ID AB277783; SV 1; linear; genomic RNA; STD; VRL; 2876 BP. XX AC AB277783; XX DT 13-OCT-2006 (Rel. 89, Created) DT 13-OCT-2006 (Rel. 89, Last updated, Version 1) XX DE Rupestris stem pitting-associated virus genes for RNA-dependent RNA DE polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, DE 8.4 kDa hypothetical protein, coat protein, partial and complete cds, DE strain: OB1. XX KW . XX OS Grapevine rupestris stem pitting-associated virus OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Quinvirinae; Foveavirus. XX RN [1] RP 1-2876 RA Nakaune R.; RT ; RL Submitted (11-OCT-2006) to the INSDC. RL Ryoji Nakaune, National Institute of Fruit Tree Science, Grape and RL Persimmon Research Station; Akitsu 301-2, Higashihiroshima, Hiroshima RL 729-2494, Japan (E-mail:une@affrc.go.jp, Tel:81846454756, Fax:81846455370) XX RN [2] RA Nakaune R., Nakano M.; RT "Rupestris stem pitting-associated virus related to rugose wood disease in RT Japanese grapevines"; RL Unpublished. XX DR MD5; 388018784cd99ce2add0554181499f65. XX FH Key Location/Qualifiers FH FT source 1..2876 FT /organism="Grapevine rupestris stem pitting-associated FT virus" FT /strain="OB1" FT /mol_type="genomic RNA" FT /country="Japan:Okayama" FT /isolation_source="Vitis labruscana cv. Pione" FT /db_xref="taxon:196400" FT CDS <1..802 FT /codon_start=2 FT /transl_table=1 FT /product="RNA-dependent RNA polymerase" FT /db_xref="GOA:Q05JF2" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q05JF2" FT /protein_id="BAF34849.1" FT /translation="QHAVLVRFAPYMRYIEKKLMQALKPNFYIHSGKGLDELNEWVKAR FT NFTGICTESDYEAFDASQDHFILSFELQVMRFLGLPEDLILDYEFIKIHLGSKLGSFAI FT MRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAGDDMCANSRLRLKTEHEGFLNMI FT CLKAKVQFVTNPTFCGWCLFKEGIFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAY FT RLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID" FT CDS 833..1498 FT /codon_start=1 FT /transl_table=1 FT /product="24.4 kDa hypothetical protein" FT /db_xref="GOA:Q05JF1" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:Q05JF1" FT /protein_id="BAF34850.1" FT /translation="MNNLVKALSTFEFVGIYSVLRFPVVVHSVPGSGKSSLIRELVTED FT ESFIAFTAGVPDTPNLSGRYIKPYSPGCAVKGKINILDEYLSVSDISGFDVLFSDPYQN FT ISVPREAHFIKSKTCRFGENTCKYLLSFGFNLHSDRSDEVITGSPFELDVEGVLICFGK FT EAVDLAAAHNSDFKLPCEVRGATFDVVTLLKSRDPTSDDKHWFYIAATRHRKKLIIMQ" FT CDS 1500..1853 FT /codon_start=1 FT /transl_table=1 FT /product="12.8 kDa hypothetical protein" FT /db_xref="GOA:Q05JF0" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q05JF0" FT /protein_id="BAF34851.1" FT /translation="MPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFP FT HGGRYRDGTKSITYCGPKQSFPSSGLFGQSENFVPLIIVIVLTASIYVLSVWNSGSCRR FT CNCNPNPCTCRQQ" FT CDS 1774..2016 FT /codon_start=1 FT /transl_table=1 FT /product="8.4 kDa hypothetical protein" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:Q05JE9" FT /protein_id="BAF34852.1" FT /translation="MYYLFGILVLVGAAIATLILAHVDSNNGDNHGCLIRATGESILIE FT NCGPSEALASTIKEVLGGLKALGVSHIGEEIDYHC" FT CDS 2026..2805 FT /codon_start=1 FT /transl_table=1 FT /product="coat protein" FT /db_xref="GOA:Q2TE89" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:Q2TE89" FT /protein_id="BAF34853.1" FT /translation="MASPPGRLPGESNEAFEARLKSLELARAQKQPEGSNQPPVLGGIL FT AKRKRVIENALSKTVDMREVLKHESVVLSPNVMDEGAIDELIRAFGESGISESDQFNVA FT IDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLE FT TGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEPKGGVKRAPTKAEMVANIASFEVK FT VLRQTMAEGKRSSNLGEISGGTAGALINNPFANVTHE" XX SQ Sequence 2876 BP; 790 A; 525 C; 706 G; 855 T; 0 other; tcaacatgca gttttggttc gttttgctcc ttatatgagg tacattgaaa agaagctcat 60 gcaagcttta aaaccaaatt tttacattca ctctggtaaa ggtcttgatg aacttaatga 120 atgggttaaa gcgcgaaact ttacaggcat ttgcacagaa tcagattatg aggcatttga 180 tgcctctcag gatcacttca tcttgtcatt tgagttgcaa gtaatgcggt ttttagggct 240 gccagaggac ttgatcttgg attatgagtt catcaagatt catcttggat ccaagcttgg 300 atcttttgct ataatgagat ttacgggtga agccagtacc tttttgttta acacaatggc 360 gaatatgttg tttacattct taaggtacga actgacaggg tccgagtcaa ttgcttttgc 420 gggcgatgac atgtgcgcta acagcagatt aaggcttaag actgaacatg aagggttcct 480 aaatatgatt tgccttaaag ctaaggtgca atttgtcaca aaccccacat tttgtggatg 540 gtgtttgttt aaagaaggga tctttaagaa accccaactc atttgggaga gaatttgcat 600 tgctcgtgaa atgggtaacc tggagaactg cattgataac tatgcaattg aggtatccta 660 tgcctacagg ctgggcgagt tgtcaattga aatgatgaat gaagaggaag ttgaagcaca 720 ctacaactgt gtgcggttcc tagttagaaa taaacacaag atgaggtgct caatttctgg 780 gttgtttgaa gctatagatt aggccttaag tatttggcat ggtgtgatta ttatgaataa 840 cttagttaaa gctttgtcta cgtttgagtt tgtgggtatt tatagcgtgc tcagatttcc 900 agttgttgtt cacagcgttc ctggtagtgg taaaagcagt ttaataagag aacttgtcac 960 tgaggacgag agtttcatag cctttacggc cggcgttccc gacactccca acctctctgg 1020 gaggtacatt aagccatact ctcctggttg tgctgtaaag gggaagataa acatacttga 1080 tgagtatctg tctgtaagtg acatttctgg ttttgacgtg ttattttctg acccatatca 1140 aaatatcagt gttccaaggg aggctcactt cataaagtca aagacctgca gatttggcga 1200 aaatacatgt aagtaccttc tgtcctttgg ttttaatttg catagtgaca ggtctgatga 1260 agtgattaca ggctcgccat ttgagttgga tgttgagggt gtgctgattt gctttggcaa 1320 ggaggcagtt gatttagcgg ctgcgcataa ttccgatttc aaacttcctt gtgaggtacg 1380 aggtgctaca tttgatgttg ttaccttatt gaaatcaagg gatccgacct ccgatgataa 1440 gcactggttc tacattgctg caacaagaca tagaaagaaa ttgatcatca tgcagtgaaa 1500 tgccttttca gcaacctgcg aattgggcca aaactatcac cccattgacg attggcttgg 1560 gcattggctt agtgcttcat ttcctaagaa agtcaaattt gccatactca ggggacaaca 1620 tacatcaatt tccacatgga gggcgttata gggacggcac caaaagcata acatattgtg 1680 gtcccaaaca gtcattccca agctctgggc tttttggtca gtctgagaat tttgtgcctt 1740 taataattgt aatagtatta acggcctcca tatatgtact atctgtttgg aattctggtt 1800 cttgtaggcg ctgcaattgc aaccctaatc cttgcacatg tcgacagcaa taatggtgat 1860 aatcatggtt gtctcataag ggctacaggg gagtcaatat taattgagaa ttgtggccca 1920 agtgaggcgc ttgcttcaac aattaaggaa gtgttgggag gtttgaaggc tttaggggtt 1980 agccatattg gtgaagaaat tgattatcat tgttaacatt gtcatatggc gagcccacca 2040 ggaaggttgc caggtgagtc aaatgaagct tttgaggcca gactgaaatc tttggagctg 2100 gcaagagctc aaaagcagcc tgaaggttct aaccaacctc ctgttcttgg tggcattctt 2160 gctaaaagaa agagggtcat tgaaaatgct ctttcaaaaa ctgtggacat gcgggaggtg 2220 ttgaagcacg agtctgttgt gctatctcct aatgttatgg atgaaggtgc aatagatgag 2280 ttgattcgag cattcggtga gtctggcata tcagagagcg atcagtttaa cgttgcgata 2340 gatattgcac gccattgctc tgacgttggt agctctcaaa gatcaacctt aattggaaag 2400 agtcccttct gtgacctgaa taggtctgaa attgctggaa taattaggga agtgactacc 2460 ctgcgcagat tttgcatgta ctatgcaaaa atcgtgtgga acatccatct ggagacgggg 2520 attccacccg ctaattgggc caagaaggga tttaatgaaa atgaaaagtt tgcagccttt 2580 gacttcttcc ttggagtcac agatgagagc gcgcttgaac caaagggtgg cgttaagaga 2640 gctccaacca aagctgagat ggtcgctaat atcgcctctt ttgaggtcaa ggtgctcaga 2700 caaactatgg ctgaaggaaa gcggagctcc aatcttggag agattagtgg cggaactgct 2760 ggtgctctta tcaataaccc cttcgcaaat gtcactcatg aatgagatgc ataaaggggg 2820 cggtggccct cagtgttaat aattccccga tttcaaggct gggttaagcc tgttcg 2876 //