ID AB277785; SV 1; linear; genomic RNA; STD; VRL; 2876 BP. XX AC AB277785; XX DT 13-OCT-2006 (Rel. 89, Created) DT 13-OCT-2006 (Rel. 89, Last updated, Version 1) XX DE Rupestris stem pitting-associated virus genes for RNA-dependent RNA DE polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, DE 8.4 kDa hypothetical protein, coat protein, partial and complete cds, DE strain: Hiz3. XX KW . XX OS Grapevine rupestris stem pitting-associated virus OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Quinvirinae; Foveavirus. XX RN [1] RP 1-2876 RA Nakaune R.; RT ; RL Submitted (11-OCT-2006) to the INSDC. RL Ryoji Nakaune, National Institute of Fruit Tree Science, Grape and RL Persimmon Research Station; Akitsu 301-2, Higashihiroshima, Hiroshima RL 729-2494, Japan (E-mail:une@affrc.go.jp, Tel:81846454756, Fax:81846455370) XX RN [2] RA Nakaune R., Nakano M.; RT "Rupestris stem pitting-associated virus related to rugose wood disease in RT Japanese grapevines"; RL Unpublished. XX DR MD5; fdf23972e9ff62176f6dc1c7c51579b5. XX FH Key Location/Qualifiers FH FT source 1..2876 FT /organism="Grapevine rupestris stem pitting-associated FT virus" FT /strain="Hiz3" FT /mol_type="genomic RNA" FT /country="Japan:Hiroshima" FT /isolation_source="Vitis labruscana cv. Pione" FT /db_xref="taxon:196400" FT CDS <1..802 FT /codon_start=2 FT /transl_table=1 FT /product="RNA-dependent RNA polymerase" FT /db_xref="GOA:Q05JE2" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q05JE2" FT /protein_id="BAF34859.1" FT /translation="QHAVLVRFAPYMRYIEKKLMQALKPNFYIHSGKGLDELNEWVRTR FT GFTGICTESDYEAFDASQDHFILAFELQIMKFLGLPEDLILDYEFIKIHLGSKLGSFSI FT MRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAGDDMCANRRLRLKTEHEGFLNMI FT CLKAKVQFVSNPTFCGWCLFKEGIFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAY FT RLGELSIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID" FT CDS 833..1498 FT /codon_start=1 FT /transl_table=1 FT /product="24.4 kDa hypothetical protein" FT /db_xref="GOA:Q05JE1" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:Q05JE1" FT /protein_id="BAF34860.1" FT /translation="MNNLVKALSAFEFVGVFSVLKFPVVIHSVPGSGKSSLIRELISED FT ENFIAFTAGVPDSPNLTGRYIKPYSPGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQN FT ISIPKEAHFIKSKTCRFGVNTCKYLSSFGFKVSSDGLDKVIVGSPFTLDVEGVLICFGK FT EAVDLAVAHNSEFKLPCEVRGSTFNVVTLLKSRDPTPEDRHWFYIATTRHREKLIIMQ" FT CDS 1500..1853 FT /codon_start=1 FT /transl_table=1 FT /product="12.8 kDa hypothetical protein" FT /db_xref="GOA:Q05JE0" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q05JE0" FT /protein_id="BAF34861.1" FT /translation="MPFQPPANWAKTITPLTVGLGIGLVLHFLRKSNLPYSGDNIHQFP FT HGGRYRDGTKSITYCGPKQSFPSSGIFGQSENFVPLMLVIGLIAFIHVLSVWNSGLGRN FT CNCHPNPCSCRQQ" FT CDS 1774..2016 FT /codon_start=1 FT /transl_table=1 FT /product="8.4 kDa hypothetical protein" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:Q05JD9" FT /protein_id="BAF34862.1" FT /translation="MYCLFGILVLVGIVIAIQILAHVDSSSGNHQGCFIRATGESILIE FT NCGPSEALASTVKEVLGGLKALGVSRAVEEIDYHC" FT CDS 2026..2805 FT /codon_start=1 FT /transl_table=1 FT /product="coat protein" FT /db_xref="GOA:Q05JD8" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:Q05JD8" FT /protein_id="BAF34863.1" FT /translation="MASQIGKLPGESNEAFEARLKSLELARAQKQPEGSNAPPTLSGIL FT AKRKRIIENALSKTVDMREVLKHETVVISPNVMDEGAIDELIRAFGESGIAESVQFDVA FT IDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLE FT TGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEPKGGIKRAPTKAEMVANIASFEVQ FT VLRQAMAEGKRSSNLGEISGGTAGALINNPFSNVTHE" XX SQ Sequence 2876 BP; 798 A; 539 C; 716 G; 823 T; 0 other; ccaacatgct gttctggttc gctttgcacc ctatatgaga tacattgaga aaaagctaat 60 gcaagctttg aagcctaact tctacatcca ttcagggaaa ggtctcgacg agctgaacga 120 gtgggtcagg actagaggat tcactggaat ttgcacagag tcagactacg aggcctttga 180 tgcttcccaa gaccacttca tcctagcatt cgaattgcag ataatgaaat ttttggggtt 240 gcctgaagat ttaattttgg actatgaatt cattaaaatt catttgggtt cgaagctcgg 300 atcattctct ataatgaggt ttactgggga agccagcaca tttctgttta acactatggc 360 taacatgttg ttcacctttc tgaggtacga actgacaggt tctgagtcaa tagcatttgc 420 tggtgatgac atgtgtgcta atcgaaggtt gcggcttaaa acagagcatg agggttttct 480 gaacatgatc tgccttaagg ccaaggttca gtttgtttcc aatcccacat tctgcggatg 540 gtgtttattt aaggaaggga tcttcaagaa accccaatta atctgggagc ggatatgcat 600 tgctagggag atgggtaacc tggagaattg tattgacaat tatgcgatag aggtctccta 660 tgcataccgg ctgggagagc tatccattga aatgatgacc gaggaggaag tggaggccca 720 ttataattgt gttagattct tggtcaggaa caagcataag atgagatgct caatttcagg 780 cctatttgaa gcgattgatt aggccttaag tatttggcat tatttgagta ttatgaataa 840 tttagttaaa gcattgtcag catttgagtt tgtaggtgtt ttcagtgtgc ttaaatttcc 900 agtagtcatt catagtgtgc ctggtagtgg taaaagtagc ttaataaggg agctgatttc 960 cgaggatgag aatttcatag ctttcacagc aggtgttcca gacagcccta atctcacagg 1020 aaggtacatt aagccttatt ctccagggtg tgcagtgcca ggtaaagtga atatacttga 1080 tgagtacttg tccgtccaag atttttcagg ttttgatgtg ctattctcgg acccatacca 1140 aaacatcagc attcctaaag aggcacattt catcaagtca aaaacttgca ggtttggcgt 1200 gaatacttgc aaatatcttt cctccttcgg ttttaaggtt agcagtgacg gtttggataa 1260 agtcattgtg gggtcgcctt ttacactaga tgttgaaggg gtgctaatat gctttggtaa 1320 ggaggcagtg gatctcgctg ttgcgcacaa ctctgaattc aaattacctt gtgaagttag 1380 aggttcaact tttaacgtcg taactctttt gaaatcaaga gatccaaccc cagaggatag 1440 gcactggttt tacattgcta ctacaagaca cagggagaaa ttgataatca tgcagtaaga 1500 tgccttttca gccgcctgcg aattgggcaa aaaccataac tccattgaca gttggcttgg 1560 gaattgggct tgtgctgcat tttctgagga agtcaaatct accttattca ggggacaaca 1620 tccatcaatt ccctcacggt gggcgttaca gggacggtac aaaaagtata acttactgtg 1680 gtccaaagca atcctttccc agctctggga tattcggcca atctgagaat tttgtgcctt 1740 taatgcttgt cataggtcta atcgcattca tacatgtatt gtctgtttgg aattctggtc 1800 ttggtaggaa ttgtaattgc catccaaatc cttgctcatg tagacagcag tagtggcaat 1860 caccaaggtt gcttcattag ggccactgga gagtcaattt tgattgagaa ctgcggccca 1920 agtgaggccc ttgcatccac tgtgaaggag gtgctgggag gtttgaaggc tttaggggtt 1980 agccgtgctg ttgaagaaat tgattatcat tgttaaattg gctgaatggc aagtcaaatt 2040 gggaaactcc ccggtgaatc aaatgaggct tttgaagccc ggctaaaatc gctggagtta 2100 gctagagctc aaaagcagcc ggaaggttct aatgcaccac ctactctcag tggcattctt 2160 gccaaacgca agaggattat agagaatgca ctttcaaaga cggtggacat gagggaggtt 2220 ttgaaacacg aaacggtggt gatttcccca aatgtcatgg atgaaggtgc aatagacgag 2280 ctgattcgtg catttggtga atctggcata gctgaaagcg tgcaatttga tgtggctata 2340 gatatagcac gtcactgctc tgatgttggt agctcccaga ggtcaaccct gataggcaag 2400 agtccatttt gtgacctaaa cagatcagaa atagctggga ttataaggga ggtgaccaca 2460 ttacgtagat tttgcatgta ctatgcaaaa atcgtgtgga acatccatct ggagacgggg 2520 ataccaccag ctaactgggc caagaaagga tttaatgaga atgaaaagtt tgcagccttt 2580 gattttttct tgggagtcac agatgagagt gcgcttgagc caaagggtgg aattaaaaga 2640 gctccaacga aagctgagat ggttgctaat atcgcctctt ttgaggttca agtgctcaga 2700 caagctatgg ctgaaggcaa gcggagttcc aaccttggag agattagtgg tggaacggct 2760 ggtgcactca tcaacaaccc cttttcaaat gttacacatg aataaggggg atgaagtcag 2820 cgacaattcc gcagttcaat aattccccga tttcaaggct gggttaagcc tgttcg 2876 //