ID AB261175; SV 1; linear; genomic RNA; STD; VRL; 6304 BP. XX AC AB261175; XX DT 02-DEC-2006 (Rel. 90, Created) DT 02-FEB-2009 (Rel. 99, Last updated, Version 3) XX DE Youcai mosaic virus genomic RNA, complete genome, isolate: 722. XX KW . XX OS Youcai mosaic virus OC Viruses; Riboviria; Virgaviridae; Tobamovirus. XX RN [1] RP 1-6304 RA Fuji S., Mochizuki N., Fujinaga M., Ikeda M., Shinoda K., Uematsu S., RA Furuya H., Naito H., Fukumoto F.; RT ; RL Submitted (30-MAY-2006) to the INSDC. RL Contact:Shin-ichi Fuji Akita Prefectural University, Bioresource Sciences; RL Shimoshinjo Nakano Kaidobatanishi 241-7, Akita, Akita 010-0195, Japan XX RN [2] RA Fuji S., Mochizuki N., Fujinaga M., Ikeda M., Shinoda K., Uematsu S., RA Furuya H., Naito H., Fukumoto F.; RT "Incidence of viruses occurring alastroemeria plants cultivated in Japan, RT and characterization of Youcai mosaic virus and Broad bean wilt virus 2"; RL Unpublished. XX DR MD5; 2a833272c6067851df685a1acc763701. DR RFAM; RF00225; IRES_Tobamo. DR RFAM; RF01072; TMV_UPD-PK3. XX FH Key Location/Qualifiers FH FT source 1..6304 FT /organism="Youcai mosaic virus" FT /isolate="722" FT /mol_type="genomic RNA" FT /isolation_source="Alstroemeria" FT /db_xref="taxon:228578" FT CDS join(69..3377,3381..4862) FT /codon_start=1 FT /transl_table=1 FT /product="180K protein" FT /note="ORF2" FT /db_xref="GOA:A0PA59" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:A0PA59" FT /protein_id="BAF37652.1" FT /translation="MAQFQQTVNMQTLQAAAGRNSLVNDLASRRVYDNAVEELNARSRR FT PKVHFSKSVSTEQTLLASNAYPEFEISFTHTQQAVHSLAGGLRTLELEYLMMQVPFGSL FT TYDIGGNFAAHLFKGRDYVHCCMPNLDVRDIARHEGHKEAIFSYISRLDRQRRPVPEYQ FT RAAFNNYAENPHFVHCDRPFQQCKLSTANGADTYAIALHSIYDIPVDEFGAALLRKNVK FT ICYAAFHFHENMLLDCDSVTLEDIGATFQRAGDKLNFFFHNESTLNYTHSFSNIIKYVC FT KTFFPASQRYVYHKEFLVTRVNTWYCKFTRVDTFTLFRGVYRSSVDSEEFYKAMDDAWE FT YKKTLAMLNSERTIFKDSAAMNFWFPKVRDMVIIPLFDASITTGRMSRREVLVNKDFVY FT TVLNHIKTYQAKALTYANVLSFVESIRSRVIINGVTARSEWDTDKAILGPLAMTFFLVT FT KLSHVQDEIVLKKFQKFDTTTKELIWTSLCDALKGVIPSVKETLARGGFVKLAEESLEI FT KIPELYCTFTDRLVLQYKMAEEFQSCDLSKPLEESEKYYNALSELSVLENLDSFDLDGF FT KELCQKKNVDPDVAAKVVVAIMNSELTLPFKKPTEEEIAEALSGEVKQSEGLSLSNNAP FT FPCVNNLKEGLVPAYGVCPTGGNFDRMDIDISEFHLKSVDAVKKGAMMSAVYTGKIKVQ FT QMKNYVDYLSASLSATVSNLCKVLRDVHGVDSESQEKSGVWDVRRGRWLLKPNAKCHAW FT GVAEDANHKLVIVLLNWDEGKPVCDETWFRLAVSSDSLVYSDMGKLKTLTACCRDGEPP FT EPTAKVVLVDGVPGCGKTKEILEKVNFSEDLVLVPGKEASKMIIRRANQAGIIRADKDN FT VRTVDSFLMHPPKREFKRLFIDEGLMLHTGCVNFLTLLSHCEVAYVYGDTQQIPFICRV FT ANFPYPKHFAKLVVDEKEDRRVTLRCPADVTFFLNKKYDGAVLCTSSVERSVSAEVVRG FT KGALNPITLPLEGKILTFTQADKFELLDKGYKDVNTVHEVQGETYEKTAIVRLTATPLE FT IISRASPHVLVALTRHTTRCKYYTVVLDPMVNVISEMEKLSNFILDMYKVESGTQQLQI FT DTVFKGTNLFVPTPKSGDWRDMQFYYDTLLPGNSTILNEFDAVTMNLRDISLNVKDCRI FT DFSKSVQLPKERPIFMKPKLRTAAEMPRTAGLLENLVAMIKRNMNAPDLTGTIDIEDTA FT SLVVEKFWDAYVVKEFSGTDGMAMTRESFSRWLSKQESSTVGQLADFNFVDLPAVDEYK FT HMIKSQPKQKLDLSIQDEYPALQTIVYHSKKINAIFGPMFSELTRMLLERIDTSKFLFY FT TRKTPTQIEEFFSDLYSSQAMEILELDISKYDESQNEFHCAVEYKIWEKLGIDDWLAEV FT WRQGHRKTTLKDYTAGIKTCLWYQRKSGDVTTFIGNTIIIAACLSSMIPMDKVIKAAFC FT GDDSLIYIPKGLDLPDIQAGANLTWNFEAKLFRKKYGYFCGRYVIHHDRGAIVYYDPLK FT LISKLGCKHIRDEVHLEELRRSLCDVTSNLNNCAYFSQLDEAVAEVHKTAVGGAFVYCS FT IIKYLSDKRLFKDLFFV" FT CDS 69..3380 FT /codon_start=1 FT /transl_table=1 FT /product="130K protein" FT /note="ORF1" FT /db_xref="GOA:A0PA60" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:A0PA60" FT /protein_id="BAF37653.1" FT /translation="MAQFQQTVNMQTLQAAAGRNSLVNDLASRRVYDNAVEELNARSRR FT PKVHFSKSVSTEQTLLASNAYPEFEISFTHTQQAVHSLAGGLRTLELEYLMMQVPFGSL FT TYDIGGNFAAHLFKGRDYVHCCMPNLDVRDIARHEGHKEAIFSYISRLDRQRRPVPEYQ FT RAAFNNYAENPHFVHCDRPFQQCKLSTANGADTYAIALHSIYDIPVDEFGAALLRKNVK FT ICYAAFHFHENMLLDCDSVTLEDIGATFQRAGDKLNFFFHNESTLNYTHSFSNIIKYVC FT KTFFPASQRYVYHKEFLVTRVNTWYCKFTRVDTFTLFRGVYRSSVDSEEFYKAMDDAWE FT YKKTLAMLNSERTIFKDSAAMNFWFPKVRDMVIIPLFDASITTGRMSRREVLVNKDFVY FT TVLNHIKTYQAKALTYANVLSFVESIRSRVIINGVTARSEWDTDKAILGPLAMTFFLVT FT KLSHVQDEIVLKKFQKFDTTTKELIWTSLCDALKGVIPSVKETLARGGFVKLAEESLEI FT KIPELYCTFTDRLVLQYKMAEEFQSCDLSKPLEESEKYYNALSELSVLENLDSFDLDGF FT KELCQKKNVDPDVAAKVVVAIMNSELTLPFKKPTEEEIAEALSGEVKQSEGLSLSNNAP FT FPCVNNLKEGLVPAYGVCPTGGNFDRMDIDISEFHLKSVDAVKKGAMMSAVYTGKIKVQ FT QMKNYVDYLSASLSATVSNLCKVLRDVHGVDSESQEKSGVWDVRRGRWLLKPNAKCHAW FT GVAEDANHKLVIVLLNWDEGKPVCDETWFRLAVSSDSLVYSDMGKLKTLTACCRDGEPP FT EPTAKVVLVDGVPGCGKTKEILEKVNFSEDLVLVPGKEASKMIIRRANQAGIIRADKDN FT VRTVDSFLMHPPKREFKRLFIDEGLMLHTGCVNFLTLLSHCEVAYVYGDTQQIPFICRV FT ANFPYPKHFAKLVVDEKEDRRVTLRCPADVTFFLNKKYDGAVLCTSSVERSVSAEVVRG FT KGALNPITLPLEGKILTFTQADKFELLDKGYKDVNTVHEVQGETYEKTAIVRLTATPLE FT IISRASPHVLVALTRHTTRCKYYTVVLDPMVNVISEMEKLSNFILDMYKVESGTQ" FT CDS 4874..5671 FT /codon_start=1 FT /transl_table=1 FT /product="MP protein" FT /note="ORF3" FT /db_xref="GOA:A0PA61" FT /db_xref="InterPro:IPR001022" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:A0PA61" FT /protein_id="BAF37654.1" FT /translation="MSYEPKVSDFLALTKKEEILPKALTRLKTVSISTKDVISVKDSES FT LCDIDLLVNVPLDKYRYVGVLGVVFTGEWLVPDFVKGGVTVSVIDKRLENSKECIIGTY FT RAAAKDKRFQFKLVPNYFVSVADAKRKPWQVHVRIQNLRIEAGWQPLALEVVSVAMVTN FT NVVVKGLREKVIAVNDPNVEGFEGVVDDFVDSVAAFKAVDTFRKKKKKIGGKDVNNNKY FT RYRPERYAGQDSLNYKEENVLQHHELESVPVFRSDVGRAHSDA" FT CDS 5595..6068 FT /codon_start=1 FT /transl_table=1 FT /product="coat protein" FT /note="ORF4" FT /db_xref="GOA:A0PA62" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:A0PA62" FT /protein_id="BAF37655.1" FT /translation="MSYNITSSNQYQYFAAMWAEPTAMLNQCVSALSQSYQTQAARDTV FT RQQFSNLLSAIVTPNQRFPDTGYRVFINSAVLKPLYESLMKSFDTRNRIIETEEESRPS FT ASEVANATQRVDDATVAIRSQIQLLLNELSNGHGLMNRAEFEVLLPWTTAPAT" XX SQ Sequence 6304 BP; 1821 A; 1179 C; 1557 G; 1747 T; 0 other; gttttatttt tattgcaaca acaacaacaa attacaataa caacaaaaca aatacaaaca 60 acaacaacat ggcacaattt caacaaacag taaacatgca gacattgcag gctgccgcgg 120 ggcgcaacag cctggtgaat gatttagcct ctcgacgcgt ttatgataat gctgttgaag 180 agctgaatgc acgctcgaga cgccctaagg tccatttctc caagtcagtg tctacggaac 240 agacgctact agcttcaaac gcttatccgg agtttgagat ttctttcact catacccagc 300 aagcagtaca ctccctcgcg ggtggcttaa ggactcttga gttagagtat ctcatgatgc 360 aagttccgtt cggttctctt acgtacgaca taggtggtaa cttcgccgcg caccttttta 420 agggacgcga ttacgttcac tgctgtatgc cgaatttgga tgttcgcgat atagctcgtc 480 acgaagggca caaggaggcg atcttcagtt acatttcccg cctagatagg cagagacgtc 540 cggtccccga ataccagaga gcggcgttca ataattacgc agagaaccct catttcgtcc 600 attgtgatcg accttttcaa cagtgcaagc taagcaccgc taacggagcg gacacttacg 660 ctatagcgct tcatagtata tatgatattc ctgttgatga gttcggtgcg gcattgctta 720 ggaagaatgt caagatttgt tacgcggcct tccatttcca tgagaatatg cttctggatt 780 gtgattctgt caccctcgag gatatcggag ctacattcca gcgtgctggc gacaaattga 840 acttcttctt ccacaacgaa agcacactca attacaccca tagttttagt aatataatta 900 agtacgtgtg taaaaccttt tttcccgcta gtcaacgtta cgtgtaccat aaggagtttt 960 tagttacgag agtcaatacg tggtattgta agtttactag agtcgacact tttactcttt 1020 tccgtggtgt gtatagatcg agtgtagata gcgaagagtt ctataaggct atggatgacg 1080 catgggagta caagaagacc ttggctatgc tcaactctga gaggactatc ttcaaggaca 1140 gcgcagctat gaatttctgg tttccgaagg tcagagatat ggttatcata cctctattcg 1200 acgcatccat tacaactgga aggatgtcga gaagggaagt tttggtaaac aaggattttg 1260 tttacacggt ccttaaccat attaaaactt atcaagctaa agccttaact tacgctaatg 1320 tactttcttt cgtcgagtct attagatcta gagtcataat taacggtgtc actgccaggt 1380 cggaatggga taccgacaag gcaattttag gtccattagc gatgaccttt ttccttgtta 1440 caaagttgag tcatgttcag gacgaaatcg tcctaaaaaa gttccaaaag tttgacacta 1500 ctaccaaaga attgatttgg acaagtctct gcgatgccct gaagggggta ataccctcgg 1560 tcaaagagac acttgcgcgt ggtggtttcg ttaaacttgc tgaagagagt ttggagatca 1620 aaattccaga gttatactgc acttttaccg acaggttggt gcttcagtat aagatggcag 1680 aggagtttca gtcgtgtgat ctgtcaaaac ctttggaaga gtctgagaaa tactataacg 1740 cgttatccga gctgtctgtg ctcgaaaatc tcgactcatt tgatctggat ggttttaagg 1800 aattatgtca aaagaagaat gtcgatccgg atgtggcagc gaaggtagtg gtggcgatca 1860 tgaatagcga gttgacgtta ccgttcaaga aacctacaga ggaggaaatt gctgaggcgc 1920 ttagtggaga agtgaaacag agtgaggggt tgagtttgag taacaacgca cctttcccat 1980 gtgtgaacaa tctcaaggaa ggtttggttc cggcgtatgg ggtgtgtccg actggtggta 2040 acttcgacag aatggatata gacatatctg agttccatct caagagtgta gatgcagtta 2100 aaaagggggc tatgatgtca gcggtgtaca cgggaaagat taaggttcag cagatgaaga 2160 actacgtcga ttacctaagt gcttcgctgt cagctacggt ctcaaacctc tgcaaagtgc 2220 ttagggatgt tcacggtgtt gattctgaat cccaagagaa gtcaggtgtg tgggatgtga 2280 gaagaggacg ttggttacta aaacctaacg cgaaatgtca cgcttggggt gttgcggaag 2340 atgctaacca taagttagtc atcgtgttgc tcaactggga tgaaggaaaa cctgtctgcg 2400 atgagacatg gtttagattg gcagtttcta gcgattcact agtgtactct gatatgggaa 2460 aactcaagac gttaacggca tgttgcagag atggagaacc tccggagcct acagcgaagg 2520 tagtgctcgt tgacggtgtt ccgggctgtg gaaaaacaaa ggaaatcttg gagaaggtta 2580 acttttctga agatttagtg ttagttcctg gaaaagaagc gtctaagatg atcattcgaa 2640 gagcgaacca agcaggcatt ataagagctg acaaggataa cgtaaggaca gtcgattcct 2700 tcttgatgca ccctccaaag agggaattta agagattgtt tatcgacgaa ggattaatgt 2760 tacacacagg ttgtgttaac tttttaacgt tactgtctca ttgcgaggtg gcttacgttt 2820 atggtgatac acaacagatc cccttcattt gtagggtagc aaattttcct tatcctaaac 2880 attttgcgaa gcttgttgta gacgaaaagg aggacaggag ggtcacgctt aggtgtccgg 2940 cggatgttac attcttcttg aacaagaagt atgatggtgc ggtactgtgt acaagttccg 3000 tggagaggtc agtcagtgcg gaggttgtga gaggaaaagg tgctttaaac ccaataactt 3060 taccgttaga gggaaagatt ctcaccttta cacaggccga taagttcgag ttgttggata 3120 aaggctacaa ggatgtgaat acggtccatg aggttcaagg tgaaacgtac gaaaagacag 3180 ctattgttcg gttgactgcg actcctttag agatcatatc gagagcatca cctcatgttt 3240 tggtggcgtt gacaaggcac acaacacgat gtaaatatta cacagttgtg cttgacccga 3300 tggtgaatgt gatttccgaa atggagaaac tatccaactt tatccttgac atgtacaagg 3360 ttgagtcggg gacccaatag caattacaga tcgacacagt gttcaaaggg acaaacctgt 3420 tcgtcccaac gcctaagtct ggagattggc gagacatgca gttctactat gacactcttc 3480 ttcctggtaa cagtactatt cttaacgaat ttgatgctgt tacgatgaat ttgagggata 3540 tttccttaaa tgttaaggac tgtaggatcg acttttcaaa atcagtgcaa ttaccgaaag 3600 aacgaccgat ttttatgaaa cccaaattac ggaccgcagc agaaatgccg cgtaccgctg 3660 ggctacttga aaatcttgtc gcaatgatca aaagaaacat gaatgcacca gacttgacgg 3720 gaacgattga tatagaggac actgcgtcgt tagtggttga gaagttttgg gatgcgtatg 3780 tggtgaagga attcagcgga acagacggaa tggctatgac aagggaaagt ttttctagat 3840 ggctctctaa acaagagtca tctactgtcg gtcagctagc ggatttcaac tttgtggatt 3900 tgccggcggt ggacgagtat aagcatatga tcaagagtca acctaagcaa aaattagact 3960 tgagtataca ggatgagtac cctgcattgc agactatagt ctatcattcg aagaagatca 4020 atgcgatttt tggtcctatg ttctcagaat tgacgaggat gcttcttgaa agaatcgata 4080 cttccaagtt cctgttttat accaggaaga cgcctacaca gattgaagag tttttctctg 4140 atctatattc gtcacaagct atggagatct tggagcttga catttcaaag tatgacgagt 4200 ctcaaaacga gtttcattgc gctgtggagt acaaaatatg ggaaaagctt ggaatcgatg 4260 attggttagc ggaagtgtgg agacaaggac acagaaaaac gactcttaaa gactacacgg 4320 ctggaattaa aacatgcttg tggtatcaaa ggaaaagcgg tgacgtaact accttcattg 4380 ggaacacgat tatcattgca gcatgtttga gttctatgat cccgatggat aaagtgatca 4440 aggcggcctt ctgcggtgac gacagtttga tatatattcc gaaaggtttg gacctgccgg 4500 atattcaagc tggagccaac cttacgtgga atttcgaggc caaattgttc aggaagaagt 4560 acgggtattt ctgcggtcga tacgttattc accatgacag aggagcaatt gtatattatg 4620 atccgcttaa gttgatatct aaattaggtt gtaaacatat tagagatgaa gttcacttag 4680 aagagttgcg tagatctctg tgtgatgtaa ctagtaattt aaataattgt gcgtattttt 4740 cacagttaga tgaggccgtt gccgaggtcc ataagaccgc ggttggcgga gcgtttgttt 4800 actgtagtat aattaaatat ttgtcagata agaggttgtt taaagatttg ttttttgttt 4860 gactgagtca ataatgtctt acgagcctaa agtaagcgac ttccttgctc ttacgaaaaa 4920 ggaggaaatt ttacccaagg ctcttacgag gttaaagact gtctctatta gtactaagga 4980 tgttatatct gttaaggatt ctgagtccct gtgtgatata gatttactag ttaatgtgcc 5040 attagataag tatagatatg tgggtgtttt aggtgttgtt tttaccggtg agtggttagt 5100 gccggatttc gttaaaggcg gagtaacagt gagcgtgatt gacaaacggc ttgaaaactc 5160 caaagagtgc ataattggta cgtacagagc tgctgcaaaa gacaaaaggt tccagttcaa 5220 gctggttcca aattacttcg tgtctgttgc agatgccaag cgaaaaccgt ggcaagttca 5280 tgtgcgtatt caaaatttaa ggattgaagc tggatggcaa cctctggcct tagaggtggt 5340 ttctgttgct atggtcacta ataacgtggt tgttaagggt ttgagagaaa aggtcatcgc 5400 agtgaatgat ccgaatgtcg aaggtttcga aggcgtggtt gacgatttcg tcgattcggt 5460 cgcagcattc aaggcggttg acacttttag aaagaaaaag aaaaagattg gaggaaagga 5520 tgtaaataat aataaatata gatatagacc ggagagatac gccggtcagg attcgttaaa 5580 ttataaagaa gaaaatgtct tacaacatca cgagctcgaa tcagtaccag tatttcgcag 5640 cgatgtgggc agagcccaca gcgatgctta accagtgcgt gtccgcgttg tcgcaatcgt 5700 atcaaactca ggctgcaaga gatactgtta ggcaacagtt ctcaaacctg ctaagtgcga 5760 ttgtgacacc aaaccagcgg tttccagata caggataccg ggtgtttatt aattcagcag 5820 ttctaaaacc gttgtacgag tctcttatga agtcctttga tactagaaat aggatcatcg 5880 aaactgaaga agagtcgcgt ccatcggctt ccgaagtagc taatgcaaca caacgtgttg 5940 atgatgcaac cgtggccatc aggagtcaaa ttcagctttt gctgaacgag ctctccaacg 6000 gacatggtct gatgaacagg gcagagttcg aggttttatt accttggact actgctccgg 6060 ctacataggc gtggtgcaca cgatagtgca tagtgttttt ctctccactt aaatcgaaga 6120 gatatactta cggtgtaaat ccgtaagggt gacgtaaacc aaattacgta atgtttttag 6180 gttccattta aatcgaaacc tgttatttcc tggatcacct gttaacgtac gcgtggcgta 6240 tattacagtg ggaataacta aaagtgagag gttcgaatcc tcccgaaccc ccggttgggg 6300 ccca 6304 //