ID AB277786; SV 1; linear; genomic RNA; STD; VRL; 2876 BP. XX AC AB277786; XX DT 13-OCT-2006 (Rel. 89, Created) DT 13-OCT-2006 (Rel. 89, Last updated, Version 1) XX DE Rupestris stem pitting-associated virus genes for RNA-dependent RNA DE polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, DE 8.4 kDa hypothetical protein, coat protein, partial and complete cds, DE strain: Hiz6. XX KW . XX OS Grapevine rupestris stem pitting-associated virus OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Quinvirinae; Foveavirus. XX RN [1] RP 1-2876 RA Nakaune R.; RT ; RL Submitted (11-OCT-2006) to the INSDC. RL Ryoji Nakaune, National Institute of Fruit Tree Science, Grape and RL Persimmon Research Station; Akitsu 301-2, Higashihiroshima, Hiroshima RL 729-2494, Japan (E-mail:une@affrc.go.jp, Tel:81846454756, Fax:81846455370) XX RN [2] RA Nakaune R., Nakano M.; RT "Rupestris stem pitting-associated virus related to rugose wood disease in RT Japanese grapevines"; RL Unpublished. XX DR MD5; 255769da0cda775e286f0363e6dcb8b8. XX FH Key Location/Qualifiers FH FT source 1..2876 FT /organism="Grapevine rupestris stem pitting-associated FT virus" FT /strain="Hiz6" FT /mol_type="genomic RNA" FT /country="Japan:Hiroshima" FT /isolation_source="Vitis labruscana cv. Pione" FT /db_xref="taxon:196400" FT CDS <1..802 FT /codon_start=2 FT /transl_table=1 FT /product="RNA-dependent RNA polymerase" FT /db_xref="GOA:Q05JD7" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q05JD7" FT /protein_id="BAF34864.1" FT /translation="QHAVLVRFAPYMRYIEKKLVQALKPNFYIHSGKGLDELNEWVKAR FT GFTGICTESDYEAFDASQDHFILAFELQIMKFLGLPEDLILDYEFIKIHLGSKLGSFSI FT MRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAGDDMCANRRLRLKTEHEGFLNMI FT CLKAKVQFVSNPTFCGWCLFKEGIFKKPQLIWERICIAREMGNLDNCIDNYAIEVSYAY FT RLGELSIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAVD" FT CDS 833..1498 FT /codon_start=1 FT /transl_table=1 FT /product="24.4 kDa hypothetical protein" FT /db_xref="GOA:Q05JD6" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:Q05JD6" FT /protein_id="BAF34865.1" FT /translation="MNNLVKALSAFEFIGVFSVLKFPVVIHSVPGSGKSSLIRELISED FT ESFVAFTAGVPDSPNLTGRYIKPYSPGCAVHGRVNILDEYLSVQDISGFDVLFSDPYQN FT ASIPREAHFIKSKTCRFGANTCKYLSSFGFKVSSDRLDNVIVGSPFTLDIEGVLICFGK FT EAVNLAVAHNSEFKLPCEVRGSTFEVVTLLKSRDPTPEDRHWFYIAATRHREKLIIMQ" FT CDS 1500..1853 FT /codon_start=1 FT /transl_table=1 FT /product="12.8 kDa hypothetical protein" FT /db_xref="GOA:Q05JD5" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q05JD5" FT /protein_id="BAF34866.1" FT /translation="MPFQQPANWAKTITPLTVGLGIGLVLHFLRKSNLPYSGDNIHQFP FT HGGRYRDGTKSITYCGPKQSFPSSGIFGQSENFLPLMLVIGLIAFIHVLSVWNSGLVRN FT CNCHPNPCSCRQQ" FT CDS 1774..2016 FT /codon_start=1 FT /transl_table=1 FT /product="8.4 kDa hypothetical protein" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:Q05JD4" FT /protein_id="BAF34867.1" FT /translation="MYCLFGILVLLGIVIAIQILAHVDSSSGTHQGCFIRATGESILIE FT NCGPSEALASTVREVLGGLKALGVSHTIEEIDYHC" FT CDS 2026..2805 FT /codon_start=1 FT /transl_table=1 FT /product="coat protein" FT /db_xref="GOA:Q05JD3" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:Q05JD3" FT /protein_id="BAF34868.1" FT /translation="MASQIGKLPGESNEAFEARLKALELARAQKQPEGSNTPPTLGGLL FT AKRKRVIENALSKTVDMREVLKHETVVISPNVMDEGAIDELIRAFGESGIAESAQFDVA FT IDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLE FT TGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEPKGGIKRAPTKAEMVANIASFEVQ FT VLRQAMAEGKRSSNLGEISGGTAGALINNPFSNVTHE" XX SQ Sequence 2876 BP; 807 A; 547 C; 707 G; 815 T; 0 other; tcaacatgct gtcctggtcc gctttgcacc ttatatgaga tacattgaga agaagctggt 60 gcaagctcta aagcccaact tctacatcca ttcaggtaaa ggcctagatg agttgaatga 120 gtgggttaaa gctagagggt ttactggcat ctgcacagaa tcagattatg aggcttttga 180 tgcttcccaa gaccatttca tcctagcatt tgagttgcag ataatgaaat ttttggggtt 240 gcctgaggat ctaattttgg attatgaatt cattaagatt cacttgggat caaagcttgg 300 ttcattttct ataatgaggt tcactgggga agcaagcaca ttcttgttca ataccatggc 360 taatatgttg ttcacttttc tgagatacga gctgacaggt tcagaatcaa tagcgtttgc 420 tggggatgac atgtgtgcca atcgaaggtt gcgactcaaa acagagcatg agggttttct 480 aaacatgata tgccttaagg ctaaggttca atttgtttcc aatcctacat tttgcggctg 540 gtgcttattc aaagaaggga tcttcaagaa gcctcagcta atctgggagc ggatatgcat 600 tgctagggag atgggcaacc tggataattg tattgacaat tatgcaatag aagtttccta 660 tgcatacaga ttgggtgagt tatccattga gatgatgaca gaggaagaag tggaggctca 720 ctacaattgt gtgagattcc tagttaggaa caagcacaag atgaggtgct caatttcagg 780 cctgtttgag gctgttgatt aggccttaag tttttggcat tgtttgaata ttatgaataa 840 tttagttaaa gcattatcag cctttgagtt tataggtgtt ttcagtgtgc tcaaatttcc 900 agttgtcatt cacagtgtgc caggtagtgg caaaagtagt ttaataaggg agttgatctc 960 cgaggacgaa agctttgtgg cttttactgc aggtgttcca gacagcccta atctcacagg 1020 aagatacatc aaaccttact ctccaggatg cgcagtgcat ggaagggtga atatactgga 1080 tgagtacttg tctgtccagg atatctcagg ttttgatgta ttgttttcag acccgtatca 1140 gaacgccagc attcctagag aggcacattt tattaagtcc aagacttgca gatttggtgc 1200 aaatacttgc aaatatcttt cctctttcgg tttcaaagtt agcagcgaca gattggacaa 1260 cgtcattgtg gggtcgcctt tcacgcttga tatagaaggg gtgctgatat gttttggtaa 1320 ggaagcagtg aacctcgctg ttgcgcacaa ctctgaattt aagttgcctt gtgaagttag 1380 aggctcgact tttgaagttg taacccttct gaaatcaaga gatccaaccc cagaggatag 1440 gcactggttt tacattgctg ccacaagaca tagggagaag ttaatcatta tgcagtaaaa 1500 tgccctttca gcagcctgct aattgggcaa agaccataac cccattgact gttggcttag 1560 gcattggact tgtgctacat tttctgagga agtcaaatct gccatattca ggggacaaca 1620 ttcatcaatt tccacacggg gggcgttaca gggatggtac aaagagtata acctactgtg 1680 gtcccaagca gtcattcccc agttcgggaa tatttggcca atctgaaaat tttttgccct 1740 taatgcttgt cataggtctg attgcattta tacatgtatt gtctgtttgg aattctggtc 1800 ttgttaggaa ttgtaattgc catccaaatc cttgctcatg tagacagcag tagtggcact 1860 caccaaggtt gctttatcag ggccactggc gaatcaatcc tgattgaaaa ttgcggccca 1920 agtgaagccc ttgcatccac tgtaagagag gtgttgggag gtttgaaggc tttaggggtt 1980 agccatacta tcgaagaaat tgattatcat tgttaaacag gctgaatggc gagtcaaatt 2040 ggaaaactcc ctggcgagtc taatgaagca tttgaagccc ggctaaaagc gctggagttg 2100 gctagagctc agaagcagcc agaaggctcc aacacaccac ccactctcgg tggcttgctt 2160 gcaaaacgta agagagttat tgaaaatgca ctctcgaaga ctgtggatat gagagaggtg 2220 ctaaaacatg aaacagtggt gatttcccca aatgttatgg atgagggtgc aatagatgag 2280 ctgattcgcg catttggaga gtctggcata gctgagagcg cacaatttga tgtggccata 2340 gatattgcac gtcactgctc tgatgttggt agctcccaaa ggtcaactct gataggcaaa 2400 agtccattct gtgatctgaa cagatcagaa atcgctggaa tcataaggga ggtgaccaca 2460 ttgcgcagat tttgcatgta ctatgcaaaa atcgtgtgga atatccatct ggagacgggg 2520 ataccaccag ctaattgggc caagaaaggg tttaatgaga atgaaaaatt tgcagccttt 2580 gacttctttc tgggagtcac agatgaaagt gcgcttgagc caaagggtgg aatcaaaaga 2640 gctccaacaa aagctgagat ggtcgctaat atcgcctctt ttgaggttca agtgctcaga 2700 caagctatgg ctgaaggcaa gcggagttcc aaccttggag aaattagtgg tggaacggct 2760 ggtgcactca tcaacaaccc cttctcaaat gtcacacatg aataagaagg atgaagccag 2820 taataactcc gtagcttaat aactccccga tttcaaggct gggttaagcc tgttcg 2876 //