ID AB261167; SV 1; linear; genomic RNA; STD; VRL; 6485 BP. XX AC AB261167; XX DT 02-DEC-2006 (Rel. 90, Created) DT 07-SEP-2010 (Rel. 106, Last updated, Version 2) XX DE Cucumber mottle virus genomic RNA, complete genome. XX KW . XX OS Cucumber mottle virus OC Viruses; Riboviria; Virgaviridae; Tobamovirus. XX RN [1] RP 1-6485 RA Kubota K., Iwanami T.; RT ; RL Submitted (30-MAY-2006) to the INSDC. RL Contact:Kenji Kubota National Agricultural Research Center for Kyushu RL Okinawa Region, Research team for vegetables and ornamental crops in RL southern Japan; Suya 2421, Koshi, Kumamoto 861-1192, Japan XX RN [2] RA Orita H., Sakai J., Kubota K., Okuda M., Tanaka Y., Hanada K., Imamura Y., RA Nishiguchi M., Karasev A.V., Miyata S., Iwanami T.; RT "Molecular and Serological Characterization of Cucumber mottle virus, a New RT Cucurbit-Infecting Tobamo-like Virus"; RL Plant Dis. 91:1574-1578(2006). XX DR MD5; f3e8daea879d28d28fd91fd055365737. DR EuropePMC; PMC5282660; 28137291. DR RFAM; RF01072; TMV_UPD-PK3. XX FH Key Location/Qualifiers FH FT source 1..6485 FT /organism="Cucumber mottle virus" FT /mol_type="genomic RNA" FT /db_xref="taxon:388038" FT 5'UTR 1..60 FT CDS 61..5079 FT /codon_start=1 FT /transl_table=1 FT /transl_except=(pos:3559..3561,aa:OTHER) FT /gene="replicase" FT /product="188 kDa replicase" FT /db_xref="GOA:A0PA51" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:A0PA51" FT /protein_id="BAF37644.1" FT /translation="MANIDQQINNVREAAALGKNPLVSQLAAKRVYDEAVRNLDAKDRR FT PKVTFARQLNTEHMRIVSDAYPEFTINFSNSVNSVHSLAGGLRALELEYMMMQIPFGSP FT CYDIGGNFTSHLLKGRSYIHCCNPCLDLKDAARNVMYHDSIQRYVNKFSRPRAQSPPEP FT STTPFAGYAGRVLPDFQVKAIERYHTEPHSVSCTEVFQACPYTFPQSGETYAVSLHSIY FT DIPFAEIGPALLRKGTKVLFAAFHFSEELLIGADKGEMNEIGAFFIKDGDNISFRFGNE FT STLHYEHSFENIRKIVTRTYFPASDRVVYVKEFMVKRVNTFFFRLVKVDTHVLHKSLME FT YPSAGTKNEYFSLNSSPIFKDKATFSVWFPSAAKSVVIPVFKRKSFFSGSVSVSQMLVE FT SDFAYTVYNHICTYDNKALTWKNVQSFVESIRSRVVVNGVSVRSEWNVPIDQLTDISFT FT LFLMVKLKKSEVEFLESKIDTGSKSLFQALCDSVSSAVDGLKDHIVDALSATGWFSSHR FT DELVFKAPCLFMDFSDYLSGVFEADAQVEKARVGDALASSDSLYKKISELCDKYTGLDF FT DTEKFQHFCEKFDVSPELITHVIEGIFSLDAGVTVAGDRGLAPPIAAAIALSPIDADTC FT EDLMDEGEDSDISLIANCSNFSCEELRRDVLVEKAALQPFYRARNSMMVNYMVNNSPTK FT PKQWVEKGSITLPQMGLSVRKNFHKVDFSDDEKVALSAIHLKPVDDLRLKESITPVLYT FT GPIRVRQMNNYLDYLSSSLGAVINNLRRLVLATWESEGETMLNYGLFDCSKRSWVLVPN FT DKAHQWGIVLTDDKVVRVVLLQYDDDGLPVVEKNWVRFAVSSDTKIFSVIRSLEVLSKE FT PVKDVTAEVTLVDGVPGCGKTAEIVSKVNWQTDLVLTPGKEAAAMIRRRANSKFRKPVA FT THDNVRTFDSFIMNKKPYKFTTLWVDEGLMVHTGLLNFSINIAGVKKVFVFGDRKQIPF FT INRVMNFDYPVELSKLIVDNVERRDVTKRCPVDVTKFLNEVYPNAVSTTSDVFYSLNAK FT RVAGPGLLRPELTAFKGKIVTFTQSDKFTLEKAGYTDVNTVHEIQGETFDEVSLVRATA FT TPIGLITRKSPHVLVALTRHTKTLTYYTVTVDCICTIVDELNGVDQSILSMYQCVAGKA FT XQLKQSQLYFQKNLQLPVSKRGTISDMQFYYDRCLPGNSFVLNDFDSVTLRLTNNEFNI FT QPCRLTLSKLDPVPNLMKLETKNFLQPLLHTANERPRIPGLLENLVAMIKRNMNTPDLA FT GTVDIDTMAKSVVEKFFSSFLRDEQLDNILDSVRAVSAESFQEWYDVQATAALGQLANF FT DFIDLPPIDAYTHMIKRQPKAKLDTSVQTEYPALQTIVYHPKSVNAIFGPVFKFLTSKF FT LSMLDTSKFFFYTRKTPEDLENFFSDLSDHSVMDVLELDVSKYDKSQNDFHFAVEMLIW FT ERLGLDDVLAKMWAKGHRRTLVTDFQSGIKTLIYYQRKSGDVTTFIGNSFIIAACVASI FT LPLGQCVKAAFCGDDSLVYMPTGLEYPDIQSAANLVWNFEAKLFKKRFGYFCGKYIIHH FT KTGCVVYPDPLKLIGKLGAKNITDWNHLEEFRVSLMDVSKSLFNSAYHHLLDDAIHEVF FT PHAGGCGFVINSICKYLSDKRLFRNLFIECDVNK" FT CDS 61..3561 FT /codon_start=1 FT /transl_table=1 FT /gene="replicase" FT /product="130 kDa replicase" FT /db_xref="GOA:A0PA52" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:A0PA52" FT /protein_id="BAF37645.1" FT /translation="MANIDQQINNVREAAALGKNPLVSQLAAKRVYDEAVRNLDAKDRR FT PKVTFARQLNTEHMRIVSDAYPEFTINFSNSVNSVHSLAGGLRALELEYMMMQIPFGSP FT CYDIGGNFTSHLLKGRSYIHCCNPCLDLKDAARNVMYHDSIQRYVNKFSRPRAQSPPEP FT STTPFAGYAGRVLPDFQVKAIERYHTEPHSVSCTEVFQACPYTFPQSGETYAVSLHSIY FT DIPFAEIGPALLRKGTKVLFAAFHFSEELLIGADKGEMNEIGAFFIKDGDNISFRFGNE FT STLHYEHSFENIRKIVTRTYFPASDRVVYVKEFMVKRVNTFFFRLVKVDTHVLHKSLME FT YPSAGTKNEYFSLNSSPIFKDKATFSVWFPSAAKSVVIPVFKRKSFFSGSVSVSQMLVE FT SDFAYTVYNHICTYDNKALTWKNVQSFVESIRSRVVVNGVSVRSEWNVPIDQLTDISFT FT LFLMVKLKKSEVEFLESKIDTGSKSLFQALCDSVSSAVDGLKDHIVDALSATGWFSSHR FT DELVFKAPCLFMDFSDYLSGVFEADAQVEKARVGDALASSDSLYKKISELCDKYTGLDF FT DTEKFQHFCEKFDVSPELITHVIEGIFSLDAGVTVAGDRGLAPPIAAAIALSPIDADTC FT EDLMDEGEDSDISLIANCSNFSCEELRRDVLVEKAALQPFYRARNSMMVNYMVNNSPTK FT PKQWVEKGSITLPQMGLSVRKNFHKVDFSDDEKVALSAIHLKPVDDLRLKESITPVLYT FT GPIRVRQMNNYLDYLSSSLGAVINNLRRLVLATWESEGETMLNYGLFDCSKRSWVLVPN FT DKAHQWGIVLTDDKVVRVVLLQYDDDGLPVVEKNWVRFAVSSDTKIFSVIRSLEVLSKE FT PVKDVTAEVTLVDGVPGCGKTAEIVSKVNWQTDLVLTPGKEAAAMIRRRANSKFRKPVA FT THDNVRTFDSFIMNKKPYKFTTLWVDEGLMVHTGLLNFSINIAGVKKVFVFGDRKQIPF FT INRVMNFDYPVELSKLIVDNVERRDVTKRCPVDVTKFLNEVYPNAVSTTSDVFYSLNAK FT RVAGPGLLRPELTAFKGKIVTFTQSDKFTLEKAGYTDVNTVHEIQGETFDEVSLVRATA FT TPIGLITRKSPHVLVALTRHTKTLTYYTVTVDCICTIVDELNGVDQSILSMYQCVAGKA FT " FT CDS 5066..5854 FT /codon_start=1 FT /transl_table=1 FT /gene="mp" FT /product="28 kDa movement protein" FT /db_xref="GOA:A0PA53" FT /db_xref="InterPro:IPR001022" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:A0PA53" FT /protein_id="BAF37646.1" FT /translation="MSISNLSVESQLKPSNFVKLSWVDKLLPDYFSILRFLSVTDHSVI FT KAREYESFLPVELLRGVDLTKHKYVTLLGVVISGVWTIPEGCSGGATVGLVDTRMERVV FT EGTVCKFSVPASVREFNVRFIPNYSITAADAARHPWSLFVRLKGVNIKDSFSPLTLEIA FT ALVATTNSIIKKSLKAIVSDVVVGSDAAVAIADRDSQVNSFFDSVPITKSVVNFDKSYK FT SRVPKKDSSGGSGKVKRSTGTSGPADTEFSDDGLLSNHSD" FT CDS 5826..6314 FT /codon_start=1 FT /transl_table=1 FT /gene="cp" FT /product="18 kDa coat protein" FT /db_xref="GOA:A0PA54" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:A0PA54" FT /protein_id="BAF37647.1" FT /translation="MAYSPITPTNLSLFSSNYVPFTEFYNYLVTAQGEAFQTQQGRDSV FT RDSLSGFFSSPVSPTVRFPDGVFYVFLGNPVLDPLFKALLQSLDTRNRVIEVDNPSNPT FT TAESLNAVQRTDDSTVSSRVGLINLRAAITQGNGVVNRSIFESSNGLTWATSGSSSSK" FT 3'UTR 6315..6485 XX SQ Sequence 6485 BP; 1677 A; 1361 C; 1477 G; 1970 T; 0 other; gtatttcttc ttctactact acaacaaaga aaaacaaata cacaaacaac aacaacaaat 60 atggccaaca ttgatcaaca aatcaacaat gtacgcgagg ctgcggcttt ggggaagaac 120 cccttagtgt cgcagctcgc tgcaaaaagg gtttatgacg aggctgtccg caacctcgat 180 gctaaagaca gacgcccaaa ggtcaccttc gcaaggcaac tgaacacaga gcacatgcgg 240 attgtttccg acgcttatcc agagtttact attaacttta gtaactctgt aaattccgtg 300 catagccttg ctggcggatt gagagcactc gagctagaat acatgatgat gcagattcct 360 tttggctcgc cgtgctacga tataggtggg aattttactt cccatcttct aaaagggaga 420 tcgtacatcc actgctgtaa tccctgttta gatctcaagg acgctgcgag aaacgtgatg 480 tatcacgaca gcatacaaag gtatgttaac aaattttcgc gtcccagggc acaatctccc 540 ccggagcctt ccacgacccc atttgccgga tacgccggcc gagtcctccc cgactttcaa 600 gtcaaggcga tcgagaggta tcatactgag cctcattctg tgtcttgcac tgaagtcttt 660 caggcatgcc cctacacatt tccacaatct ggggaaactt atgcggtgtc tctgcactcg 720 atttatgaca ttcctttcgc ggaaataggt cccgcacttc tgcggaaagg tacgaaggtt 780 ctcttcgcgg cctttcactt tagcgaggaa ttattaattg gtgctgataa aggagagatg 840 aacgagatcg gagccttttt cataaaagat ggtgataaca tctcctttag attcgggaac 900 gaatcgacac ttcattacga gcactccttc gaaaatatta ggaaaatagt tactaggact 960 tactttccag cttcagatag agtagtttac gttaaagaat ttatggtaaa gcgtgtgaat 1020 actttttttt ttaggctggt taaagtcgac acccatgtcc tgcacaagtc tctgatggaa 1080 tacccgtctg cgggcacgaa gaacgaatac ttctccctca attcatcgcc gattttcaaa 1140 gataaagcca cgttctctgt gtggttccct tcagcggcga aatctgtggt aatcccggtt 1200 ttcaagagga aaagtttttt ttctggatct gtttcagtta gtcagatgtt ggttgagtct 1260 gacttcgcct acaccgtcta taatcacata tgcacatatg ataataaggc actcacgtgg 1320 aaaaacgtac aatctttcgt ggaatccatc cgttcaaggg tggttgttaa tggtgtctcc 1380 gtccggtccg aatggaatgt acctattgat cagttgacgg atatctcctt tactcttttc 1440 ttgatggtca aacttaaaaa gtctgaagtg gagtttctgg aatctaaaat cgatactggg 1500 agtaagagtc tgttccaggc tctgtgcgac tctgtgagtt ctgcggtcga tggcttaaag 1560 gatcatatcg ttgatgcttt aagtgccacc gggtggttct cgtcgcaccg agacgaattg 1620 gtctttaaag ccccgtgtct ttttatggac ttcagcgact atctctctgg agtttttgag 1680 gctgacgctc aagtcgagaa ggcgagggtg ggtgatgctc ttgcatcatc agattcgcta 1740 tataagaaga tatctgaact ctgtgataag tacaccgggc tcgatttcga cacagagaaa 1800 ttccagcatt tctgcgaaaa atttgacgtt tcacctgaac tgatcacaca tgtgatagag 1860 ggcatttttt ccctcgatgc gggagtcacg gtggccggtg acagaggttt ggctccgcca 1920 atcgctgctg ccatagcctt gtctccgatc gatgcggata cttgtgagga tctgatggat 1980 gaaggtgaag atagcgatat cagtttgatc gctaactgca gcaatttcag ttgcgaggaa 2040 ctccgccgcg atgttttggt cgaaaaggct gctctacaac ccttttacag agcgcggaac 2100 agtatgatgg tgaactacat ggttaacaac tctcctacaa aaccgaaaca gtgggtagaa 2160 aaagggtcta tcacccttcc gcaaatgggt ctgtctgtca ggaagaactt ccacaaggtg 2220 gatttcagcg atgatgagaa ggtggccctc agcgccatcc atctcaaacc tgttgatgac 2280 ttgcgactga aggagtcgat cacgccggtt ctgtacaccg gcccgattag agttagacaa 2340 atgaataatt accttgatta tctttcttct tcattaggtg ctgtaattaa taacctgcgt 2400 agattagttt tagctacttg ggaatctgaa ggtgagacca tgcttaacta cggtctcttc 2460 gattgcagca aacgaagttg ggttctggta cccaacgaca aagcccacca gtggggaatt 2520 gtgcttaccg atgacaaggt cgtccgtgtc gttctattgc agtacgatga cgatggcttg 2580 cctgttgtcg agaagaattg ggttcggttt gccgtctctt cagacaccaa aatcttttct 2640 gtaattagga gtctagaggt actttctaag gaacctgtta aagatgtcac tgctgaggtg 2700 accctcgttg acggtgtgcc tggctgcggt aaaaccgctg agatcgtttc aaaggtcaat 2760 tggcagaccg accttgtcct tacacctggt aaggaagcgg ctgctatgat tagaaggcgc 2820 gcaaattcga agtttagaaa accagttgcc actcatgata atgtcagaac ttttgattct 2880 ttcattatga acaaaaagcc ctacaaattc actaccctgt gggtggatga gggacttatg 2940 gttcacactg gtctcctgaa tttctccata aatatcgccg gtgtcaagaa ggttttcgtc 3000 tttggcgatc gcaaacagat tccttttata aatagagtta tgaattttga ttaccccgta 3060 gagctatcta aattaatagt agataacgta gagcggagag acgtgacgaa aagatgtcct 3120 gtcgatgtca caaaattctt aaacgaagtt tatccgaacg ccgtctctac cactagcgat 3180 gtattttatt ctttaaatgc taagagagtc gccggtcctg gtttattacg gcctgaattg 3240 actgctttta aagggaaaat agtgaccttc acgcaaagcg acaaattcac tttggaaaag 3300 gcaggttaca ctgacgttaa tactgtccat gaaatccaag gtgaaacttt cgacgaggtg 3360 tcactcgtaa gagccactgc aactcccatc ggtttgatca cgagaaaatc tccgcatgtt 3420 ttggtcgctt taaccagaca tacgaagacg ctgacgtact atacagtcac tgttgattgc 3480 atatgtacga tagtcgacga attgaacggt gtggaccaat caattctttc aatgtatcaa 3540 tgcgtggctg ggaaggcata gcaattaaag caaagtcagt tatacttcca aaagaacttg 3600 cagttgcctg taagtaaacg aggaactata tctgacatgc agttctatta tgatagatgc 3660 ctgcccggaa attcctttgt tcttaatgat ttcgattcag ttactttgcg tcttactaat 3720 aatgagttta atatacagcc ttgtagatta acccttagca agttagatcc tgtaccgaac 3780 ttaatgaagt tagagacaaa aaattttctt caacccttgt tgcatactgc gaacgagaga 3840 cctagaatcc caggtcttct tgaaaatctg gttgccatga ttaagcgtaa tatgaatact 3900 ccggatttgg ccggaactgt ggatatcgac acgatggcga aatcagtggt tgaaaaattt 3960 ttctcttcct ttttaaggga cgaacagtta gataatatat tagatagtgt tagagcagtc 4020 tccgcggagt cattccagga atggtatgac gtgcaggcta ctgctgcctt aggtcagtta 4080 gctaactttg attttataga cttaccgccc attgacgctt atacgcatat gattaaaagg 4140 cagccgaaag cgaagttgga tacttccgta caaacggaat accctgcttt gcagacgatt 4200 gtctatcatc ccaagtctgt taatgcaatt tttgggccag tttttaaatt tttaactagc 4260 aaatttctta gtatgttaga tacttctaag tttttttttt atactaggaa aactccagaa 4320 gaccttgaaa actttttctc tgatcttagc gaccactcgg tgatggatgt tctagagctg 4380 gacgtctcca agtacgataa atcgcaaaat gacttccatt ttgcggttga aatgcttatt 4440 tgggaacgtt taggtttgga tgatgtttta gctaagatgt gggctaaggg gcatcgcaga 4500 acccttgtta ccgactttca gtctggtatc aagacgttga tttactatca gagaaagtct 4560 ggagatgtaa ctacttttat aggcaatagt tttattatag cagcgtgtgt ggcttctatt 4620 ttacccttag gtcagtgtgt caaagccgcc ttttgtggtg atgattcttt ggtctacatg 4680 ccaaccggcc tcgaataccc tgatattcaa tctgccgcca acttagtttg gaacttcgag 4740 gctaagcttt tcaagaagag gttcggttac ttctgtggaa agtatatcat ccatcacaaa 4800 accggttgtg ttgtttatcc agatccccta aaattaatcg gtaaattagg ggcaaagaac 4860 atcacggatt ggaatcattt agaggaattc cgtgtgtctt tgatggacgt ttctaagtct 4920 ttgtttaata gtgcttatca ccatcttctt gacgatgcaa tccacgaggt tttccctcat 4980 gctgggggtt gcgggtttgt aattaattcc atttgcaagt acctgagtga taagcgtttg 5040 tttagaaatc tttttattga gtgtgatgtc aataagtaac ttgtcagtag agagtcagct 5100 taaaccctcc aactttgtaa aattgagttg ggtggataag cttcttcccg attattttag 5160 tattctccgt tttcttagtg taactgatca ctccgtgatc aaggctagag agtatgagtc 5220 ttttctccct gtcgagttgt tgcgtggtgt tgatcttact aaacacaagt atgtcacttt 5280 gctgggcgtt gttatttctg gtgtttggac aattccagaa ggatgctcag gtggtgctac 5340 tgttggtttg gttgacacac gtatggaacg tgttgttgag ggcactgtgt gtaaattttc 5400 cgtgcccgcg tctgtccgag agttcaatgt gcgcttcata cccaattatt ctatcactgc 5460 tgcagatgct gctcgccatc cttggtctct atttgtgagg ctcaagggtg tcaatataaa 5520 ggatagtttt tctccattga ctcttgaaat agctgctttg gtcgctacaa ccaattctat 5580 catcaaaaag tctttgaaag caattgtttc cgatgtcgtg gtgggttctg atgcggcagt 5640 tgccatcgca gatagggatt ctcaggtgaa ttccttcttt gattcggttc ccattacaaa 5700 gtcagtcgtt aattttgata agtcttataa gtctagagtc ccaaagaaag attcttcagg 5760 tggttcgggt aaagtcaaga ggtctaccgg tacttcagga ccggctgata ctgaattttc 5820 agacgatggc ctactctcca atcactccga ctaatctttc tctgttttcc agtaattatg 5880 ttccttttac tgagttttat aattatttag ttactgcaca aggtgaggct tttcaaactc 5940 aacaagggcg cgattctgtt cgcgattcct tgtcgggttt cttttcctcg cccgtgagtc 6000 ctaccgtcag atttcctgac ggagtttttt atgtgttttt aggtaatcct gttttggatc 6060 cgctttttaa agctctgtta cagtcgttgg atacaagaaa tagggtcata gaggttgata 6120 acccttctaa tcctacgact gctgagtctt taaacgctgt ccagcgtact gacgattcta 6180 ctgtcagttc gcgtgtgggt ttaataaact tgcgtgcggc tatcacgcaa ggtaatggag 6240 tcgtaaatag aagtattttc gagtcttcca acggtctgac gtgggcaacg tcaggctcgt 6300 cttcctccaa gtgaggaatg tttgctccgt ggcgctcacg atagagcgta gtgtttttcc 6360 gtccacttaa atcgaacggc tttctcatct ggatcgtatt gtcctctccc ctgtgaaggt 6420 gatgacttga tgagtttgta taatacgagg ggttcgaatc ccccctaacc ccgggtaggg 6480 gccca 6485 //