ID AB276030; SV 1; linear; genomic RNA; STD; VRL; 6356 BP. XX AC AB276030; XX DT 14-APR-2007 (Rel. 91, Created) DT 30-JAN-2009 (Rel. 99, Last updated, Version 3) XX DE Pepper mild mottle virus genomic RNA, complete genome, strain: L4BV. XX KW . XX OS Pepper mild mottle virus OC Viruses; Riboviria; Virgaviridae; Tobamovirus. XX RN [1] RP 1-6356 RA Tsuda S.; RT ; RL Submitted (03-OCT-2006) to the INSDC. RL Contact:Shinya Tsuda NARC, Dept. of Plant Pathology; Kan-nondai, Tsukuba, RL Ibaraki 305-8666, Japan XX RN [2] RX DOI; 10.1094/PHYTO-97-7-0787. RX PUBMED; 18943927. RA Genda Y., Kanda A., Hamada H., Sato K., Ohnishi J., Tsuda S.; RT "Two Amino Acid Substitutions in the Coat Protein of Pepper mild mottle RT virus Are Responsible for Overcoming the L(4) Gene-Mediated Resistance in RT Capsicum spp"; RL Phytopathology 97(7):787-793(2007). XX DR MD5; e8fe5df75096a2042000269e52298e3f. DR EuropePMC; PMC5264247; 28144631. DR RFAM; RF01072; TMV_UPD-PK3. DR RFAM; RF01088; TLS-PK5. XX FH Key Location/Qualifiers FH FT source 1..6356 FT /organism="Pepper mild mottle virus" FT /strain="L4BV" FT /mol_type="genomic RNA" FT /country="Japan:Hokkaido" FT /isolation_source="Green pepper" FT /collection_date="2003" FT /db_xref="taxon:12239" FT CDS 70..4908 FT /codon_start=1 FT /transl_table=1 FT /transl_except=(pos:3421..3423,aa:OTHER) FT /product="180k replication protein" FT /note="readthrough product" FT /db_xref="GOA:A4PE19" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:A4PE19" FT /protein_id="BAF52937.1" FT /translation="MAYTQQATNAALASTLRGNNPLVNDLANRRLYESAVEQCNAHDRR FT PKVNFLRSISEEQTLIATKAYPEFQITFYNTQNAVHSLAGGLRSLELEYLMMQIPYGST FT TYDIGGNFAAHMFKGRDYVHCCMPNMDLRDVMRHNAQKDSIELYLSKLAQKKKVIPPYQ FT KPVFDKYTDDPQSVVCSKPFQHCEGVSHCTDKVYAVALHSLYDIPADEFGAALLRRNVH FT VCYAAFHFSENLLLEDSYVSLDDIGAFFSREGDMLNFSFVAESTLNYTHSYSNVLKYVC FT KTYFPASSREVYMKEFLVTRVNTWFCKFSRLDTFVLYRGVYHRGVDKEQFYSAMEDAWH FT YKKTLAMMNSERILLEDSSSVNYWFPKMKDMVIVPLFDVSLQNEGKRLARKEVMVSKDF FT VYTVLNHIRTYQSKALTYANVLSFVESIRSRVIINGVTARSEWDVDKALLQSLSMTFFL FT QTKLAMLKDDLVVQKFQVHSKSLTEYVWDEITAAFHNCFPTIKERLINKKLITVSEKAL FT EIKVPDLYVTFHDRLVKEYKSSVEMPVLDVKKSLEEAEVMYNALSEISILKDSDKFDVD FT VFSRMCNTLGVDPLVAAKVMVAVVSNESGLTLTFERPTEANVALALQPTIASKEEGSLK FT IVSSDVGESSIKEVVRKSEISMLGLTGSTVSDEFQRSTEIESLQQFHMVSTETIIRKQM FT HAMVYTGPLKVQQCKNYLDSLVASLSAAVSNLKKIIKDTAAIDLETKEKFGVYDVCLKK FT WLVKPQSKGHAWGVVMDSDYKCFVALLTYDGENIVCGETWRRVAVSSESLVYSDMGKIR FT AIRSVLKDGEPHISSAKVTLVDGVPGCGKTKEILSRVNFDEDLVLVPGKQAAEMIRRRA FT NSSGLIVATKENVRTVDSFLMNYGRGPCQYKRLFLDEGLMLHPGCVNFLVGMSLCSEAF FT VYGDTQQIPYINRVATFPYPKHLSQLEVDAVETRRTTLRCPADITFFLNQKYEGQVMCT FT SSVTRSVSHEVIQGAAVMNPVSKPLKGKVITFTQSDKSLLLSRGYEDVHTVHEVQGETF FT EDVSLVRLTPTPVGIISKQSPHLLVSLSRHTRSIKYYTVVLDAVVSVLRDLECVSSYLL FT DMYKVDVSTQXQLQIESVYKGVNLFVAAPKTGDVSDMQYYYDKCLPGNSTILNEYDAVT FT MQIRENNLNVKDCVLDMSKSVPLPRESETTLKPVIRTAAEKPRKPGLLENLVAMIKRNF FT NSPELIGVVDIEDTASLVVDKFFDAYFIKEKKKPKNIPLLSRASLERWIEKQEKSTIGQ FT LADFDFIDLPAVDQYRHMIKQQPKQRLDLSIQTEYPALQTIVYHSKKINALFGPVFSEL FT TRQLLESIDSSRFMFYTRKTPTQIEEFFSDLDSNVPMDILELDISKYDKSQNEFHCAVE FT YEIWKRLGLDDFLAEVWKHGHRKTTLKDYTAGIKTCLWYQRKSGDVTTFIGNTIIIAAC FT LSSMLPMERLIKGAFCGDDSILYFPKGTDFPDIQQGANLLWNFEAKLFRKRYGYFCGRY FT IIHHDRGCIVYYDPLKLISKLGAKHIKNREHLEEFRTSLCDVAGSLNNCAYYTHLDDAV FT GEVIKTAPPGSFVYRALVKYLCDKRLFQTLFLE" FT CDS 70..3423 FT /codon_start=1 FT /transl_table=1 FT /product="130k replication protein" FT /db_xref="GOA:A4PE20" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:A4PE20" FT /protein_id="BAF52938.1" FT /translation="MAYTQQATNAALASTLRGNNPLVNDLANRRLYESAVEQCNAHDRR FT PKVNFLRSISEEQTLIATKAYPEFQITFYNTQNAVHSLAGGLRSLELEYLMMQIPYGST FT TYDIGGNFAAHMFKGRDYVHCCMPNMDLRDVMRHNAQKDSIELYLSKLAQKKKVIPPYQ FT KPVFDKYTDDPQSVVCSKPFQHCEGVSHCTDKVYAVALHSLYDIPADEFGAALLRRNVH FT VCYAAFHFSENLLLEDSYVSLDDIGAFFSREGDMLNFSFVAESTLNYTHSYSNVLKYVC FT KTYFPASSREVYMKEFLVTRVNTWFCKFSRLDTFVLYRGVYHRGVDKEQFYSAMEDAWH FT YKKTLAMMNSERILLEDSSSVNYWFPKMKDMVIVPLFDVSLQNEGKRLARKEVMVSKDF FT VYTVLNHIRTYQSKALTYANVLSFVESIRSRVIINGVTARSEWDVDKALLQSLSMTFFL FT QTKLAMLKDDLVVQKFQVHSKSLTEYVWDEITAAFHNCFPTIKERLINKKLITVSEKAL FT EIKVPDLYVTFHDRLVKEYKSSVEMPVLDVKKSLEEAEVMYNALSEISILKDSDKFDVD FT VFSRMCNTLGVDPLVAAKVMVAVVSNESGLTLTFERPTEANVALALQPTIASKEEGSLK FT IVSSDVGESSIKEVVRKSEISMLGLTGSTVSDEFQRSTEIESLQQFHMVSTETIIRKQM FT HAMVYTGPLKVQQCKNYLDSLVASLSAAVSNLKKIIKDTAAIDLETKEKFGVYDVCLKK FT WLVKPQSKGHAWGVVMDSDYKCFVALLTYDGENIVCGETWRRVAVSSESLVYSDMGKIR FT AIRSVLKDGEPHISSAKVTLVDGVPGCGKTKEILSRVNFDEDLVLVPGKQAAEMIRRRA FT NSSGLIVATKENVRTVDSFLMNYGRGPCQYKRLFLDEGLMLHPGCVNFLVGMSLCSEAF FT VYGDTQQIPYINRVATFPYPKHLSQLEVDAVETRRTTLRCPADITFFLNQKYEGQVMCT FT SSVTRSVSHEVIQGAAVMNPVSKPLKGKVITFTQSDKSLLLSRGYEDVHTVHEVQGETF FT EDVSLVRLTPTPVGIISKQSPHLLVSLSRHTRSIKYYTVVLDAVVSVLRDLECVSSYLL FT DMYKVDVSTQ" FT CDS 4909..5682 FT /codon_start=1 FT /transl_table=1 FT /gene="MP" FT /product="cell-to-cell movement protein" FT /db_xref="GOA:A4PE21" FT /db_xref="InterPro:IPR001022" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:A4PE21" FT /protein_id="BAF52939.1" FT /translation="MALVVKDDVKISEFINLSTAEKFLPAVMTSVKTVRISKVDKVIAM FT ENDSLSDVDLLKGVKLVKDGYVCLAGLVVSGEWNLPDNCRGGVSVCLVDKRMQRDDEAT FT LGSYRTSAAKKRFAFKLIPNYSITTADAERNVWQVLVNIRGVAMEKGFCPLSLEFVSVC FT IVHKSNIKLGLREKITSVSEGGPVELTEAVVDEFIESVPMADRLRKFRNQSKKRSNKYV FT GKRNDNKGVNKERKLFDKVRIGQNSESSDAESSSF" FT CDS 5685..6158 FT /codon_start=1 FT /transl_table=1 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:A4PE22" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:A4PE22" FT /protein_id="BAF52940.1" FT /translation="MAYTVSSANQLVYLGSVWADPLELQNLCTSALGNQFQTQQARTTV FT QRQFSDVWKTIPTATVRFPATGFKVFRYNAVLDSLVSALLKAFDTRNRIIEVENPQNPT FT TAETLDATRRVDDATVAIRASISNLMNELVRGTGMYNQALFESASGLTWATTP" XX SQ Sequence 6356 BP; 1886 A; 1164 C; 1515 G; 1791 T; 0 other; gtaaattttt cacaatttaa caacaacaac acaaacaaca aacaacatta caaacaaatt 60 acaactacaa tggcttacac acaacaagct accaacgccg cattagcaag tactctccga 120 gggaacaacc ccttggtgaa cgatcttgct aatcggagac tgtacgaatc agcggtcgaa 180 caatgcaatg cacatgaccg caggcccaag gttaattttt taaggtcgat aagcgaagag 240 cagacgctta tcgcaactaa ggcctaccct gagttccaaa ttacgttcta caacacgcag 300 aacgctgtgc acagtctcgc aggtggactt cggtctttgg aactagaata cttgatgatg 360 cagatcccct atggttcaac gacatacgat atcgggggaa attttgctgc tcacatgttt 420 aaaggtcgtg actacgttca ttgttgcatg cctaatatgg acttacgtga cgtcatgcgt 480 cacaatgctc aaaaggatag cattgaactg tacctttcaa agcttgcgca aaagaaaaag 540 gtaataccgc catatcaaaa gccagtcttt gataaataca cggacgatcc gcaatcggta 600 gtgtgctcga aacctttcca gcactgcgaa ggcgtttcgc actgcacgga taaagtatac 660 gctgttgctt tgcacagttt atacgacatt ccggcagatg aatttggtgc agcacttctg 720 aggagaaatg ttcatgtctg ttatgctgcc ttccactttt ctgagaatct tcttttagaa 780 gattcgtatg ttagtcttga cgacataggc gctttcttct cgagagaggg tgatatgttg 840 aacttttcct ttgtagcaga gagtacttta aattatactc attcctatag taatgtgctt 900 aagtatgtgt gtaagactta cttccccgct tctagtagag aagtgtacat gaaggagttt 960 ttggtaacta gggtaaatac ttggttttgt aagttttcaa ggttagatac ctttgtacta 1020 tatagaggtg tgtaccacag aggtgtagac aaggagcaat tttatagtgc aatggaagat 1080 gcttggcatt acaaaaagac tttggcaatg atgaatagcg aaaggatcct cttggaggat 1140 tcatcgtctg ttaattattg gtttccaaag atgaaagata tggtgatagt acctttgttc 1200 gacgtatctt tacagaacga ggggaaaagg ttagcaagaa aggaggttat ggtcagcaag 1260 gacttcgttt atactgtgct taatcatatt cgcacatacc agtcgaaagc gcttacttac 1320 gccaatgtat tatcgttcgt tgagtcgata agatcaagag tgataattaa tggggtgact 1380 gcgcgctcag agtgggatgt ggacaaggct ttgttgcagt ctctgtcaat gacctttttc 1440 ttgcagacca aattggccat gctcaaagat gacctcgtgg ttcaaaaatt tcaagtgcat 1500 tctaaatcgc tcactgaata tgtctgggat gagattactg ccgcttttca caactgtttt 1560 cctacaatca aggagaggtt gattaacaag aaactcataa ctgtttcgga aaaggctctt 1620 gaaattaaag tacctgactt gtatgtgacc ttccacgaca gattagttaa agagtacaag 1680 tcttcagtgg aaatgccagt actggacgtt aaaaagagct tggaagaagc agaagtgatg 1740 tacaatgctt tgtcagaaat ctcaattctt aaggatagtg acaagtttga tgttgatgtt 1800 ttttcccgaa tgtgtaatac tttaggcgta gatccattgg tggcagcaaa ggtaatggta 1860 gccgtggttt caaatgagag tggtttgacc ttaacgtttg agcggcctac cgaagcaaat 1920 gtcgcacttg cattgcaacc gacaattgca tcaaaggagg aaggttcatt aaagattgtg 1980 tcgtcagacg taggtgagtc ctcaatcaag gaagtggtcc gaaaatcgga gatttctatg 2040 ctaggtctaa caggcagcac agtgtccgat gagttccaaa gaagtacaga aatcgagtcg 2100 ttgcagcagt tccatatggt atccacagag acgattatcc gtaaacagat gcatgcgatg 2160 gtgtatactg gtccgctaaa agttcaacaa tgcaagaact atttagacag cctagtagcc 2220 tcgctctctg ctgcggtatc aaacctgaag aagataatca aggacacagc tgcgatagat 2280 ctcgagacta aggaaaaatt tggagtctac gacgtgtgcc ttaagaaatg gttggtgaaa 2340 cctcaatcaa aaggacatgc ttggggtgtg gtgatggact cagactataa gtgctttgta 2400 gcgcttctca catacgatgg cgagaacatt gtgtgcggag agacatggcg tagagtcgca 2460 gtgagctccg aatctttggt gtattcagat atggggaaga taagagctat acgctcagtg 2520 cttaaagacg gtgaacccca tataagtagt gcaaaggtta cacttgttga tggtgttcca 2580 ggttgcggga agacaaagga gattctttcg agggtcaact ttgacgaaga tctggttcta 2640 gtaccaggaa aacaggctgc cgaaatgata agaagaagag caaacagttc tggtttaatc 2700 gtggcgacca aggagaacgt aaggacggta gactctttct taatgaatta cggtcgaggt 2760 ccgtgccaat acaaaaggct gtttctggat gaaggtctaa tgttacaccc cggttgtgtt 2820 aattttctgg ttggcatgtc tctatgctcc gaggcttttg tttatggaga cacccagcag 2880 attccttaca tcaacagagt tgcaactttt ccctatccta agcatttgag tcaactcgag 2940 gtcgatgctg ttgagactcg cagaacaaca ttgcggtgtc cggctgatat caccttcttc 3000 ttgaatcaga agtacgaagg gcaagttatg tgcacatcaa gtgttacacg ctcggtgtca 3060 cacgaggtca tccaaggtgc agcagtaatg aatccagtgt ctaaaccact taaagggaag 3120 gtgattacat tcactcaatc agacaagtca ttgctgctct caaggggtta cgaagatgtg 3180 cataccgttc atgaggtgca aggggaaacg tttgaagacg tctcattagt gagactgacg 3240 cctacacccg tgggaataat ttcaaagcag agtccgcacc tgttggtctc gttgtctagg 3300 catacaaggt caatcaaata ttacactgtt gtactagatg cagtcgtttc agtgcttaga 3360 gatttggagt gtgtgagtag ttacctgtta gatatgtaca aagttgatgt gtcgactcaa 3420 tagcaattac agatagaatc ggtgtacaaa ggtgttaacc ttttcgtcgc agccccgaaa 3480 acaggagatg tttctgacat gcaatattat tatgacaagt gtttgccggg aaacagtact 3540 atacttaatg agtatgatgc tgtaactatg caaatacgag aaaataattt gaatgtcaaa 3600 gattgtgtgt tggatatgtc gaagtcggtg cctcttccga gagaatctga gacgacattg 3660 aaacctgtga tcaggactgc tgctgaaaaa cctcgaaaac ctggattgtt ggaaaacttg 3720 gttgcgatga tcaaaagaaa tttcaactct cccgaattaa taggggtcgt tgacatcgaa 3780 gacaccgctt ctctagtagt agataagttt tttgatgcat actttattaa agaaaagaaa 3840 aaacccaaaa atatacctct gctttcaagg gcgagtttgg aaagatggat agaaaagcaa 3900 gaaaagtcga caattggcca gttggctgat tttgacttta ttgatcttcc agccgttgat 3960 caatataggc acatgatcaa gcagcagccg aaacagcgtt tggatcttag tattcaaact 4020 gaatacccgg ctttgcaaac tattgtgtat catagcaaga aaatcaatgc gctttttggt 4080 cctgtatttt cagaattaac aagacaactg ctagagtcaa ttgacagttc gagattcatg 4140 ttttatacaa ggaaaacgcc tacacagatc gaagagtttt tctcagatct ggactctaat 4200 gttcctatgg acatattaga gctggacatt tccaagtatg acaaatcaca gaacgaattt 4260 cattgtgcag ttgagtatga gatttggaaa aggttaggct tagacgattt cttggccgaa 4320 gtttggaaac acgggcatcg gaagacaacg ttgaaagact acacagccgg aataaaaacg 4380 tgtttgtggt atcaaaggaa aagtggtgat gtcaccacat tcattggaaa cacgatcatt 4440 attgctgcat gtctgtcctc tatgctaccg atggagagat tgattaaagg tgccttttgt 4500 ggtgatgata gtatactata ctttccaaag ggcactgatt tccctgatat tcaacagggt 4560 gcaaatcttc tctggaattt tgaagccaag ttgtttagga agagatatgg ttacttttgc 4620 ggtaggtaca taatccacca tgacagaggt tgtattgtat attatgaccc tctaaaattg 4680 atctcgaaac tcggtgctaa acacatcaag aatagagaac atttagagga atttaggacc 4740 tctctttgtg atgttgctgg gtcgttgaac aattgtgcat actatacaca tttggacgac 4800 gctgtcggtg aggttattaa aaccgcacct cctggttcgt ttgtttatag agcattagtt 4860 aagtacttgt gtgataaaag gttgtttcaa acattgtttc tggaataaat ggcgttagta 4920 gtcaaggatg acgttaagat ttctgagttc atcaatttgt ctaccgctga gaaattctta 4980 cctgctgtta tgacttcggt caagacggta cgaatttcga aagttgacaa agtgattgca 5040 atggaaaacg attcgttatc cgatgtagat ttgcttaaag gtgttaagct tgttaaagat 5100 ggttatgtgt gtttggcagg gttagttgtg tccggggagt ggaacctacc ggacaactgc 5160 agaggtggag taagcgtttg tttggttgac aagagaatgc aaagagatga cgaagcaaca 5220 cttggatctt atagaaccag tgcggctaag aaacgatttg ccttcaaatt gattccgaat 5280 tatagcatta ctaccgccga tgctgagaga aatgtttggc aagttttagt taatattaga 5340 ggtgttgcca tggaaaaggg tttctgtcct ttatctttgg agtttgtctc agtttgtatt 5400 gtacacaaat ccaatataaa attaggcttg agagagaaaa ttactagtgt gtcggaagga 5460 ggacccgttg aacttacaga agcagttgtt gatgagttca tcgaatcagt tccaatggct 5520 gacagattac gtaaatttcg caatcaatcc aagaaaagaa gtaataagta tgtaggtaag 5580 agaaatgata ataagggtgt gaataaggaa aggaagctgt ttgataaggt tagaattggg 5640 cagaactcgg agtcatcgga cgccgagtct tcttcgtttt aactatggct tacacagttt 5700 ccagtgccaa tcaattagtg tatttaggtt ctgtatgggc cgatccatta gagttacaaa 5760 atctatgtac ttcggcgtta ggtaatcagt ttcaaacaca gcaggctaga actacggttc 5820 aacggcagtt ctctgatgtg tggaagacca taccgaccgc tacagttaga tttcctgcta 5880 ctggtttcaa agttttccga tataatgccg tgctagattc actagtgtcg gcacttctca 5940 aagcctttga tactaggaat aggataatag aagtagaaaa tccgcaaaat cctacaactg 6000 ccgagacgct tgatgcgacg aggcgggtag atgatgcgac ggtggccatt agggccagta 6060 taagtaacct catgaatgag ttagttcgtg gcacgggaat gtacaatcaa gctctgttcg 6120 agagcgcgag tggactcacc tgggctacaa ctccttagac atgatggtgt aaataagttg 6180 gacgaacgtt aaacgtccgt ggcgagtacg ataactcgta gtgtttttcc ctccacttaa 6240 atcgaagggt tgtcgttagg atggaacgca attaaataca tgtgtgacgt gtatttgcga 6300 acgacgtaat tattttcagg ggttcgaatc ccccccgaac cgcgggtagc ggccca 6356 //