ID AB277787; SV 1; linear; genomic RNA; STD; VRL; 2876 BP. XX AC AB277787; XX DT 13-OCT-2006 (Rel. 89, Created) DT 13-OCT-2006 (Rel. 89, Last updated, Version 1) XX DE Rupestris stem pitting-associated virus genes for RNA-dependent RNA DE polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, DE 8.4 kDa hypothetical protein, coat protein, partial and complete cds, DE strain: Hai1. XX KW . XX OS Grapevine rupestris stem pitting-associated virus OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Quinvirinae; Foveavirus. XX RN [1] RP 1-2876 RA Nakaune R.; RT ; RL Submitted (11-OCT-2006) to the INSDC. RL Ryoji Nakaune, National Institute of Fruit Tree Science, Grape and RL Persimmon Research Station; Akitsu 301-2, Higashihiroshima, Hiroshima RL 729-2494, Japan (E-mail:une@affrc.go.jp, Tel:81846454756, Fax:81846455370) XX RN [2] RA Nakaune R., Nakano M.; RT "Rupestris stem pitting-associated virus related to rugose wood disease in RT Japanese grapevines"; RL Unpublished. XX DR MD5; bf6b1786fb42d50779e831a36f1c458a. XX FH Key Location/Qualifiers FH FT source 1..2876 FT /organism="Grapevine rupestris stem pitting-associated FT virus" FT /strain="Hai1" FT /mol_type="genomic RNA" FT /country="Japan:Okayama" FT /isolation_source="Vitis labruscana cv. Kyoho" FT /db_xref="taxon:196400" FT CDS <1..802 FT /codon_start=2 FT /transl_table=1 FT /product="RNA-dependent RNA polymerase" FT /db_xref="GOA:Q05JD2" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q05JD2" FT /protein_id="BAF34869.1" FT /translation="QHAVLVRFAPYMRYIEKKLMQALKPNFYIHSGKGLDELNEWVRAR FT DFTGVCTESDYEAFDASQDHFILAFELQIMRFLGLPEDLILDYEFIKIHLGSKLGSFAI FT MRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAGDDMCANRRLRLKIEHAGFLNMI FT CLKAKVQFVTNPTFCGWCLFKEGIFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAY FT RLGELSIGVMTEEEIEAHYNCVRFLVRNKHKMRCSISSLFEVIV" FT CDS 833..1498 FT /codon_start=1 FT /transl_table=1 FT /product="24.4 kDa hypothetical protein" FT /db_xref="GOA:Q05JD1" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:Q05JD1" FT /protein_id="BAF34870.1" FT /translation="MNNLVKALSAFEFVGVFCVLKFPVVVHSVPGSGKSSLIRELISED FT ESFVAFTAGVPDSPNLTGRYIKPYSPGCAVQGKINILDEYLSVSDISGFDVLFSDPYQN FT ISIPREAHFIKTKTCRFGAKTCKYLQSFGFDVYSDRVDAVVIGSPFELDVEGVLICFGK FT EAVDLAVAHNSDFKLPCEVRGSTFDVVTLLKSRDPTPEDKHWFYVAATRHRSKLIIMQ" FT CDS 1500..1853 FT /codon_start=1 FT /transl_table=1 FT /product="12.8 kDa hypothetical protein" FT /db_xref="GOA:Q05JD0" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q05JD0" FT /protein_id="BAF34871.1" FT /translation="MPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFP FT HGGHYKDGTKSITYCGPRQSFPSSGIFGQSENFVPLILVVALVAFIHVLSLWNSGPSRS FT CNCHPNPCTCRQQ" FT CDS 1774..2016 FT /codon_start=1 FT /transl_table=1 FT /product="8.4 kDa hypothetical protein" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:Q05JC9" FT /protein_id="BAF34872.1" FT /translation="MYCLFGILVLVGVAIAIQILAHVDSSSGSHRGCFIRATGESILIE FT NCGPSEALAATVKEVLGGLKALGVSQKVDEIDHSC" FT CDS 2026..2805 FT /codon_start=1 FT /transl_table=1 FT /product="coat protein" FT /db_xref="GOA:Q05JC8" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:Q05JC8" FT /protein_id="BAF34873.1" FT /translation="MASQVGKLPGESNEAYEARLKALELARAQKAPEVSNQPPALSGIL FT AKRKRVIENALSKTVDMREVLRHESVVLSPNVMDEGAIDELIRAFGESGIAENAQFDVA FT IDIARHCSDVGSSQRSTLIGISPFCELNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLE FT TGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEPKGGVKRAPTKAEMVANIASFEVK FT VLRQTMAEGKRSSNLGEISGGTAGALINNPFANVTHE" XX SQ Sequence 2876 BP; 795 A; 528 C; 718 G; 835 T; 0 other; tcagcacgct gttttggttc gctttgcacc ttacatgcga tacattgaaa agaagctcat 60 gcaagcattg aaacccaact tctacattca ctcaggcaaa ggtcttgatg agctaaatga 120 atgggttagg gcaagagatt tcacaggtgt atgcacagag tcagactatg aagcttttga 180 tgcatcccag gaccatttca tcttggcatt tgaactgcaa atcatgagat ttttaggatt 240 gccagaagat ctaattttag actatgagtt catcaaaatc catcttggtt caaagcttgg 300 ctctttcgcg ataatgagat ttacaggtga ggcaagcacc tttctattta atactatggc 360 taacatgttg ttcactttcc tgagatatga gttaacaggt tctgaatcaa ttgcatttgc 420 aggagatgac atgtgtgcca atcgcaggct aaggcttaaa attgagcatg ccggttttct 480 gaacatgatt tgtcttaaag ctaaggtgca gtttgtcaca aatcccactt tctgcggatg 540 gtgtctgttt aaagagggaa tctttaaaaa gcctcagctt atttgggaga ggatctgcat 600 tgctagagaa atgggcaatt tggaaaattg cattgataat tatgcaattg aggtgtctta 660 tgcttacaga cttggagaat tgtctattgg tgtgatgact gaggaggaaa ttgaagcgca 720 ttataactgt gtgcgtttcc tggttcgaaa taagcataaa atgaggtgtt caatttctag 780 tttgtttgaa gttatagttt aggccttaag tgtttggcgt ggtgtgagta ttatgaataa 840 cttagtcaag gctttgtctg catttgaatt tgttggcgtg ttctgtgtac ttaaatttcc 900 agttgttgtt catagtgttc caggtagtgg taaaagtagc ctaataaggg agcttatttc 960 tgaggacgaa tcttttgtgg cttttacagc gggtgtgcca gacagtccaa atctaacagg 1020 aaggtacatc aagccctact ctccagggtg tgcagtgcaa gggaagataa atatacttga 1080 tgagtacttg tctgtctctg atatttctgg ttttgatgtg ctgttctcag acccctacca 1140 gaacatcagc attccaaggg aggcacactt cataaagacc aaaacttgca ggtttggtgc 1200 taaaacctgc aagtacctcc aatcttttgg ttttgatgtt tatagtgata gagtggacgc 1260 agttgttata gggtcgccat ttgaactgga tgttgaggga gtcctcattt gctttggaaa 1320 ggaggccgta gacctagcag ttgcgcacaa ttccgacttc aagttgccct gcgaggtgcg 1380 gggttcaaca tttgacgttg taacattatt gaagtctagg gacccaactc cagaagataa 1440 gcattggttc tacgtcgcag caacaaggca tcgaagcaaa ctgataataa tgcagtgaga 1500 tgcctttcca gcaacctgcc aactgggcta agactataac tccattaact atcggcttgg 1560 gcatcggatt ggttctacac tttttgagaa agtctaattt gccatattca ggtgacaata 1620 ttcaccagtt tccacacgga gggcattata aggacggcac aaagagcata acctattgtg 1680 gtcctaggca gtcattccca agttcaggga tatttggtca gtcagaaaat ttcgtacctt 1740 tgatactggt tgtagctctg gtcgctttta tacatgtatt gtctctttgg aattctggtc 1800 ctagtaggag ttgcaattgc catccaaatc cttgcacatg tagacagcag tagtggtagc 1860 catcgaggct gtttcataag ggccaccggg gagtcaatac tgattgagaa ttgtgggcca 1920 agcgaggccc tagctgctac agttaaagag gtgttgggcg gtctgaaggc tttaggggtt 1980 agccaaaaag ttgatgaaat tgatcacagt tgttgaaaga gttaaatggc gagtcaagtt 2040 ggaaagttgc ctggcgagtc aaatgaagca tatgaagcca gacttaaggc tttagagtta 2100 gcaagggctc aaaaggctcc ggaagtttcc aaccaacctc ccgcacttag tggcattctt 2160 gccaaaagga aaagagtgat tgagaatgca ctctcgaaaa cagtggatat gcgtgaagtt 2220 ttaaggcatg aatctgttgt actttcccca aatgtgatgg atgagggagc aatagatgag 2280 ctaattcgtg cctttgggga gtcaggcata gctgaaaatg cgcagttcga tgttgcaata 2340 gacattgccc gccactgttc tgatgtggga agttctcaga ggtcaaccct aattggtata 2400 agccccttct gcgagttaaa tcggtctgaa attgctggaa ttataaggga ggtaaccaca 2460 ctgcgcagat tttgcatgta ctacgcaaaa atcgtgtgga acattcattt ggagacggga 2520 ataccaccag ctaattgggc caagaaagga tttaatgaga atgaaaagtt tgcagccttt 2580 gacttcttcc ttggagtcac agatgagagc gcgcttgaac ctaagggtgg tgtcaagaga 2640 gctccaacaa aggcagagat ggttgctaat attgcctctt ttgaagtcaa agtgctcaga 2700 cagactatgg ctgaaggaaa gcggagctcc aatcttggag aaattagtgg tggaacggct 2760 ggggcgctta ttaataaccc ctttgcaaat gttacgcatg aatgaggttg atagtggaag 2820 caatgctcct tcatctgaat aatcacccga tttcaaggct gggttaagcc tgttcg 2876 //