ID   AB267331; SV 1; linear; genomic RNA; STD; VRL; 1527 BP.
XX
AC   AB267331;
XX
DT   04-JUL-2007 (Rel. 92, Created)
DT   04-JUL-2007 (Rel. 92, Last updated, Version 1)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: SHD94J.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1527
RA   Ohshima K.;
RT   ;
RL   Submitted (28-JUL-2006) to the INSDC.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RX   DOI; 10.1007/s10327-007-0003-2.
RX   AGRICOLA; IND43928796.
RA   Tomitaka Y., Yamashita T., Ohshima K.;
RT   "The genetic structure of populations of Turnip mosaic virus in Kyushu and
RT   central Honshu, Japan";
RL   J. Gen. Plant Pathol. 73(3):197-208(2007).
XX
DR   MD5; 841a151bdec77edb1d881e71e7dbbf07.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1527
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="SHD94J"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   CDS             <1..>1527
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:A6P4N7"
FT                   /db_xref="InterPro:IPR001730"
FT                   /db_xref="InterPro:IPR009003"
FT                   /db_xref="UniProtKB/TrEMBL:A6P4N7"
FT                   /protein_id="BAF68939.1"
FT                   /translation="SDGISRHFMSEYGALEAVHHQNTNDMSKFLKLKGKWNKTLITRDV
FT                   LVLCGVFGGGMWMIIQHLRSKISEPVTHEAKGKRQRQKLKFRNARDNKMGREVYGDDDV
FT                   IEHFFGDAYTKKGKSKGRTRGLGHKNRKFINMYGFDPEDFSAVRFVDPLTGATLDDNPF
FT                   TDISLVQKHFGDIRMDLLGEDKLEPDELRLNKTIQAYYMNNKTGKALKVDLTPHVPLKV
FT                   CDLHATIAGFPEREHELRQTGKAQPIDISEIPKANTELEPVDHESSSMFRGLRDYNPIS
FT                   NNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELVIKSRHGEFVIKNTTQLHL
FT                   LPIPDRDLLLIRLPKDIPPFPQKLGFRQPEKGERICMVGSNFQTKSITSVVSETSTIMP
FT                   VENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDDFAEKYLY
FT                   TIEAHEWVKHWKYNTSAISWGSLNIQASQPAGLFKVSKLISDLDSTAVYAQ"
FT   mat_peptide     <1..63
FT                   /gene="CI"
FT                   /product="CI protein"
FT   mat_peptide     64..222
FT                   /gene="6K2"
FT                   /product="6K2 protein"
FT   mat_peptide     223..798
FT                   /gene="NIa-VPg"
FT                   /product="NIa-VPg protein"
FT   mat_peptide     799..>1527
FT                   /gene="NIa-Pro"
FT                   /product="NIa-Pro protein"
XX
SQ   Sequence 1527 BP; 500 A; 332 C; 357 G; 338 T; 0 other;
     agtgatggaa tatcccgtca ttttatgagt gaatatggag cactcgaggc agtccaccat        60
     cagaacacca atgatatgag caagttcttg aagctgaagg gcaaatggaa caaaacgtta       120
     atcacgcgag acgtgttggt gctctgtgga gtttttggag gtggaatgtg gatgataatc       180
     caacacctgc gttcgaaaat ctccgaacct gtaacccatg aagcaaaagg caagaggcaa       240
     agacagaaac taaagtttcg taatgcccga gacaacaaga tgggtaggga ggtgtatgga       300
     gatgacgacg tcatagaaca cttctttggg gatgcctaca caaagaaggg aaagagcaaa       360
     ggcagaacgc gtggcctcgg tcataaaaac aggaaattca tcaatatgta tggatttgat       420
     cctgaagact tctcggcagt tagattcgtg gacccactca caggagccac gctggacgac       480
     aatccgttca cagacatctc ccttgtacaa aaacactttg gagacatacg aatggacctg       540
     cttggagaag acaaactgga accggatgag ttgcgactga ataagacaat tcaggcctac       600
     tacatgaaca ataaaacagg taaggcccta aaagtggatc taacaccaca cgtaccactc       660
     aaggtatgtg acctccacgc aaccatcgct ggtttcccgg aacgagaaca cgaactaaga       720
     cagactggaa aagctcagcc aatagacata agtgagatac ctaaggccaa tactgagcta       780
     gaaccagttg accacgaaag tagctccatg ttcagagggt tgcgcgacta caacccaata       840
     tctaataata tttgtcatct gacgaatgta tcagatggag cgtcaaattc gttatatggt       900
     gttggttttg ggccactcat actaacgaac cggcatcttt tcgaacggaa taatggcgaa       960
     ctggtgatta aatctagaca tggtgagttc gtgattaaaa acacaactca attacatttg      1020
     ctgccaattc cggatcggga tttattgcta atccgactac caaaggacat cccaccattc      1080
     ccacagaaat tgggatttag acaacctgag aaaggtgaga ggatctgcat ggtaggatct      1140
     aacttccaaa ccaagagcat tacgagtgtg gtctctgaga ctagcacgat aatgccagtg      1200
     gaaaacagcc agttttggaa gcattggatt agcaccaaag atggccaatg tgggagccca      1260
     atggtgagca cgaaggacgg aaagatactt ggcctacata gcctagcgaa tttccaaaat      1320
     tccatcaact actttgctgc cttcccagat gatttcgctg agaaatatct ttacaccatc      1380
     gaagcacatg agtgggtcaa acactggaaa tataacacca gtgcgattag ttggggctcc      1440
     ttaaacatac aagcttcgca accagcaggc ttgttcaaag tgagcaaact catatcagac      1500
     cttgatagca cagcagtgta cgcacaa                                          1527
//