ID   AB267341; SV 1; linear; genomic RNA; STD; VRL; 1527 BP.
XX
AC   AB267341;
XX
DT   04-JUL-2007 (Rel. 92, Created)
DT   04-JUL-2007 (Rel. 92, Last updated, Version 1)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: TYD087J.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1527
RA   Ohshima K.;
RT   ;
RL   Submitted (28-JUL-2006) to the INSDC.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RX   DOI; 10.1007/s10327-007-0003-2.
RX   AGRICOLA; IND43928796.
RA   Tomitaka Y., Yamashita T., Ohshima K.;
RT   "The genetic structure of populations of Turnip mosaic virus in Kyushu and
RT   central Honshu, Japan";
RL   J. Gen. Plant Pathol. 73(3):197-208(2007).
XX
DR   MD5; a516164bf0f9c32548a5ded40d8f7d14.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1527
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="TYD087J"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   CDS             <1..>1527
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:A6P4P7"
FT                   /db_xref="InterPro:IPR001730"
FT                   /db_xref="InterPro:IPR009003"
FT                   /db_xref="UniProtKB/TrEMBL:A6P4P7"
FT                   /protein_id="BAF68949.1"
FT                   /translation="SDGISRHFMSEYGALEAVHHQNTNDMSKFLKLKGKWNKTLITRDV
FT                   LVLCGVFGGGMWMIIQHLRSKISEPVTHEAKGKRQRQKLKFRNARDNKMGREVYGDDDV
FT                   IEHFFGDAYTKKGKSKGRTRGLGHKNRKFINMYGFDPEDFSAVRFVDPLTGATLDDNPF
FT                   TDISLVQKHFGDIRMDLLGEDELEPDELRMHKTIQAYYMNNKTGKALKVDLTPHVPLKV
FT                   CDLHATIAGFPEREHELRQTGKAQPIDISEIPKANTELVPVDHESSSMFRGLRDYNPIS
FT                   NNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELVIKSRHGEFVIKNTTQLHL
FT                   LPIPDRDLLLIRLPKDIPPFPQKLGFRQPEKGERICMVGSNFQTKSITSVVSETSTIMP
FT                   VENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDDFAEKYLC
FT                   TIEAHEWVKHWKYNTSAISWGSLNIQASQPAGLFKVSKLISDLDSTAVYAQ"
FT   mat_peptide     <1..63
FT                   /gene="CI"
FT                   /product="CI protein"
FT   mat_peptide     64..222
FT                   /gene="6K2"
FT                   /product="6K2 protein"
FT   mat_peptide     223..798
FT                   /gene="NIa-VPg"
FT                   /product="NIa-VPg protein"
FT   mat_peptide     799..>1527
FT                   /gene="NIa-Pro"
FT                   /product="NIa-Pro protein"
XX
SQ   Sequence 1527 BP; 488 A; 337 C; 362 G; 340 T; 0 other;
     agtgatggaa tatcccgtca ttttatgagt gaatatggag cactcgaggc agtccaccat        60
     cagaacacca atgatatgag caagttcttg aagctgaagg gcaaatggaa caaaacgtta       120
     atcacgcgag acgtgttggt gctctgtgga gtttttggag gtggaatgtg gatgatcatc       180
     cagcacctgc gttcgaaaat ctccgaacct gtgacccatg aagcaaaagg caagaggcaa       240
     agacagaaac taaagtttcg caatgcccga gacaataaga tgggtaggga ggtgtatgga       300
     gatgacgacg tcatagaaca cttctttggg gatgcctaca caaagaaggg aaagagcaaa       360
     ggcagaacgc gtggcctcgg tcataaaaac aggaaattca tcaatatgta tggatttgat       420
     cctgaagact tctcagcagt tagattcgtg gacccgctca caggagccac gctggacgac       480
     aatccgttca cagacatctc ccttgtacaa aaacactttg gagacatacg aatggacctg       540
     cttggagaag atgaactgga accagatgag ttgcgaatgc ataagacaat tcaggcctac       600
     tacatgaaca ataaaacagg taaggccctg aaagtggatc taacaccaca tgtaccactc       660
     aaggtatgtg accttcacgc aaccatcgct ggtttcccgg aacgagaaca cgaactaaga       720
     cagactggaa aagctcagcc aatagacata agtgagatac ctaaggctaa tactgagcta       780
     gtaccagttg accacgaaag tagctccatg ttcagagggt tgcgcgacta caacccaata       840
     tctaataaca tttgtcatct gacgaatgta tcagatggag cgtcgaattc gttatacggt       900
     gttggttttg ggccactcat actaacgaac cggcatcttt tcgaacggaa taacggtgag       960
     ctagtgatta aatctagaca tggtgagttc gtgatcaaaa acacgactca actccatttg      1020
     ctaccgattc cggaccgaga cttgctgcta atccgactac cgaaagacat cccacctttc      1080
     ccgcaaaaat taggctttag acaacctgag aagggtgaga ggatctgtat ggtgggatcc      1140
     aacttccaaa ctaagagcat tactagtgtg gtctctgaga ctagcacaat tatgccagta      1200
     gagaacagcc agttttggaa gcattggatt agcactaaag atggccaatg tgggagtcca      1260
     atggtgagta caaaggacgg aaagatactt ggcctacaca gcctagcgaa tttccaaaat      1320
     tccatcaact attttgctgc cttcccagat gattttgccg agaaatatct ttgcaccatc      1380
     gaagcacatg agtgggtcaa acactggaaa tacaacacca gtgcgattag ttggggctcc      1440
     ttgaacatac aagcttcgca accagcaggc ttgttcaaag tgagcaaact catatcagac      1500
     ctcgacagca cagcagtgta cgcacaa                                          1527
//