAIEVSYAY FT RLGELSIGVMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEVIV" FT CDS 833..1498 FT /codon_start=1 FT /transl_table=1 FT /product="24.4 kDa hypothetical protein" FT /db_xref="GOA:Q05JC6" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:Q05JC6" FT /protein_id="BAF34875.1" FT /translation="MNNLVKALSAFEFVGVFCVLKFPVVVHSVPGSGKSSLIRELISED FT EAFVAFTAGVPDSPNLTGRYIKPYAPGCAVQGKINILDEYLSVSDTSGFDVLFSDPYQN FT VSIPREAHFIKTKTCRFGTNTCKYLQSFGFNVCSDGVDKVVVGSPFELEVEGVLICFGK FT EAVDLAVAHNSDFKLPCEVRGSTFDVVTLLKSRDPTPEDKHWFYVAATRHRSKLIIMQ" FT CDS 1500..1853 FT /codon_start=1 FT /transl_table=1 FT /product="12.8 kDa hypothetical protein" FT /db_xref="GOA:Q05JC5" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q05JC5" FT /protein_id="BAF34876.1" FT /translation="MPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFP FT HGGHYRDGTKSITYCGPRQSFPSSGIFGQSENFVPLILVVTLVAFIHALSLWNSGPSRS FT CNCHPNPCTCRQQ" FT CDS 1774..2016 FT /codon_start=1 FT /transl_table=1 FT /product="8.4 kDa hypothetical protein" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:Q05JC4" FT /protein_id="BAF34877.1" FT /translation="MHYLFGILVLVGVAIAIQILAHVDSSSGNHQGCFIRATGESILIE FT NCGPSEALAATVKEVLGGLKALGVSQKVDKIDYSC" FT CDS 2026..2805 FT /codon_start=1 FT /transl_table=1 FT /product="coat protein" FT /db_xref="GOA:Q05JC3" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:Q05JC3" FT /protein_id="BAF34878.1" FT /translation="MASQVGKLPGESNEAYEARLKALELARTQKAPEVSNQPPTLGGIL FT AKRKRVIENALSKTVDMREVLRHESVVLSPNVMDEGAIDELIRAFGESGIAENVQFDVA FT IDIARHCSDVGSSQRSTLIGKSPFCELNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLE FT TGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEPKGGVKRAPTKAEMVANIASFEVK FT VLRQTMAEGKRSSNLGEISGGTAGALINNPFANVTHE" XX SQ Sequence 2876 BP; 804 A; 547 C; 715 G; 810 T; 0 other; tcaacacgcc gttttggttc gctttgcacc ctacatgcga tacattgaaa agaagcttat 60 gcaggcattg aaaccaaatt tctacattca ttctggcaaa ggtcttgatg agctaaatga 120 atgggttaga gctagaggtt tcacaggtgt gtgtacagag tcagactatg aagcttttga 180 tgcatcccaa gatcatttca tcctggcatt tgaactgcaa gtcatgagat ttttaggact 240 gccagaagat ctgatcttag attatgagtt catcaaaatt catcttgggt caaagcttgg 300 ctcttttgca attatgagat tcacaggtga ggcaagtacc ttcctattca acactatggc 360 caacatgcta ttcactttcc tgaggtatga gttaacaggt tctgaatcaa ttgcatttgc 420 tggagatgat atgtgtgcta atcgaaggtt aagactcaag actgagcatg ctggttttct 480 aaacatgatc tgtctcaaag ctaaggtgca gtttgttaca aatcctacct tctgtggatg 540 gtgtttgttt aaagagggaa tctttaaaaa accccagctc atttgggaaa ggatctgcat 600 tgctagggaa atgggtaact tggacaattg cattgacaat tacgcaattg aggtgtctta 660 tgcttacaga cttggggaat tatctatagg cgtgatgact gaggaggaag ttgaagcgca 720 ttataactgc gtgcgtttcc tggttcgcaa taagcacaag atgaggtgct caatttctgg 780 tttgtttgaa gttatcgttt aggccttaag tgtttggcat ggtgtgagta ttatgaataa 840 cttagtcaaa gctttgtctg cgtttgaatt tgttggcgtg ttttgtgtac ttaaatttcc 900 agttgttgtt cacagtgttc caggtagtgg taaaagtagc ctaataaggg agctcatttc 960 tgaagacgag gcttttgtgg ccttcacagc aggtgtgcca gacagtccaa atctaacagg 1020 aaggtacatc aagccctacg ctccagggtg tgcagtgcaa gggaaaataa acatacttga 1080 tgagtacttg tctgtctctg atacttctgg ctttgatgtg ctgttctcag acccttacca 1140 gaatgtcagc attccaagag aggcacactt cataaaaacc aaaacctgta ggtttggtac 1200 caacacctgc aagtaccttc aatcttttgg ctttaatgtt tgtagtgatg gggtggataa 1260 agttgttgta gggtcgccat ttgaactgga ggttgagggg gttctcattt gctttggaaa 1320 ggaggccgta gatctagcag ttgcacacaa ttctgacttc aagttgccct gcgaagtgcg 1380 gggttcaaca tttgacgtag tgacgttatt gaagtccagg gatccaactc cagaagataa 1440 gcattggttc tacgttgcag ccacaaggca tcgaagtaaa ttgataataa tgcagtaaaa 1500 tgccttttca gcaacctgcc aactgggcta agaccataac tccattaact attggtttgg 1560 gcattgggtt ggttctgcac ttcttaagga aatcaaatct accatattca ggagataata 1620 ttcaccagtt cccacacgga gggcattaca gggacggcac gaagagcata acctattgtg 1680 gccctaggca gtcattccca agctcaggaa tattcggtca gtctgaaaat ttcgtacctc 1740 taatattggt cgtgactctg gtcgctttta tacatgcatt atctctttgg aattctggtc 1800 ctagtaggag ttgcaattgc catccaaatc cttgcacatg tagacagcag tagtggcaac 1860 catcaaggct gtttcataag agccaccggg gaatcaatac taattgagaa ttgtgggccg 1920 agcgaggccc tagctgctac agtcaaagag gtgttgggcg gtctaaaggc tttaggggtt 1980 agccaaaagg ttgataaaat tgattacagt tgttgagaca gttgaatggc gagtcaagtt 2040 ggaaaattgc ctggcgaatc aaatgaagca tatgaggcta gacttaaggc cttagagtta 2100 gcaaggaccc aaaaagctcc agaagtctcc aaccaacctc ccacacttgg aggcattcta 2160 gccaaaagga aaagagtgat tgagaatgca ctctcaaaga cagtggatat gcgtgaagtc 2220 ttaaggcatg aatctgttgt gctctcccca aatgtaatgg acgagggagc aatagatgag 2280 ctgattcgtg cctttgggga gtcgggcata gctgaaaatg tgcagtttga tgttgcaata 2340 gacattgctc gccactgttc tgatgtgggg agctctcaga ggtcaaccct tattggtaaa 2400 agccccttct gtgagttaaa taggtctgaa attgccggaa taataaggga ggtgaccacg 2460 ctgcgcagat tttgcatgta ctacgcaaag attgtgtgga acatccattt ggagacggga 2520 ataccaccag ctaattgggc caagaaagga tttaatgaga atgaaaagtt tgcagccttt 2580 gacttcttcc ttggagtcac agatgaaagc gcgcttgaac ctaagggtgg agtcaagaga 2640 gctccaacaa aagcagagat ggtcgctaat attgcctctt ttgaagttaa agtgctcaga 2700 cagactatgg ctgaaggaaa gcggagctcc aatcttggag aaattagtgg tggaacggct 2760 ggggcgctta tcaacaaccc ctttgcaaat gttacgcatg aatgaggttg atagtggaag 2820 cagcgctcca ttatccaaat aatcacccga tttcaaggct gggttaagcc tgttcg 2876 //